Clone LD30731 Report

Search the DGRC for LD30731

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:307
Well:31
Vector:pOT2
Associated Gene/TranscriptNAA20-RA
Protein status:LD30731.pep: gold
Preliminary Size:1365
Sequenced Size:1190

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14222 2001-01-01 Release 2 assignment
CG14222 2001-10-10 Blastp of sequenced clone
CG14222 2003-01-01 Sim4 clustering to Release 3
CG14222 2008-04-29 Release 5.5 accounting
CG14222 2008-08-15 Release 5.9 accounting
CG14222 2008-12-18 5.12 accounting

Clone Sequence Records

LD30731.complete Sequence

1190 bp (1190 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061383

> LD30731.complete
TATAGGAGCAATAAAAAGGATCGGATTAGCCGAGATTAAGTGATAAGATG
ACCACGTTGCGACCCTTCACCTGCGACGACCTCTTTAAGTTCAACAATGT
AAACTTTGACCCACTTACGGAGACCTACGGGCTGTCCTTCTACACCCAGT
ACCTGGCCAAGTGGCCGGAGTACTTTCAGCTTGCGGAGTCGCCCAGCGGA
CAAATAATGGGCTACATCATGGGCAAGGTGGAGGGACACCTGGACAACTG
GCACGGACACGTGACTGCGCTGACCGTCTCGCCCGACTACCGGCGCCTTG
GTCTGGCTGCGCTGCTCATGAGTTTCCTGGAGGACATTTCGGAGAAAAAG
CGAGCATACTTTGTGGATCTTTTTGTGAGGAAGAGCAACCAGGTGGCAAT
AAACATGTACACGAACCTTGGCTACATCATATACCGCACCATACTTGAGT
ACTACTCCGGCGACCAGGACGAGGATGCGTACGACATGAGAAAGGCCTTA
TCCAGGGACGTCAACAAAAAGTCGGTCATACCGTACACGCAGCCTGTACG
ACTGGAACATATAGATATGAATTGATACGATATCAACCCAGTAGCGCCCG
AAAACGCATTTATGTCTAACTAATCCCGATCCACCATTTGAAATGGGCGC
GAGCGCATCACTTCGCAGCCCATTGAATTCTAGTTAATTTAGCAATGTAA
ATAACCCATAATCCCGTGATCTGCCCGGTGATAACATGCGATTCGATTAT
GACCGGATTCCCATCCCGCTTGCGAACCAATCCCCCGGCGCCAGTATTTG
CGTGCATTATTTCCCAACCGAAACTAAGCCTGTAATTAAGTTACATGACC
GCTCCGTTACCAAATTCAGCACAAATTCTCGATAATTCTATTGACTTTGA
AATTATTTAAAGATTTCGTAAGCCGATGCGTAAATAACCACAAACACAAA
GATTGTTCCACAGTTCTGAAGATCACAATGCGCGAGCTGCGCAGACAAAT
GCGACACGATCACTAAGTGGAACGATTCGCGGCGGATGTGGGCATAGCCA
CAGCCATCGCCATCGCCATCGCCATGTGCTTTATCGACCGATTCCCATTT
ACTAATGTGCTGCTGCATAGAAAACCATTTTGAGAATAAAAAGAAAATAA
ACCCCCTGGCATATAAAGTTCAAAAAAAAAAAAAAAAAAA

LD30731.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG14222-RA 1351 CG14222-RA 61..1233 1..1173 5865 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19510569..19511057 971..483 2445 100 Minus
chrX 22417052 chrX 19510243..19510444 1171..970 1010 100 Minus
chrX 22417052 chrX 19511127..19511263 483..347 685 100 Minus
chrX 22417052 chrX 19511329..19511458 346..217 650 100 Minus
chrX 22417052 chrX 19511521..19511636 216..101 580 100 Minus
chrX 22417052 chrX 19511705..19511804 100..1 500 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:24:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19621777..19622265 971..483 2445 100 Minus
X 23542271 X 19621449..19621652 1173..970 1020 100 Minus
X 23542271 X 19622335..19622471 483..347 685 100 Minus
X 23542271 X 19622537..19622666 346..217 650 100 Minus
X 23542271 X 19622729..19622844 216..101 580 100 Minus
X 23542271 X 19622913..19623012 100..1 500 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19629875..19630363 971..483 2445 100 Minus
X 23527363 X 19629547..19629750 1173..970 1020 100 Minus
X 23527363 X 19630433..19630569 483..347 685 100 Minus
X 23527363 X 19630635..19630764 346..217 650 100 Minus
X 23527363 X 19630827..19630942 216..101 580 100 Minus
X 23527363 X 19631011..19631110 100..1 500 100 Minus
Blast to na_te.dros performed on 2019-03-15 18:28:30 has no hits.

LD30731.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:29:34 Download gff for LD30731.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19510243..19510442 972..1171 100 <- Minus
chrX 19510569..19511056 484..971 100 <- Minus
chrX 19511127..19511263 347..483 100 <- Minus
chrX 19511329..19511458 217..346 100 <- Minus
chrX 19511521..19511636 101..216 100 <- Minus
chrX 19511705..19511804 1..100 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:11:39 Download gff for LD30731.complete
Subject Subject Range Query Range Percent Splice Strand
CG14222-RA 1..528 48..575 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:55:35 Download gff for LD30731.complete
Subject Subject Range Query Range Percent Splice Strand
CG14222-RA 1..528 48..575 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:05:35 Download gff for LD30731.complete
Subject Subject Range Query Range Percent Splice Strand
NAA20-RA 1..528 48..575 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:24:38 Download gff for LD30731.complete
Subject Subject Range Query Range Percent Splice Strand
CG14222-RA 1..528 48..575 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:04:45 Download gff for LD30731.complete
Subject Subject Range Query Range Percent Splice Strand
NAA20-RA 1..528 48..575 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:41:21 Download gff for LD30731.complete
Subject Subject Range Query Range Percent Splice Strand
CG14222-RA 61..1231 1..1171 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:55:35 Download gff for LD30731.complete
Subject Subject Range Query Range Percent Splice Strand
CG14222-RA 61..1231 1..1171 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:05:35 Download gff for LD30731.complete
Subject Subject Range Query Range Percent Splice Strand
NAA20-RA 63..1233 1..1171 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:24:38 Download gff for LD30731.complete
Subject Subject Range Query Range Percent Splice Strand
CG14222-RA 61..1231 1..1171 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:04:45 Download gff for LD30731.complete
Subject Subject Range Query Range Percent Splice Strand
NAA20-RA 63..1233 1..1171 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:29:34 Download gff for LD30731.complete
Subject Subject Range Query Range Percent Splice Strand
X 19622335..19622471 347..483 100 <- Minus
X 19622537..19622666 217..346 100 <- Minus
X 19622729..19622844 101..216 100 <- Minus
X 19622913..19623012 1..100 100   Minus
X 19621451..19621650 972..1171 100 <- Minus
X 19621777..19622264 484..971 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:29:34 Download gff for LD30731.complete
Subject Subject Range Query Range Percent Splice Strand
X 19622335..19622471 347..483 100 <- Minus
X 19622537..19622666 217..346 100 <- Minus
X 19622729..19622844 101..216 100 <- Minus
X 19622913..19623012 1..100 100   Minus
X 19621451..19621650 972..1171 100 <- Minus
X 19621777..19622264 484..971 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:29:34 Download gff for LD30731.complete
Subject Subject Range Query Range Percent Splice Strand
X 19622335..19622471 347..483 100 <- Minus
X 19622537..19622666 217..346 100 <- Minus
X 19622729..19622844 101..216 100 <- Minus
X 19622913..19623012 1..100 100   Minus
X 19621451..19621650 972..1171 100 <- Minus
X 19621777..19622264 484..971 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:05:35 Download gff for LD30731.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19516762..19516877 101..216 100 <- Minus
arm_X 19516946..19517045 1..100 100   Minus
arm_X 19515484..19515683 972..1171 100 <- Minus
arm_X 19515810..19516297 484..971 100 <- Minus
arm_X 19516368..19516504 347..483 100 <- Minus
arm_X 19516570..19516699 217..346 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:01:52 Download gff for LD30731.complete
Subject Subject Range Query Range Percent Splice Strand
X 19629875..19630362 484..971 100 <- Minus
X 19630433..19630569 347..483 100 <- Minus
X 19630635..19630764 217..346 100 <- Minus
X 19630827..19630942 101..216 100 <- Minus
X 19631011..19631110 1..100 100   Minus
X 19629549..19629748 972..1171 100 <- Minus

LD30731.hyp Sequence

Translation from 47 to 574

> LD30731.hyp
MTTLRPFTCDDLFKFNNVNFDPLTETYGLSFYTQYLAKWPEYFQLAESPS
GQIMGYIMGKVEGHLDNWHGHVTALTVSPDYRRLGLAALLMSFLEDISEK
KRAYFVDLFVRKSNQVAINMYTNLGYIIYRTILEYYSGDQDEDAYDMRKA
LSRDVNKKSVIPYTQPVRLEHIDMN*

LD30731.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:05:38
Subject Length Description Subject Range Query Range Score Percent Strand
NAA20-PD 175 CG14222-PD 1..175 1..175 929 100 Plus
NAA20-PC 175 CG14222-PC 1..175 1..175 929 100 Plus
NAA20-PA 175 CG14222-PA 1..175 1..175 929 100 Plus
NAA20-PB 180 CG14222-PB 1..172 1..172 888 96.5 Plus
CG31851-PB 204 CG31851-PB 1..167 1..160 343 40 Plus

LD30731.pep Sequence

Translation from 47 to 574

> LD30731.pep
MTTLRPFTCDDLFKFNNVNFDPLTETYGLSFYTQYLAKWPEYFQLAESPS
GQIMGYIMGKVEGHLDNWHGHVTALTVSPDYRRLGLAALLMSFLEDISEK
KRAYFVDLFVRKSNQVAINMYTNLGYIIYRTILEYYSGDQDEDAYDMRKA
LSRDVNKKSVIPYTQPVRLEHIDMN*

LD30731.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20277-PA 175 GF20277-PA 1..175 1..175 921 97.7 Plus
Dana\GF21684-PA 165 GF21684-PA 1..164 1..160 349 45.7 Plus
Dana\GF23106-PA 205 GF23106-PA 1..167 1..160 346 44.1 Plus
Dana\GF10586-PA 201 GF10586-PA 2..153 3..151 229 37.7 Plus
Dana\GF13618-PA 197 GF13618-PA 9..157 10..152 165 32.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18041-PA 175 GG18041-PA 1..175 1..175 935 99.4 Plus
Dere\GG10216-PA 162 GG10216-PA 1..160 1..156 320 43.5 Plus
Dere\GG23832-PA 203 GG23832-PA 1..166 1..160 316 38.5 Plus
Dere\GG15426-PA 196 GG15426-PA 2..154 3..152 232 38.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24558-PA 175 GH24558-PA 1..175 1..175 914 96.6 Plus
Dgri\GH22808-PA 169 GH22808-PA 1..165 1..164 658 74.5 Plus
Dgri\GH25096-PA 182 GH25096-PA 1..163 1..160 423 50.9 Plus
Dgri\GH16055-PA 200 GH16055-PA 2..166 3..162 226 36.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
Naa20A-PD 175 CG14222-PD 1..175 1..175 929 100 Plus
Naa20A-PC 175 CG14222-PC 1..175 1..175 929 100 Plus
Naa20A-PA 175 CG14222-PA 1..175 1..175 929 100 Plus
Naa20A-PB 180 CG14222-PB 1..172 1..172 888 96.5 Plus
Naa20B-PB 204 CG31851-PB 1..167 1..160 343 40 Plus
Naa20B-PA 204 CG31851-PA 1..167 1..160 343 40 Plus
CG31730-PA 162 CG31730-PA 1..157 1..153 327 45.2 Plus
vnc-PB 196 CG11989-PB 9..154 10..152 225 38.5 Plus
vnc-PC 196 CG11989-PC 9..154 10..152 225 38.5 Plus
vnc-PD 196 CG11989-PD 9..154 10..152 225 38.5 Plus
vnc-PE 196 CG11989-PE 9..154 10..152 225 38.5 Plus
vnc-PA 196 CG11989-PA 9..154 10..152 225 38.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16318-PA 175 GI16318-PA 1..175 1..175 901 95.4 Plus
Dmoj\GI20782-PA 183 GI20782-PA 1..163 1..161 435 51.5 Plus
Dmoj\GI20771-PA 204 GI20771-PA 1..164 1..156 333 44.6 Plus
Dmoj\GI12318-PA 196 GI12318-PA 2..153 3..151 226 37.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27103-PA 175 GL27103-PA 1..175 1..175 925 98.3 Plus
Dper\GL23518-PA 178 GL23518-PA 1..169 1..169 847 91.7 Plus
Dper\GL26694-PA 182 GL26694-PA 1..178 1..173 422 50 Plus
Dper\GL26319-PA 203 GL26319-PA 1..176 1..167 318 39.1 Plus
Dper\GL12574-PA 160 GL12574-PA 9..141 10..137 207 37.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22686-PA 175 GA22686-PA 1..175 1..175 925 98.3 Plus
Dpse\GA27286-PA 178 GA27286-PA 1..169 1..169 839 91.1 Plus
Dpse\GA16428-PA 182 GA16428-PA 1..178 1..173 420 50 Plus
Dpse\GA16524-PA 203 GA16524-PA 1..176 1..167 311 38 Plus
Dpse\GA11315-PA 201 GA11315-PA 2..154 3..152 232 38.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22725-PA 122 GM22725-PA 1..122 1..175 518 63.4 Plus
Dsec\GM10355-PA 204 GM10355-PA 1..167 1..160 342 41.2 Plus
Dsec\GM25705-PA 162 GM25705-PA 1..157 1..153 330 45.9 Plus
Dsec\GM25199-PA 196 GM25199-PA 2..154 3..152 225 37.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23882-PA 204 GD23882-PA 1..167 1..160 339 41.2 Plus
Dsim\GD22076-PA 162 GD22076-PA 1..157 1..153 331 45.9 Plus
Dsim\GD14230-PA 196 GD14230-PA 2..154 3..152 225 37.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15656-PA 175 GJ15656-PA 1..175 1..175 915 97.1 Plus
Dvir\GJ17963-PA 184 GJ17963-PA 1..173 1..169 444 52.6 Plus
Dvir\GJ17962-PA 178 GJ17962-PA 1..165 1..157 313 40.5 Plus
Dvir\GJ13255-PA 195 GJ13255-PA 2..154 3..152 225 37.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24995-PA 187 GK24995-PA 1..172 1..172 870 93 Plus
Dwil\GK15295-PA 227 GK15295-PA 1..158 1..159 391 48.4 Plus
Dwil\GK19033-PA 196 GK19033-PA 1..160 1..160 286 38 Plus
Dwil\GK17457-PA 201 GK17457-PA 2..154 3..152 226 38.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17370-PA 175 GE17370-PA 1..175 1..175 935 99.4 Plus
Dyak\GE11776-PA 157 GE11776-PA 1..155 1..156 345 45.3 Plus
Dyak\GE18637-PA 204 GE18637-PA 1..167 1..160 339 40 Plus
Dyak\GE21734-PA 196 GE21734-PA 2..154 3..152 232 38.1 Plus