Clone LD30822 Report

Search the DGRC for LD30822

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:308
Well:22
Vector:pOT2
Associated Gene/TranscriptCG6293-RA
Protein status:LD30822.pep: gold
Preliminary Size:2393
Sequenced Size:2196

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6293 2001-01-01 Release 2 assignment
CG6293 2001-11-09 Blastp of sequenced clone
CG6293 2003-01-01 Sim4 clustering to Release 3
CG6293 2008-04-29 Release 5.5 accounting
CG6293 2008-08-15 Release 5.9 accounting
CG6293 2008-12-18 5.12 accounting

Clone Sequence Records

LD30822.complete Sequence

2196 bp (2196 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069570

> LD30822.complete
CTTTGTCGCGCTCGGACGTACAGCGGAATTCTTCGGGAGTCTTTTCCCGT
GCGTTAGCCCAATTAGTTTATGGCGGATATAAAGTGTGAGCTCGCCTGAT
CATGGAGCTGAACAATGTTACCATCGAGGACGCCACAGATGCTTCCAAGT
CCTACTCTCAAGCAGCTAACACGCCTCCAAGTAATGAGAAACCCAAGCCG
CAACTGCTCTACGCCATCAACGATAATCCCCCATGGTACTTGAGCATCTT
CCTCGCATTCCAGCACTACCTGACCATGATTGGAGCCATTGTTTCCATAC
CTTTCATCCTGACGCCGGCGTTGTGCATGTCCGATGAGGACGCCAACCGG
GGCATCATCATCTCTACGATGATCTTCGTCACGGGCATCGTTACCTACTT
CCAGGCCACGTGGGGCGTCCGTTTGCCCATTGTTCAGGGCGGAACTATAT
CGTTCTTGGTGCCCACCCTTGCCATCTTGGCCCTGCCGCAGTGGAAGTGC
CCGGAGCAAGCCGTAATGGATGCCATGGACGAGGCTGAGCGGGAGGAACT
ATGGCAAGTGCGTATGCGGGAGCTATCCGGCGCTATTGCCGTGTCCGCCA
TGGTGCAAGTTATCCTGGGCTACACTGGTCTGGTGGGAAAAATCCTTAAG
TACGTAACTCCATTGACCATTGTACCCACTGTGTCCCTGGTGGGTCTTAC
CCTATTCGAGCACGCAGCTGAAACCGCATCCAAGCATTGGGGCATTGCTG
TGGGAACCACTGGAATGCTGACACTCTTTTCGCAAATAATGTCGAATGTT
CCCGTGCCTATCTTGGCCTACCGCAAGGGTCACGGCTTGGAAATTCGCCA
GTTCCAGTTGTTCCGCCTCTTTCCCGTCCTGCTGACCATCATGATAATGT
GGGGTCTGTGCGGAATTCTGACTGCTACGGATGTCTTTCCTCCGTCACAT
CCTTCTCGCACCGATGTTCGCCTGAATGTGCTGACCAGTGCAAAGTGGTT
CTATGTCCCGTATCCGGGACAGTTTGGCTGGCCATCGGTGACGCTGTCCG
GCGTGCTTGGCATGTTGGCCGGAGTACTTGCCTGTACGGTGGAGTCACTT
AGTTACTATCCAACGGTGTCACAGATGTCCGGCGCCCACTCGCCTCCGCT
CCATGCGATCAATCGCGGGATCGGTACCGAGGGCTTTGGCACTGTCCTCG
CCGGTCTGTGGGGAGCTGGAAATGGAACCAATACCTTTGGAGAGAATGTT
GGCGCCATCGGGGTCACCAAGATTGGATCCCGACGTGTAATACAGTGGGC
TGCCTTGATAATGGTCCTCCAGGGGGTAATTGGAAAGTTTGGAGCCATTT
TCATTCTCATTCCCGACTCGGTGGTGGGCGGAATCTTTTGTGTGATGTTT
GGCATGATTATAGCTTTTGGGCTATCCACCTTGCAGTATGTGGATCTGCG
ATCCGCAAGGAATCTTTACATATTGGGGCTCTCAATATTTTTCCCGATGG
TATTGTGCCGCTGGATGCAGAAGAACCCTGGAGCTATTGACACCGGAAAC
AAGACCGTGGACTCAACGTTATCGGTGCTACTGGGCACTACAATTCTCGT
GGGTGGAGTTTTGGGATGCTTGCTGGACAATATAATCCCAGGGACGCCGG
AGGAGAGGGGCCTAATCGACTGGGCAAACGAGATGCCCCTGGGCGATGAT
AATGTTAATGATGGCACAGCCACCGACTACGATTTTCCACTTGGCATGGA
TGCCATTCGTCGTTGGAAGTGGACCTACTATATTCCGTTCATGCCGACTT
ACAAGCTCCAGAAGCAAAGCTGATCGTGGGAAAAAATGCAAATAAGAGCC
ATTCAATTGGTGACTTGGTTTTTATTTATTTTTAGAAAACACTTTTCGTG
CTCACGCTCTAATTACAATTTGAACTTCGAATTCGAATGCTACCCAAAAC
TCTAGATCTATTATTTTTTGTTCCGTGTTTCTGTTAATTTGCTTTTTAAA
TTCGCTTATTGTTTGTTGCTACGATTACCTAACACTCTTCCGTTTCGCTA
CCAACTCGCATATTTTCTATTATTTTGCAATAACATCAATAGACCTAGCA
AACGAAAGTTGTCGTTATTAAACTCTAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD30822.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG6293-RA 2733 CG6293-RA 151..2277 1..2127 10635 100 Plus
CG6293.a 2198 CG6293.a 206..2198 135..2127 9965 100 Plus
CG6293.a 2198 CG6293.a 18..151 1..134 670 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 6134010..6134866 2126..1270 4270 99.9 Minus
chr3R 27901430 chr3R 6135646..6136265 754..135 3100 100 Minus
chr3R 27901430 chr3R 6134929..6135446 1271..754 2575 99.8 Minus
chr3R 27901430 chr3R 6137209..6137342 134..1 655 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:24:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10308262..10309119 2127..1270 4290 100 Minus
3R 32079331 3R 10309899..10310518 754..135 3100 100 Minus
3R 32079331 3R 10309182..10309699 1271..754 2590 100 Minus
3R 32079331 3R 10311462..10311595 134..1 670 100 Minus
2R 25286936 2R 20600274..20600327 2180..2127 270 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10049093..10049950 2127..1270 4290 100 Minus
3R 31820162 3R 10050730..10051349 754..135 3100 100 Minus
3R 31820162 3R 10050013..10050530 1271..754 2590 100 Minus
3R 31820162 3R 10052293..10052426 134..1 670 100 Minus
Blast to na_te.dros performed on 2019-03-16 02:28:47 has no hits.

LD30822.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:29:27 Download gff for LD30822.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 6134010..6134864 1272..2126 99 <- Minus
chr3R 6134929..6135445 755..1271 99 <- Minus
chr3R 6135646..6136265 135..754 100 <- Minus
chr3R 6137209..6137342 1..134 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:11:43 Download gff for LD30822.complete
Subject Subject Range Query Range Percent Splice Strand
CG6293-RA 1..1722 102..1823 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:32:51 Download gff for LD30822.complete
Subject Subject Range Query Range Percent Splice Strand
CG6293-RA 1..1722 102..1823 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:36:33 Download gff for LD30822.complete
Subject Subject Range Query Range Percent Splice Strand
CG6293-RA 1..1722 102..1823 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:00:27 Download gff for LD30822.complete
Subject Subject Range Query Range Percent Splice Strand
CG6293-RA 1..1722 102..1823 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:12:28 Download gff for LD30822.complete
Subject Subject Range Query Range Percent Splice Strand
CG6293-RA 1..1722 102..1823 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:11:44 Download gff for LD30822.complete
Subject Subject Range Query Range Percent Splice Strand
CG6293-RA 1..2126 1..2126 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:32:51 Download gff for LD30822.complete
Subject Subject Range Query Range Percent Splice Strand
CG6293-RA 1..2126 1..2126 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:36:33 Download gff for LD30822.complete
Subject Subject Range Query Range Percent Splice Strand
CG6293-RA 19..2144 1..2126 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:00:27 Download gff for LD30822.complete
Subject Subject Range Query Range Percent Splice Strand
CG6293-RA 1..2126 1..2126 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:12:28 Download gff for LD30822.complete
Subject Subject Range Query Range Percent Splice Strand
CG6293-RA 19..2144 1..2126 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:29:27 Download gff for LD30822.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10308263..10309117 1272..2126 100 <- Minus
3R 10309182..10309698 755..1271 100 <- Minus
3R 10309899..10310518 135..754 100 <- Minus
3R 10311462..10311595 1..134 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:29:27 Download gff for LD30822.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10308263..10309117 1272..2126 100 <- Minus
3R 10309182..10309698 755..1271 100 <- Minus
3R 10309899..10310518 135..754 100 <- Minus
3R 10311462..10311595 1..134 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:29:27 Download gff for LD30822.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10308263..10309117 1272..2126 100 <- Minus
3R 10309182..10309698 755..1271 100 <- Minus
3R 10309899..10310518 135..754 100 <- Minus
3R 10311462..10311595 1..134 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:36:33 Download gff for LD30822.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6137184..6137317 1..134 100   Minus
arm_3R 6133985..6134839 1272..2126 100 <- Minus
arm_3R 6134904..6135420 755..1271 100 <- Minus
arm_3R 6135621..6136240 135..754 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:37:09 Download gff for LD30822.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10049094..10049948 1272..2126 100 <- Minus
3R 10050013..10050529 755..1271 100 <- Minus
3R 10050730..10051349 135..754 100 <- Minus
3R 10052293..10052426 1..134 100   Minus

LD30822.pep Sequence

Translation from 101 to 1822

> LD30822.pep
MELNNVTIEDATDASKSYSQAANTPPSNEKPKPQLLYAINDNPPWYLSIF
LAFQHYLTMIGAIVSIPFILTPALCMSDEDANRGIIISTMIFVTGIVTYF
QATWGVRLPIVQGGTISFLVPTLAILALPQWKCPEQAVMDAMDEAEREEL
WQVRMRELSGAIAVSAMVQVILGYTGLVGKILKYVTPLTIVPTVSLVGLT
LFEHAAETASKHWGIAVGTTGMLTLFSQIMSNVPVPILAYRKGHGLEIRQ
FQLFRLFPVLLTIMIMWGLCGILTATDVFPPSHPSRTDVRLNVLTSAKWF
YVPYPGQFGWPSVTLSGVLGMLAGVLACTVESLSYYPTVSQMSGAHSPPL
HAINRGIGTEGFGTVLAGLWGAGNGTNTFGENVGAIGVTKIGSRRVIQWA
ALIMVLQGVIGKFGAIFILIPDSVVGGIFCVMFGMIIAFGLSTLQYVDLR
SARNLYILGLSIFFPMVLCRWMQKNPGAIDTGNKTVDSTLSVLLGTTILV
GGVLGCLLDNIIPGTPEERGLIDWANEMPLGDDNVNDGTATDYDFPLGMD
AIRRWKWTYYIPFMPTYKLQKQS*

LD30822.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17530-PA 567 GF17530-PA 1..567 1..573 2826 93.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17290-PA 573 GG17290-PA 1..573 1..573 2990 98.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18455-PA 588 GH18455-PA 1..588 1..573 2689 87.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6293-PB 573 CG6293-PB 1..573 1..573 2994 100 Plus
CG6293-PA 573 CG6293-PA 1..573 1..573 2994 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24032-PA 587 GI24032-PA 1..587 1..573 2709 88.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23836-PA 588 GL23836-PA 1..588 1..573 2777 90 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19493-PB 574 GA19493-PB 1..574 1..573 2820 92.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26175-PA 573 GM26175-PA 1..573 1..573 2990 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20724-PA 573 GD20724-PA 1..573 1..573 3001 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23662-PA 582 GJ23662-PA 1..582 1..573 2649 88.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14417-PA 585 GK14417-PA 1..585 1..573 2700 89.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24691-PA 573 GE24691-PA 1..573 1..573 2982 98.3 Plus

LD30822.hyp Sequence

Translation from 101 to 1822

> LD30822.hyp
MELNNVTIEDATDASKSYSQAANTPPSNEKPKPQLLYAINDNPPWYLSIF
LAFQHYLTMIGAIVSIPFILTPALCMSDEDANRGIIISTMIFVTGIVTYF
QATWGVRLPIVQGGTISFLVPTLAILALPQWKCPEQAVMDAMDEAEREEL
WQVRMRELSGAIAVSAMVQVILGYTGLVGKILKYVTPLTIVPTVSLVGLT
LFEHAAETASKHWGIAVGTTGMLTLFSQIMSNVPVPILAYRKGHGLEIRQ
FQLFRLFPVLLTIMIMWGLCGILTATDVFPPSHPSRTDVRLNVLTSAKWF
YVPYPGQFGWPSVTLSGVLGMLAGVLACTVESLSYYPTVSQMSGAHSPPL
HAINRGIGTEGFGTVLAGLWGAGNGTNTFGENVGAIGVTKIGSRRVIQWA
ALIMVLQGVIGKFGAIFILIPDSVVGGIFCVMFGMIIAFGLSTLQYVDLR
SARNLYILGLSIFFPMVLCRWMQKNPGAIDTGNKTVDSTLSVLLGTTILV
GGVLGCLLDNIIPGTPEERGLIDWANEMPLGDDNVNDGTATDYDFPLGMD
AIRRWKWTYYIPFMPTYKLQKQS*

LD30822.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:20:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG6293-PB 573 CG6293-PB 1..573 1..573 2994 100 Plus
CG6293-PA 573 CG6293-PA 1..573 1..573 2994 100 Plus