Clone LD30634 Report

Search the DGRC for LD30634

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:306
Well:34
Vector:pOT2
Associated Gene/TranscriptVhaM8.9-RA
Protein status:LD30634.pep: gold
Preliminary Size:1705
Sequenced Size:1461

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8444 2001-01-01 Release 2 assignment
CG8444 2001-07-04 Blastp of sequenced clone
CG8444 2003-01-01 Sim4 clustering to Release 3
CG8444 2008-04-29 Release 5.5 accounting
CG8444 2008-08-15 Release 5.9 accounting
CG8444 2008-12-18 5.12 accounting

Clone Sequence Records

LD30634.complete Sequence

1461 bp (1461 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051790

> LD30634.complete
TTTTCTTTGCAGTCGTTCGTCATATGATTAAAAGTCCAGCGGAAAACTGA
AAATGTTGAGAGTTTTCGTGATTTTCTCGCTGTTTATAGCGGCCATCAAT
GCCTCTGGCGAATTCACCGTGCTGAACCGTCCCAAGGCAATCAGTTTCAA
GGGCAACGATGCACTGGAAAGCCACTACGTGGGTGATGTACTCTACGCTT
CCATGGGCAACGCCGTCAGCGGCGATACCAACTGGAACGGACTGACCATC
AACGATCCCTTCAACCTGGCCAAGGGCGTCATTCTGGTGCATGTCCAGGG
CATTGGTCACGTGACCACCGCCGGCAACGTCAAGACCTACGAGCTGACAG
GCTCCGGAACGGACGCCTCTCTGAACGCCCTGGCCGCCGAACTGGAGGCA
GCCAACGAGCCCGTCTGCGATATTAACTTTGAGCAGTTCGACGATGGCGT
TCAAGCCTGGAAGTCCTGCTTTGGTGATTTCGAGGCCCCAGCCGCCAAGC
CCACCAAGCACCTGAACCCCTCTCTGCACACCGCTGACAAGCAGTTCCTC
CAGGAGGTTGGATTCATCAACAGTGCCGCCGATCATCTGGCTGAGATGGC
CAAGCCCTCGAATGTCCTGATGCTGCGCGTTTCCGTCGATGGAGTGGCCA
AGGCTCATGGCGAGAAGTCCGTGGCCGTGGAGGAGGCCAACAAATTGCTG
TCGGCCGCTATCAGCCGCCTGCTTGCTGCCTCCCAGAAGTCCAGCGACTC
GGTTCTGTTTGTCCAGACCACGGAGAAGGACGTGGCAGCATCGCGTGCCA
AGCGTGATACCATTGCCGCTTCCACCACCAATCCCTACAACCTGGCCGTC
TACTACGGCAGCGACTACCCGGTGATCTTCAACATCATCCTGTGGTTCAT
GGTCGTCTTCGGACTGTCTCTGCTGGCTATCTGCTACGCCATCGCTGCCA
TGGATCCCGGCAGGGACTCCATCATTTACCGCATGACCTCTACCCGCATC
AAGAAGGACAACTAAGGAGGAGCAGGAGGAGTTGAGAAGCGAGAGGAGCA
GGAGGAGCGAGAGGAGCTTGCGTTACGCTTTGTTATTTCGTCCCCCTTTT
AAGTTGAAATTTGCCAACTTCTACTTCAATCCAACAGCGGATAAATTGTG
TGTTTGTGTGTGTGCGGACAGCTGTCGCAGTAGTTGGTTTTATTATCTAT
AAATAAGTATTAAAAAACTTTTCAGTTTTCAATGCAGTTGCGGGCGTCGC
AACAATTCCATAGAAATTTGTTACATTTTCCTGTTTTGTTGTACTTTTTA
GGTTTATATATATATACGAATATGCACAACATACTCGCCAAGTCAGTCAG
TTCTTCAAACGATTCATCATATGTAAATTATCAAAATGTGAAGTGTTGAA
AAGTAAAGTTAAATATATATAGCCTAAAAAGCCAAAAAAAAAAAAAAAAA
AAAAAAAAAAA

LD30634.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG8444-RA 1606 CG8444-RA 69..1504 1..1436 7165 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5087383..5088365 449..1431 4885 99.8 Plus
chr3R 27901430 chr3R 5086768..5087122 96..450 1775 100 Plus
chr3R 27901430 chr3R 5086450..5086544 1..95 475 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:24:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:07:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9261606..9262593 449..1436 4925 99.9 Plus
3R 32079331 3R 9260991..9261345 96..450 1775 100 Plus
3R 32079331 3R 9260673..9260767 1..95 475 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9002437..9003424 449..1436 4925 99.8 Plus
3R 31820162 3R 9001822..9002176 96..450 1775 100 Plus
3R 31820162 3R 9001504..9001598 1..95 475 100 Plus
Blast to na_te.dros performed 2019-03-16 01:07:07
Subject Length Description Subject Range Query Range Score Percent Strand
accord 7404 accord ACCORD 7404bp 6091..6130 1305..1266 119 77.5 Minus

LD30634.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:07:48 Download gff for LD30634.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5086450..5086544 1..95 100 -> Plus
chr3R 5086768..5087120 96..448 100 -> Plus
chr3R 5087383..5087948 449..1014 99 == Plus
chr3R 5088001..5088367 1067..1433 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:11:33 Download gff for LD30634.complete
Subject Subject Range Query Range Percent Splice Strand
CG8444-RA 1..963 53..1015 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:19:47 Download gff for LD30634.complete
Subject Subject Range Query Range Percent Splice Strand
VhaM8.9-RA 1..963 53..1015 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:02:27 Download gff for LD30634.complete
Subject Subject Range Query Range Percent Splice Strand
VhaM8.9-RA 1..963 53..1015 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:51:24 Download gff for LD30634.complete
Subject Subject Range Query Range Percent Splice Strand
CG8444-RA 1..963 53..1015 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:24:03 Download gff for LD30634.complete
Subject Subject Range Query Range Percent Splice Strand
VhaM8.9-RA 1..963 53..1015 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:15:54 Download gff for LD30634.complete
Subject Subject Range Query Range Percent Splice Strand
CG8444-RA 33..1465 1..1433 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:19:47 Download gff for LD30634.complete
Subject Subject Range Query Range Percent Splice Strand
VhaM8.9-RA 33..1465 1..1433 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:02:27 Download gff for LD30634.complete
Subject Subject Range Query Range Percent Splice Strand
VhaM8.9-RA 36..1468 1..1433 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:51:24 Download gff for LD30634.complete
Subject Subject Range Query Range Percent Splice Strand
CG8444-RA 33..1465 1..1433 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:24:03 Download gff for LD30634.complete
Subject Subject Range Query Range Percent Splice Strand
VhaM8.9-RA 36..1468 1..1433 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:07:48 Download gff for LD30634.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9260673..9260767 1..95 100 -> Plus
3R 9260991..9261343 96..448 100 -> Plus
3R 9261606..9262590 449..1433 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:07:48 Download gff for LD30634.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9260673..9260767 1..95 100 -> Plus
3R 9260991..9261343 96..448 100 -> Plus
3R 9261606..9262590 449..1433 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:07:48 Download gff for LD30634.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9260673..9260767 1..95 100 -> Plus
3R 9260991..9261343 96..448 100 -> Plus
3R 9261606..9262590 449..1433 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:02:27 Download gff for LD30634.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5086395..5086489 1..95 100 -> Plus
arm_3R 5086713..5087065 96..448 100 -> Plus
arm_3R 5087328..5088312 449..1433 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:29:50 Download gff for LD30634.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9001504..9001598 1..95 100 -> Plus
3R 9001822..9002174 96..448 100 -> Plus
3R 9002437..9003421 449..1433 99   Plus

LD30634.pep Sequence

Translation from 52 to 1014

> LD30634.pep
MLRVFVIFSLFIAAINASGEFTVLNRPKAISFKGNDALESHYVGDVLYAS
MGNAVSGDTNWNGLTINDPFNLAKGVILVHVQGIGHVTTAGNVKTYELTG
SGTDASLNALAAELEAANEPVCDINFEQFDDGVQAWKSCFGDFEAPAAKP
TKHLNPSLHTADKQFLQEVGFINSAADHLAEMAKPSNVLMLRVSVDGVAK
AHGEKSVAVEEANKLLSAAISRLLAASQKSSDSVLFVQTTEKDVAASRAK
RDTIAASTTNPYNLAVYYGSDYPVIFNIILWFMVVFGLSLLAICYAIAAM
DPGRDSIIYRMTSTRIKKDN*

LD30634.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16587-PA 320 GF16587-PA 1..320 1..320 1489 85.6 Plus
Dana\GF16072-PA 300 GF16072-PA 197..281 6..90 336 70.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15974-PA 320 GG15974-PA 1..320 1..320 1563 95.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14333-PA 320 GH14333-PA 1..320 1..320 1236 76.9 Plus
Dgri\GH20389-PA 314 GH20389-PA 1..306 1..315 681 43.4 Plus
Dgri\GH17987-PA 140 GH17987-PA 1..133 1..133 452 72.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
ATP6AP2-PA 320 CG8444-PA 1..320 1..320 1622 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10428-PA 319 GI10428-PA 1..319 1..320 1258 76.6 Plus
Dmoj\GI20060-PA 309 GI20060-PA 3..305 13..320 586 37.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13947-PA 320 GL13947-PA 1..320 1..320 1356 78.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21083-PA 320 GA21083-PA 1..320 1..320 1356 78.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23791-PA 320 GM23791-PA 1..320 1..320 1694 99.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18602-PA 320 GD18602-PA 1..320 1..320 1688 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10644-PA 319 GJ10644-PA 1..319 1..320 1312 80 Plus
Dvir\GJ14951-PA 323 GJ14951-PA 1..310 1..315 641 44.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14261-PA 322 GK14261-PA 1..322 1..320 1284 78 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25938-PA 320 GE25938-PA 1..320 1..320 1673 98.1 Plus

LD30634.hyp Sequence

Translation from 52 to 1014

> LD30634.hyp
MLRVFVIFSLFIAAINASGEFTVLNRPKAISFKGNDALESHYVGDVLYAS
MGNAVSGDTNWNGLTINDPFNLAKGVILVHVQGIGHVTTAGNVKTYELTG
SGTDASLNALAAELEAANEPVCDINFEQFDDGVQAWKSCFGDFEAPAAKP
TKHLNPSLHTADKQFLQEVGFINSAADHLAEMAKPSNVLMLRVSVDGVAK
AHGEKSVAVEEANKLLSAAISRLLAASQKSSDSVLFVQTTEKDVAASRAK
RDTIAASTTNPYNLAVYYGSDYPVIFNIILWFMVVFGLSLLAICYAIAAM
DPGRDSIIYRMTSTRIKKDN*

LD30634.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
VhaM8.9-PA 320 CG8444-PA 1..320 1..320 1622 100 Plus