Clone LD30628 Report

Search the DGRC for LD30628

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:306
Well:28
Vector:pOT2
Associated Gene/TranscriptSNF4Agamma-RG
Protein status:LD30628.pep: gold
Preliminary Size:3263
Sequenced Size:2687

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17299 2002-11-16 Blastp of sequenced clone
SNF4Agamma 2008-04-29 Release 5.5 accounting
SNF4Agamma 2008-08-15 Release 5.9 accounting
SNF4Agamma 2008-12-18 5.12 accounting

Clone Sequence Records

LD30628.complete Sequence

2687 bp (2687 high quality bases) assembled on 2002-11-16

GenBank Submission: BT003249

> LD30628.complete
TGAGCGCAGACGTGTCCGGAAAGCGAACGGAAGACAAGTGGAACGGAACA
CGGCCGTATAATCAGAAATCAAACAGAGTAGTGGTGTCGTCACTTTTGCG
ACTCTCCATAAAAATCCGTCTGCCAGTGCTTGTTGCTTCTTCTTGAGTGC
GCGGTTTTCATGTATCGCCGCCGGTATTCCGCCTTCGAGCCCAGCACACC
CCGCGTGGGAGTGCTACCCTCTCCACCGCCTCAATATGCCAACCCTCCCG
CCGACACTGCCGCCCCGAAAACGCCACCCAAGCTGAGCGTACACTTTGAC
CCCAATTTGCCGAAAGACAACGATAGCAACAACAACCTCACCGGCAGCGA
AAATGCAAATGCTAAAGGCGGCGGTCGCAAGGCGCGTTCACTAAGCAATT
CGCCACTGTATCACCGAAAAAAGCGGTACGGCCATCTGCCGGCGCTGATG
TCGAATAACGGGCCGACGGCCAGCAGCAACTACCAGCTGCTGAACAGTGC
GAATCTGCGAGATCTCATCGACGGCCAACGCCACTCGCATCACGTAAGCA
GGCGCGATGACAGCCAAAGCCACAGTCATAGCGAAAGCCCAAGTCACATT
GGCCACATTAGCCAAAGCAACCAAAGCATACCAAGCCTCCCAAGCCTGCC
AAGCGGCAAAAACAAGACGAAAGATGGCAAAAAGCTGAAGGCAACTTTAA
CGGCGGCCATGTCATCGTCGCTGCTGCGACGCAAGGCGCACAGCAATCAC
AGTCAACAGCAGAAACTGCAACTGCAACAGCAACAGCAAGAGCAACATCA
GCAACAGCTGCAGCAGCAACAATTGAGAAGCAACAACAGCAAGGCAATTG
CAAATGCTGCCCGCCATTCGCTGGGTCATTCACCCTCCGCTGCCGCCGCC
GCTGCTGCAGTGCAGCAGACGCTTGTCTACGAGCGGCGACGCGTCAGCAG
CGCCCACTCCTCCCCCTCGCCCACCTCCAGGCACCACTCCCCAGTGCACC
AGTGCATGCTGATGCGGCGGCGCAGCGACTACAGCGTCGAGCAGATCGAG
CAGTGGAAACGCCAGCAGCAATTGTTGCCGCGATCCGGACGCAAGATTAG
CTTGCCTGTCGCTGATCCGTTCCTAGAGAAAGTAAATCTATCAGATCTGG
AAGAGGACGACTCACAGATCTTCGTGAAGTTCTTTCGTTTTCACAAGTGC
TATGATCTGATACCCACCTCCGCCAAGTTGGTTGTCTTCGACACCCAGCT
TCTTGTAAAGAAGGCCTTCTACGCCCTCGTCTACAACGGTGTGCGAGCGG
CACCGCTCTGGGATTCGGAGAAGCAACAGTTCGTGGGCATGCTAACCATC
ACGGACTTTATCAAGATCCTGCAAATGTATTACAAATCGCCAAATGCGTC
CATGGAGCAGCTGGAAGAGCACAAACTGGACACGTGGCGGAGCGTGCTGC
ACAACCAGGTGATGCCGTTGGTCAGCATCGGACCGGATGCGTCCCTCTAC
GATGCCATCAAAATTCTCATCCACAGCCGCATACATCGCCTGCCCGTCAT
CGATCCGGCGACCGGCAATGTCCTCTACATCCTGACACATAAACGCATAC
TTAGGTTCCTTTTCCTATACATTAATGAATTACCAAAGCCCGCGTACATG
CAAAAAAGTTTGCGCGAACTGAAGATTGGCACCTATAACAACATCGAGAC
CGCCGACGAGACGACGAGCATCATCACGGCGCTCAAGAAATTTGTGGAGC
GACGAGTCTCAGCCCTGCCACTAGTGGATTCCGATGGTCGCCTCGTTGAC
ATTTACGCAAAGTTTGATGTGATTAATCTCGCCGCCGAGAAAACCTACAA
CGATCTCGATGTTTCGCTGCGCAAAGCCAACGAGCACCGGAACGAGTGGT
TCGAGGGCGTGCAGAAGTGCAATCTGGACGAATCGCTCTACACGATCATG
GAACGAATCGTCCGCGCCGAAGTACATCGACTGGTGGTGGTCGACGAGAA
TCGCAAAGTGATCGGCATTATCTCGCTGTCCGATATACTGCTCTACCTCG
TCCTGCGACCAAGCGGTGAAGGCGTCGGTGGCTCGGAGAGCTCATTGCGT
GCGTCCGATCCCGTTCTGCTGCGCAAAGTGGCTGAGGTTGAAATACCAGC
GACAGCCGCAGCGGCGACGACAACAACCCCGCCTCGCAGTCCATCGGCCG
GATCCGGCAATCGCAGCCTGATCGAGGACATACCCGAAGAGGAGACGGCG
CCGGCGAGGAGCGACGATGCCGACAGTGATAACAATAAGTCCGCCAGTGA
GGATAAAGCCAACAATAACCAGCACGACCAGACGACGACGGCTGCGACAG
CTAATGGTGATAGCAACAACAGCCCCGTAGAAGTGTCCTTTGCCGATGAG
GCGCAGGAAGAAGAAGCTGCCGACCAGGTCGAGCGCAGCAATTGTGATGA
TGATGACCAGCCAGCGTTAGCGGAGATTGAGCGCAAGAATGCATCGATGG
ACGACGACGAGGACGATGGGATGAGCAGCGCCGTGTCCGCTGCCTCCGCT
TTGGGCCAGTCACTGACGCCCGCGGCGCAAGAAATGGCGTTGGTTAGTGA
ATAAACCTAAACCTACACCTTAACACTTAATTTAAACTTATGCTAAAGAG
ATACAGCTGTTACAGATACAAAAAAAAAAAAAAAAAA

LD30628.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
SNF4Agamma.af 3980 SNF4Agamma.af 78..2764 1..2687 13405 99.9 Plus
SNF4Agamma-RG 2841 SNF4Agamma-RG 78..2764 1..2687 13405 99.9 Plus
SNF4Agamma.s 4363 SNF4Agamma.s 78..2764 1..2687 13405 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 17028757..17029857 1..1101 5490 99.9 Plus
chr3R 27901430 chr3R 17035556..17036400 1825..2669 4165 99.5 Plus
chr3R 27901430 chr3R 17034595..17034887 1150..1442 1465 100 Plus
chr3R 27901430 chr3R 17035194..17035397 1621..1824 1020 100 Plus
chr3R 27901430 chr3R 17034948..17035126 1442..1620 895 100 Plus
chr3R 27901430 chr3R 17031426..17031474 1102..1150 245 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:24:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21204950..21206050 1..1101 5505 100 Plus
3R 32079331 3R 21211748..21212610 1825..2687 4285 99.8 Plus
3R 32079331 3R 21210788..21211080 1150..1442 1465 100 Plus
3R 32079331 3R 21211387..21211590 1621..1824 1020 100 Plus
3R 32079331 3R 21211141..21211319 1442..1620 895 100 Plus
3R 32079331 3R 21207619..21207667 1102..1150 245 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 20945781..20946881 1..1101 5505 100 Plus
3R 31820162 3R 20952579..20953441 1825..2687 4285 99.7 Plus
3R 31820162 3R 20951619..20951911 1150..1442 1465 100 Plus
3R 31820162 3R 20952218..20952421 1621..1824 1020 100 Plus
3R 31820162 3R 20951972..20952150 1442..1620 895 100 Plus
3R 31820162 3R 20948450..20948498 1102..1150 245 100 Plus
Blast to na_te.dros performed on 2019-03-15 16:01:28 has no hits.

LD30628.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:02:45 Download gff for LD30628.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 17028757..17029496 1..740 100 == Plus
chr3R 17029579..17029857 823..1101 99 -> Plus
chr3R 17031426..17031474 1102..1150 100 -> Plus
chr3R 17034596..17034886 1151..1441 100 -> Plus
chr3R 17034948..17035126 1442..1620 100 -> Plus
chr3R 17035194..17035397 1621..1824 100 -> Plus
chr3R 17035556..17036400 1825..2669 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:11:32 Download gff for LD30628.complete
Subject Subject Range Query Range Percent Splice Strand
SNF4Agamma-RG 1..2445 160..2604 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:03:23 Download gff for LD30628.complete
Subject Subject Range Query Range Percent Splice Strand
SNF4Agamma-RG 1..2445 160..2604 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:49:07 Download gff for LD30628.complete
Subject Subject Range Query Range Percent Splice Strand
SNF4Agamma-RG 1..2445 160..2604 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:53:41 Download gff for LD30628.complete
Subject Subject Range Query Range Percent Splice Strand
SNF4Agamma-RG 1..2445 160..2604 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:23:35 Download gff for LD30628.complete
Subject Subject Range Query Range Percent Splice Strand
SNF4Agamma-RG 1..2445 160..2604 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:21:57 Download gff for LD30628.complete
Subject Subject Range Query Range Percent Splice Strand
SNF4Agamma-RG 21..2689 1..2669 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:03:23 Download gff for LD30628.complete
Subject Subject Range Query Range Percent Splice Strand
SNF4Agamma-RG 21..2689 1..2669 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:49:07 Download gff for LD30628.complete
Subject Subject Range Query Range Percent Splice Strand
SNF4Agamma-RG 23..2691 1..2669 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:53:42 Download gff for LD30628.complete
Subject Subject Range Query Range Percent Splice Strand
SNF4Agamma-RG 21..2689 1..2669 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:23:35 Download gff for LD30628.complete
Subject Subject Range Query Range Percent Splice Strand
SNF4Agamma-RG 23..2691 1..2669 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:02:45 Download gff for LD30628.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21204950..21206050 1..1101 100 -> Plus
3R 21207619..21207667 1102..1150 100 -> Plus
3R 21210789..21211079 1151..1441 100 -> Plus
3R 21211141..21211319 1442..1620 100 -> Plus
3R 21211387..21211590 1621..1824 100 -> Plus
3R 21211748..21212592 1825..2669 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:02:45 Download gff for LD30628.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21204950..21206050 1..1101 100 -> Plus
3R 21207619..21207667 1102..1150 100 -> Plus
3R 21210789..21211079 1151..1441 100 -> Plus
3R 21211141..21211319 1442..1620 100 -> Plus
3R 21211387..21211590 1621..1824 100 -> Plus
3R 21211748..21212592 1825..2669 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:02:45 Download gff for LD30628.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21204950..21206050 1..1101 100 -> Plus
3R 21207619..21207667 1102..1150 100 -> Plus
3R 21210789..21211079 1151..1441 100 -> Plus
3R 21211141..21211319 1442..1620 100 -> Plus
3R 21211387..21211590 1621..1824 100 -> Plus
3R 21211748..21212592 1825..2669 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:49:07 Download gff for LD30628.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17030672..17031772 1..1101 100 -> Plus
arm_3R 17033341..17033389 1102..1150 100 -> Plus
arm_3R 17036511..17036801 1151..1441 100 -> Plus
arm_3R 17036863..17037041 1442..1620 100 -> Plus
arm_3R 17037109..17037312 1621..1824 100 -> Plus
arm_3R 17037470..17038314 1825..2669 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:25:51 Download gff for LD30628.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20945781..20946881 1..1101 100 -> Plus
3R 20948450..20948498 1102..1150 100 -> Plus
3R 20951620..20951910 1151..1441 100 -> Plus
3R 20951972..20952150 1442..1620 100 -> Plus
3R 20952218..20952421 1621..1824 100 -> Plus
3R 20952579..20953423 1825..2669 100   Plus

LD30628.pep Sequence

Translation from 159 to 2603

> LD30628.pep
MYRRRYSAFEPSTPRVGVLPSPPPQYANPPADTAAPKTPPKLSVHFDPNL
PKDNDSNNNLTGSENANAKGGGRKARSLSNSPLYHRKKRYGHLPALMSNN
GPTASSNYQLLNSANLRDLIDGQRHSHHVSRRDDSQSHSHSESPSHIGHI
SQSNQSIPSLPSLPSGKNKTKDGKKLKATLTAAMSSSLLRRKAHSNHSQQ
QKLQLQQQQQEQHQQQLQQQQLRSNNSKAIANAARHSLGHSPSAAAAAAA
VQQTLVYERRRVSSAHSSPSPTSRHHSPVHQCMLMRRRSDYSVEQIEQWK
RQQQLLPRSGRKISLPVADPFLEKVNLSDLEEDDSQIFVKFFRFHKCYDL
IPTSAKLVVFDTQLLVKKAFYALVYNGVRAAPLWDSEKQQFVGMLTITDF
IKILQMYYKSPNASMEQLEEHKLDTWRSVLHNQVMPLVSIGPDASLYDAI
KILIHSRIHRLPVIDPATGNVLYILTHKRILRFLFLYINELPKPAYMQKS
LRELKIGTYNNIETADETTSIITALKKFVERRVSALPLVDSDGRLVDIYA
KFDVINLAAEKTYNDLDVSLRKANEHRNEWFEGVQKCNLDESLYTIMERI
VRAEVHRLVVVDENRKVIGIISLSDILLYLVLRPSGEGVGGSESSLRASD
PVLLRKVAEVEIPATAAAATTTTPPRSPSAGSGNRSLIEDIPEEETAPAR
SDDADSDNNKSASEDKANNNQHDQTTTAATANGDSNNSPVEVSFADEAQE
EEAADQVERSNCDDDDQPALAEIERKNASMDDDEDDGMSSAVSAASALGQ
SLTPAAQEMALVSE*

LD30628.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23161-PA 1251 GF23161-PA 428..1251 1..814 3207 82.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24443-PA 1236 GG24443-PA 414..1236 1..814 3768 95 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18188-PA 1202 GH18188-PA 437..1202 73..814 2402 70.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
SNF4Agamma-PG 814 CG17299-PG 1..814 1..814 4152 100 Plus
SNF4Agamma-PE 906 CG17299-PE 407..906 315..814 2522 100 Plus
SNF4Agamma-PC 906 CG17299-PC 407..906 315..814 2522 100 Plus
SNF4Agamma-PF 1400 CG17299-PF 901..1400 315..814 2522 100 Plus
SNF4Agamma-PS 1400 CG17299-PS 901..1400 315..814 2522 100 Plus
SNF4Agamma-PM 614 CG17299-PM 115..614 315..814 2522 100 Plus
SNF4Agamma-PN 614 CG17299-PN 115..614 315..814 2522 100 Plus
SNF4Agamma-PA 947 CG17299-PA 448..947 315..814 2522 100 Plus
SNF4Agamma-PR 1400 CG17299-PR 901..1400 315..814 2522 100 Plus
SNF4Agamma-PJ 906 CG17299-PJ 407..906 315..814 2522 100 Plus
SNF4Agamma-PB 947 CG17299-PB 448..947 315..814 2522 100 Plus
SNF4Agamma-PQ 906 CG17299-PQ 407..906 315..814 2522 100 Plus
SNF4Agamma-PP 906 CG17299-PP 407..906 315..814 2522 100 Plus
SNF4Agamma-PK 906 CG17299-PK 407..906 315..814 2522 100 Plus
SNF4Agamma-PO 614 CG17299-PO 115..614 315..814 2522 100 Plus
SNF4Agamma-PI 538 CG17299-PI 55..538 331..814 2442 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10142-PA 1182 GI10142-PA 424..1182 67..814 2546 73.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12276-PA 1279 GL12276-PA 421..1279 1..814 3013 75.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26251-PC 872 GA26251-PC 1..872 1..814 3023 75 Plus
Dpse\GA26251-PB 953 GA26251-PB 415..953 314..814 2202 83.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15075-PA 1224 GM15075-PA 418..1224 1..814 4158 96.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19405-PA 886 GD19405-PA 376..886 299..814 2557 93.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23359-PA 1172 GJ23359-PA 418..1172 67..814 2614 72.6 Plus
Dvir\GJ23361-PA 474 GJ23361-PA 198..468 373..660 923 63.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:40:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14491-PA 1306 GK14491-PA 800..1306 315..814 2068 83.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:40:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25715-PA 907 GE25715-PA 407..907 315..814 2594 97.8 Plus

LD30628.hyp Sequence

Translation from 159 to 2603

> LD30628.hyp
MYRRRYSAFEPSTPRVGVLPSPPPQYANPPADTAAPKTPPKLSVHFDPNL
PKDNDSNNNLTGSENANAKGGGRKARSLSNSPLYHRKKRYGHLPALMSNN
GPTASSNYQLLNSANLRDLIDGQRHSHHVSRRDDSQSHSHSESPSHIGHI
SQSNQSIPSLPSLPSGKNKTKDGKKLKATLTAAMSSSLLRRKAHSNHSQQ
QKLQLQQQQQEQHQQQLQQQQLRSNNSKAIANAARHSLGHSPSAAAAAAA
VQQTLVYERRRVSSAHSSPSPTSRHHSPVHQCMLMRRRSDYSVEQIEQWK
RQQQLLPRSGRKISLPVADPFLEKVNLSDLEEDDSQIFVKFFRFHKCYDL
IPTSAKLVVFDTQLLVKKAFYALVYNGVRAAPLWDSEKQQFVGMLTITDF
IKILQMYYKSPNASMEQLEEHKLDTWRSVLHNQVMPLVSIGPDASLYDAI
KILIHSRIHRLPVIDPATGNVLYILTHKRILRFLFLYINELPKPAYMQKS
LRELKIGTYNNIETADETTSIITALKKFVERRVSALPLVDSDGRLVDIYA
KFDVINLAAEKTYNDLDVSLRKANEHRNEWFEGVQKCNLDESLYTIMERI
VRAEVHRLVVVDENRKVIGIISLSDILLYLVLRPSGEGVGGSESSLRASD
PVLLRKVAEVEIPATAAAATTTTPPRSPSAGSGNRSLIEDIPEEETAPAR
SDDADSDNNKSASEDKANNNQHDQTTTAATANGDSNNSPVEVSFADEAQE
EEAADQVERSNCDDDDQPALAEIERKNASMDDDEDDGMSSAVSAASALGQ
SLTPAAQEMALVSE*

LD30628.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
SNF4Agamma-PG 814 CG17299-PG 1..814 1..814 4152 100 Plus
SNF4Agamma-PE 906 CG17299-PE 407..906 315..814 2522 100 Plus
SNF4Agamma-PC 906 CG17299-PC 407..906 315..814 2522 100 Plus
SNF4Agamma-PF 1400 CG17299-PF 901..1400 315..814 2522 100 Plus
SNF4Agamma-PS 1400 CG17299-PS 901..1400 315..814 2522 100 Plus