Clone LD30817 Report

Search the DGRC for LD30817

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:308
Well:17
Vector:pOT2
Associated Gene/TranscriptFK506-bp1-RA
Protein status:LD30817.pep: gold
Preliminary Size:1422
Sequenced Size:1332

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6226 2001-01-01 Release 2 assignment
CG6226 2002-03-19 Blastp of sequenced clone
CG6226 2003-01-01 Sim4 clustering to Release 3
FK506-bp1 2008-04-29 Release 5.5 accounting
FK506-bp1 2008-08-15 Release 5.9 accounting
FK506-bp1 2008-12-18 5.12 accounting

Clone Sequence Records

LD30817.complete Sequence

1332 bp (1332 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094814

> LD30817.complete
GCACATCACATCACTAGCGTCTGTGGTTCCGTTTCGTTTTAGCGAACTCA
ATTTCTCCTATTTTATATTGCATTTTCCGTTAAGAGTAGCCTACAATTCT
GCAAGATGTCGATGTTTTGGGGTTTGAACATGAAGCCTGAGCGCAAGTAC
TCGCAGACGATCATCAAGTCGTTCCACATCTCGGGCGTGGCACTCGACAA
GGGCCAGGAGGCCAAGTTGTACCTCGCTGCCGAGAAGCAGGAGTACATCG
TGGCCACCGTGACCAAGGCCATTCCACAGGTTGCGCTCGACCTGAACTTC
AGCAAGGGCGATCGCATCATGTTCTACACCGCCGGCGACGCCAGCGTTTC
TCTGTTGGGCTACTTGCACGACATTGATTCCGAAGATGATGAGGATGACG
ATCAAATGACGATCGAGAATTTGCTGAACTCCAAGGCGATCAAGAATAGC
AAAAAGTCTGAAGATGATGAGGATGAGAATGAGAGCGGCGAGGAGGACGA
GGAGGATACTGATGACGATAGCCAGATAATCGAGGAATACGAGTCCTTCC
TCGAAAATGGTGAGGAGGAAGATGACGACGATGTTGATGAGGATAACGAG
GAGAGTGGCGAGGAGGATGAACAGGACAGCGACGACTCCGAAGCTGAAGA
GGAACAGCCAAAGGCCAAGGTTGCCAAGCTCTCTCCTGGCGCTAGCGCCA
AGAAATCTGGCAAGGAGCAGAACGGTGTGGCCAAGAAGGAGGAGGCCAAG
CAGCAGCAAAAGAAGAAGGAGAAGCCAGAGGCCAAGAAGGAACAACCCAA
GGCCAAGGAGCCAGCCAAGCAGCAACCAGCTTCTAAGGATCCACGTACTA
TCACCGGAGGCGTGAAGATTGTGGATCAGGTCGTCGGCAAAGGCGAAGAA
GCCAAGCAGGGCAAACGCGTATCTGTTTACTACATCGGCCGCCTGCAGTC
GAACAACAAGACCTTCGACAGCCTCCTGAAGGGAAAACCATTTAAGTTCG
CCCTGGGCGGCGGAGAGGTCATCAAGGGCTGGGACGTGGGAGTCGCCGGC
ATGAAGGTGGGCGGCAAGCGAGTCATTACCTGCCCCCCGCACATGGCGTA
CGGCGCACGGGGAGCTCCACCGAAGATCGGACCGAACTCCACTCTCGTCT
TCGAAGTGGAACTGAAAGCTGTGCATTAGTGCACTATATTAACATCATAT
AGACTTGTAATCCTAAGTAAGTATCCACGTCGTACAACTTGATAAAAATG
TTAAATAAACTCTGTTTTCCGGCTGTTCATAAATCAACAGTTTTGTAGCA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD30817.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
FK506-bp1-RA 1393 FK506-bp1-RA 90..1390 1..1301 6490 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11156212..11157175 1297..334 4820 100 Minus
chr3R 27901430 chr3R 11157241..11157455 335..121 1075 100 Minus
chr3R 27901430 chr3R 11157637..11157759 123..1 615 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:24:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:43:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15331582..15332549 1301..334 4825 99.9 Minus
3R 32079331 3R 15332615..15332829 335..121 1075 100 Minus
3R 32079331 3R 15333011..15333133 123..1 615 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15072413..15073380 1301..334 4825 99.8 Minus
3R 31820162 3R 15073446..15073660 335..121 1075 100 Minus
3R 31820162 3R 15073842..15073964 123..1 615 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:43:23 has no hits.

LD30817.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:44:33 Download gff for LD30817.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11157639..11157759 1..121 100   Minus
chr3R 11157051..11157174 335..458 100 <- Minus
chr3R 11157242..11157454 122..334 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:11:42 Download gff for LD30817.complete
Subject Subject Range Query Range Percent Splice Strand
FK506-bp1-RA 1..1074 106..1179 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:28:32 Download gff for LD30817.complete
Subject Subject Range Query Range Percent Splice Strand
FK506-bp1-RA 1..1074 106..1179 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:39:29 Download gff for LD30817.complete
Subject Subject Range Query Range Percent Splice Strand
FK506-bp1-RA 1..1074 106..1179 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:02:57 Download gff for LD30817.complete
Subject Subject Range Query Range Percent Splice Strand
FK506-bp1-RA 1..1074 106..1179 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:25:08 Download gff for LD30817.complete
Subject Subject Range Query Range Percent Splice Strand
FK506-bp1-RA 1..1074 106..1179 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:54:59 Download gff for LD30817.complete
Subject Subject Range Query Range Percent Splice Strand
FK506-bp1-RA 10..1308 1..1299 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:28:31 Download gff for LD30817.complete
Subject Subject Range Query Range Percent Splice Strand
FK506-bp1-RA 10..1308 1..1299 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:39:29 Download gff for LD30817.complete
Subject Subject Range Query Range Percent Splice Strand
FK506-bp1-RA 1..1299 1..1299 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:02:57 Download gff for LD30817.complete
Subject Subject Range Query Range Percent Splice Strand
FK506-bp1-RA 10..1308 1..1299 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:25:08 Download gff for LD30817.complete
Subject Subject Range Query Range Percent Splice Strand
FK506-bp1-RA 1..1299 1..1299 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:44:33 Download gff for LD30817.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15331584..15332548 335..1299 99 <- Minus
3R 15332616..15332828 122..334 100 <- Minus
3R 15333013..15333133 1..121 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:44:33 Download gff for LD30817.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15331584..15332548 335..1299 99 <- Minus
3R 15332616..15332828 122..334 100 <- Minus
3R 15333013..15333133 1..121 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:44:33 Download gff for LD30817.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15331584..15332548 335..1299 99 <- Minus
3R 15332616..15332828 122..334 100 <- Minus
3R 15333013..15333133 1..121 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:39:29 Download gff for LD30817.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11158735..11158855 1..121 100   Minus
arm_3R 11157306..11158270 335..1299 99 <- Minus
arm_3R 11158338..11158550 122..334 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:36:22 Download gff for LD30817.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15073447..15073659 122..334 100 <- Minus
3R 15073844..15073964 1..121 100   Minus
3R 15072415..15073379 335..1299 99 <- Minus

LD30817.pep Sequence

Translation from 105 to 1178

> LD30817.pep
MSMFWGLNMKPERKYSQTIIKSFHISGVALDKGQEAKLYLAAEKQEYIVA
TVTKAIPQVALDLNFSKGDRIMFYTAGDASVSLLGYLHDIDSEDDEDDDQ
MTIENLLNSKAIKNSKKSEDDEDENESGEEDEEDTDDDSQIIEEYESFLE
NGEEEDDDDVDEDNEESGEEDEQDSDDSEAEEEQPKAKVAKLSPGASAKK
SGKEQNGVAKKEEAKQQQKKKEKPEAKKEQPKAKEPAKQQPASKDPRTIT
GGVKIVDQVVGKGEEAKQGKRVSVYYIGRLQSNNKTFDSLLKGKPFKFAL
GGGEVIKGWDVGVAGMKVGGKRVITCPPHMAYGARGAPPKIGPNSTLVFE
VELKAVH*

LD30817.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23032-PA 358 GF23032-PA 1..358 1..357 954 67.7 Plus
Dana\GF14673-PA 440 GF14673-PA 24..117 261..353 238 46.8 Plus
Dana\GF12094-PA 214 GF12094-PA 37..127 264..353 231 47.3 Plus
Dana\GF11585-PA 108 GF11585-PA 2..107 252..356 230 48.1 Plus
Dana\GF18389-PA 137 GF18389-PA 16..125 242..353 167 38.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20671-PA 355 GG20671-PA 1..355 1..357 1217 83.6 Plus
Dere\GG10059-PA 439 GG10059-PA 23..116 261..353 235 46.8 Plus
Dere\GG20775-PA 231 GG20775-PA 54..144 264..353 231 47.3 Plus
Dere\GG21957-PA 108 GG21957-PA 2..107 252..356 230 48.1 Plus
Dere\GG18343-PA 138 GG18343-PA 17..126 242..353 171 40.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21813-PA 365 GH21813-PA 1..365 1..357 769 56.6 Plus
Dgri\GH11297-PA 441 GH11297-PA 32..117 268..353 239 48.8 Plus
Dgri\GH23096-PA 108 GH23096-PA 2..107 252..356 234 49.1 Plus
Dgri\GH20056-PA 212 GH20056-PA 35..125 264..353 226 47.3 Plus
Dgri\GH18265-PA 138 GH18265-PA 37..130 264..356 165 39.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
Fkbp39-PA 357 CG6226-PA 1..357 1..357 1834 100 Plus
Fkbp12-PA 108 CG11001-PA 2..107 252..356 241 48.1 Plus
Fkbp59-PB 439 CG4535-PB 9..116 249..353 227 41.7 Plus
Fkbp59-PA 439 CG4535-PA 9..116 249..353 227 41.7 Plus
Fkbp14-PF 216 CG9847-PF 39..129 264..353 220 47.3 Plus
Fkbp14-PE 216 CG9847-PE 39..129 264..353 220 47.3 Plus
Fkbp14-PC 216 CG9847-PC 39..129 264..353 220 47.3 Plus
Fkbp14-PA 216 CG9847-PA 39..129 264..353 220 47.3 Plus
Fkbp14-PD 220 CG9847-PD 39..129 264..353 220 47.3 Plus
CG14715-PA 138 CG14715-PA 17..126 242..353 216 45.1 Plus
l(2)01289-PG 1191 CG9432-PG 857..1024 91..271 179 25.1 Plus
Aatf-PA 488 CG11188-PA 84..258 89..245 177 29.7 Plus
l(2)01289-PM 1193 CG9432-PM 857..1006 91..259 171 24.9 Plus
CG8108-PA 919 CG8108-PA 307..451 91..248 170 28.6 Plus
CG8108-PB 919 CG8108-PB 307..451 91..248 170 28.6 Plus
CG8108-PA 919 CG8108-PA 274..438 91..244 167 26.7 Plus
CG8108-PB 919 CG8108-PB 274..438 91..244 167 26.7 Plus
l(2)01289-PG 1191 CG9432-PG 785..881 88..188 166 32.7 Plus
l(2)01289-PM 1193 CG9432-PM 785..881 88..188 166 32.7 Plus
l(2)01289-PG 1191 CG9432-PG 812..905 91..183 160 37.9 Plus
l(2)01289-PM 1193 CG9432-PM 812..905 91..183 160 37.9 Plus
l(2)01289-PG 1191 CG9432-PG 770..866 88..184 158 34.2 Plus
l(2)01289-PM 1193 CG9432-PM 770..866 88..184 158 34.2 Plus
l(2)01289-PM 1193 CG9432-PM 827..1019 89..288 157 22.5 Plus
l(2)01289-PM 1193 CG9432-PM 869..987 88..227 157 28.4 Plus
Asph-PB 382 CG8421-PB 214..363 89..246 155 26.7 Plus
Asph-PJ 400 CG8421-PJ 232..381 89..246 155 26.7 Plus
Asph-PA 785 CG8421-PA 214..363 89..246 155 26.7 Plus
Asph-PH 803 CG8421-PH 232..381 89..246 155 26.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21928-PA 370 GI21928-PA 1..370 1..357 851 57.2 Plus
Dmoj\GI21730-PA 319 GI21730-PA 8..91 3..86 262 51.2 Plus
Dmoj\GI17716-PA 441 GI17716-PA 24..117 261..353 238 47.9 Plus
Dmoj\GI18922-PA 108 GI18922-PA 2..107 252..356 231 49.1 Plus
Dmoj\GI20465-PA 424 GI20465-PA 247..337 264..353 225 47.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24296-PA 342 GL24296-PA 1..342 1..357 980 66.9 Plus
Dper\GL18937-PA 440 GL18937-PA 24..117 261..353 238 47.9 Plus
Dper\GL17491-PA 214 GL17491-PA 37..127 264..353 232 47.3 Plus
Dper\GL17641-PA 108 GL17641-PA 2..107 252..356 225 48.1 Plus
Dper\GL22120-PA 139 GL22120-PA 37..127 264..353 163 41.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26561-PA 341 GA26561-PA 1..341 1..357 970 65.8 Plus
Dpse\GA18239-PA 440 GA18239-PA 24..117 261..353 238 47.9 Plus
Dpse\GA22070-PA 214 GA22070-PA 37..127 264..353 232 47.3 Plus
Dpse\GA10702-PA 108 GA10702-PA 2..107 252..356 225 48.1 Plus
Dpse\GA13197-PA 139 GA13197-PA 37..127 264..353 163 41.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25784-PA 349 GM25784-PA 1..349 1..357 1244 89.9 Plus
Dsec\GM17712-PA 439 GM17712-PA 23..116 261..353 240 47.9 Plus
Dsec\GM21945-PA 108 GM21945-PA 2..107 252..356 230 48.1 Plus
Dsec\GM15719-PA 231 GM15719-PA 54..144 264..353 230 47.3 Plus
Dsec\GM23968-PA 138 GM23968-PA 17..126 242..353 171 40.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:08:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20361-PA 348 GD20361-PA 1..348 1..357 1238 88.5 Plus
Dsim\GD23632-PA 402 GD23632-PA 23..116 261..353 238 47.9 Plus
Dsim\GD25197-PA 231 GD25197-PA 54..144 264..353 230 47.3 Plus
Dsim\GD11442-PA 137 GD11442-PA 2..89 252..338 180 44.3 Plus
Dsim\GD18774-PA 138 GD18774-PA 17..126 242..353 171 40.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14288-PA 359 GJ14288-PA 1..359 1..357 799 59.4 Plus
Dvir\GJ19050-PA 239 GJ19050-PA 1..97 1..97 287 50.5 Plus
Dvir\GJ19111-PA 931 GJ19111-PA 1..87 1..87 270 50.6 Plus
Dvir\GJ22316-PA 212 GJ22316-PA 35..125 264..353 234 49.5 Plus
Dvir\GJ19778-PA 108 GJ19778-PA 2..107 252..356 231 48.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11959-PA 358 GK11959-PA 1..358 1..357 901 64.1 Plus
Dwil\GK23813-PA 440 GK23813-PA 24..117 261..353 243 47.9 Plus
Dwil\GK20673-PA 108 GK20673-PA 2..107 252..356 232 49.1 Plus
Dwil\GK20742-PA 211 GK20742-PA 34..124 264..353 229 47.3 Plus
Dwil\GK22382-PA 139 GK22382-PA 38..128 264..353 168 41.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26389-PA 353 GE26389-PA 1..353 1..357 1222 88.2 Plus
Dyak\FKBP59-PA 439 GE18873-PA 23..116 261..353 235 46.8 Plus
Dyak\FK506-bp2-PA 108 GE12036-PA 2..107 252..356 230 48.1 Plus
Dyak\Fkbp13-PA 231 GE13712-PA 54..144 264..353 230 47.3 Plus
Dyak\GE24193-PA 138 GE24193-PA 17..129 242..356 173 39.7 Plus

LD30817.hyp Sequence

Translation from 105 to 1178

> LD30817.hyp
MSMFWGLNMKPERKYSQTIIKSFHISGVALDKGQEAKLYLAAEKQEYIVA
TVTKAIPQVALDLNFSKGDRIMFYTAGDASVSLLGYLHDIDSEDDEDDDQ
MTIENLLNSKAIKNSKKSEDDEDENESGEEDEEDTDDDSQIIEEYESFLE
NGEEEDDDDVDEDNEESGEEDEQDSDDSEAEEEQPKAKVAKLSPGASAKK
SGKEQNGVAKKEEAKQQQKKKEKPEAKKEQPKAKEPAKQQPASKDPRTIT
GGVKIVDQVVGKGEEAKQGKRVSVYYIGRLQSNNKTFDSLLKGKPFKFAL
GGGEVIKGWDVGVAGMKVGGKRVITCPPHMAYGARGAPPKIGPNSTLVFE
VELKAVH*

LD30817.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
FK506-bp1-PA 357 CG6226-PA 1..357 1..357 1834 100 Plus
FK506-bp2-PA 108 CG11001-PA 2..107 252..356 241 48.1 Plus
Fkbp14-PF 216 CG9847-PF 39..129 264..353 220 47.3 Plus
Fkbp14-PE 216 CG9847-PE 39..129 264..353 220 47.3 Plus
CG14715-PA 138 CG14715-PA 17..126 242..353 216 45.1 Plus