BDGP Sequence Production Resources |
Search the DGRC for LD30945
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 309 |
Well: | 45 |
Vector: | pOT2 |
Associated Gene/Transcript | scw-RA |
Protein status: | LD30945.pep: gold |
Preliminary Size: | 1522 |
Sequenced Size: | 1330 |
Gene | Date | Evidence |
---|---|---|
CG31695 | 2001-07-04 | Blastp of sequenced clone |
CG31695 | 2003-01-01 | Sim4 clustering to Release 3 |
scw | 2008-04-29 | Release 5.5 accounting |
scw | 2008-08-15 | Release 5.9 accounting |
scw | 2008-12-18 | 5.12 accounting |
1330 bp (1330 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051793
> LD30945.complete ACAACACAAAATGTTGAATGTGTTTTTTTTAACCAGCCTCTTTTATGCTG CAAGTGCCACCACATATGTGACCACCAATAATCACATCGAGATGCCCATA TACCAGAAGCGTCCTTTGAGCGAGCAAATGGAGATGATTGATATCCTGGA TTTGGGTGACCGTCCGAGACGACAGGCGGAGCCCAATCTCCACAATTCAG CATCGAAATTCCTTCTCGAAGTTTACAACGAGATTAGCGAGGACCAAGAG CCCAAAGAGGTCCTGCATCAGCGCCACAAACGCTCGCTGGACGATGACAT CCTGATTTCCAACGAGGATCGACAGGAGATTGCCAGTTGCAACAGCATCC TTACCTTTTCGAGCCGCTTGAAACCCGAGCAACTGGACAACGAGCTTGAT ATGCACATTACCTTCAACACCAACGATGTGCCAGTGGATTTGAGTTTGGT TCAGGCCATGCTCAGGATATACAAGCAACCAAGTCTGGTGGACAGAAGGG CGAACTTTACCGTGTCCGTGTACCGAAAACTGGACAATCGCCAGGACTTT TCCTATCGCATCCTGGGCTCTGTGAATACTACGAGCAGCCAACGTGGCTG GCTGGAATTCAATTTGACAGATACGCTGCGGTATTGGTTACACAATAAGG GACTGCAACGTCGAAATGAGCTAAGGATATCAATTGGCGATTCCCAGCTG AGCACCTTTGCAGCTGGATTGGTGACACCACAGGCCAGCCGCACCAGTTT AGAGCCCTTTATTGTCGGCTATTTCAACGGCCCCGAGCTGCTGGTCAAAA TACAGAAACTTCGTTTCAAGAGAGATCTCGAGAAGCGAAGGGCCGGTGGT GGTTCGCCACCACCTCCTCCGCCGCCGCCCGTGGATCTGTACAGACCACC GCAGTCCTGCGAGCGCCTTAACTTCACTGTGGATTTCAAGGAGCTGCACA TGCACAACTGGGTGATAGCGCCCAAAAAGTTCGAGGCCTATTTCTGCGGC GGCGGTTGCAACTTCCCGCTGGGCACCAAAATGAATGCCACCAACCACGC CATCGTCCAAACCCTGATGCACCTGAAGCAGCCGCATCTGCCCAAGCCCT GCTGTGTGCCCACAGTTTTGGGTGCCATCACTATTCTGCGGTATCTCAAT GAGGACATCATCGACCTGACCAAATACCAAAAGGCAGTGGCCAAGGAGTG CGGATGTCATTAGATTTAATTGCCTATTTCGTTTGTGATGTACATAGTCA TGGTGTAGTTATAAGTTTAAATAAGATGAATACAACTAAAAGTACTTCTA AAACTGAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
scw-RA | 1409 | scw-RA | 104..1409 | 1..1306 | 6530 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 19698155..19699460 | 1306..1 | 6530 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 19699626..19700932 | 1307..1 | 6535 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 19699626..19700932 | 1307..1 | 6535 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 19698155..19699460 | 1..1306 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scw-RA | 1..1203 | 11..1213 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scw-RA | 1..1203 | 11..1213 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scw-RA | 1..1203 | 11..1213 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scw-RA | 1..1203 | 11..1213 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scw-RA | 1..1203 | 11..1213 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scw-RA | 104..1409 | 1..1306 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scw-RA | 104..1409 | 1..1306 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scw-RA | 37..1342 | 1..1306 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scw-RA | 104..1409 | 1..1306 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scw-RA | 37..1342 | 1..1306 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19699627..19700932 | 1..1306 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19699627..19700932 | 1..1306 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19699627..19700932 | 1..1306 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 19699627..19700932 | 1..1306 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19699627..19700932 | 1..1306 | 100 | Minus |
Translation from 0 to 1212
> LD30945.hyp QHKMLNVFFLTSLFYAASATTYVTTNNHIEMPIYQKRPLSEQMEMIDILD LGDRPRRQAEPNLHNSASKFLLEVYNEISEDQEPKEVLHQRHKRSLDDDI LISNEDRQEIASCNSILTFSSRLKPEQLDNELDMHITFNTNDVPVDLSLV QAMLRIYKQPSLVDRRANFTVSVYRKLDNRQDFSYRILGSVNTTSSQRGW LEFNLTDTLRYWLHNKGLQRRNELRISIGDSQLSTFAAGLVTPQASRTSL EPFIVGYFNGPELLVKIQKLRFKRDLEKRRAGGGSPPPPPPPPVDLYRPP QSCERLNFTVDFKELHMHNWVIAPKKFEAYFCGGGCNFPLGTKMNATNHA IVQTLMHLKQPHLPKPCCVPTVLGAITILRYLNEDIIDLTKYQKAVAKEC GCH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
scw-PB | 400 | CG31695-PB | 1..400 | 4..403 | 2113 | 100 | Plus |
scw-PA | 400 | CG31695-PA | 1..400 | 4..403 | 2113 | 100 | Plus |
gbb-PB | 455 | CG5562-PB | 62..455 | 39..403 | 532 | 33.6 | Plus |
gbb-PA | 455 | CG5562-PA | 62..455 | 39..403 | 532 | 33.6 | Plus |
dpp-PA | 588 | CG9885-PA | 451..587 | 269..402 | 244 | 36.5 | Plus |
Translation from 10 to 1212
> LD30945.pep MLNVFFLTSLFYAASATTYVTTNNHIEMPIYQKRPLSEQMEMIDILDLGD RPRRQAEPNLHNSASKFLLEVYNEISEDQEPKEVLHQRHKRSLDDDILIS NEDRQEIASCNSILTFSSRLKPEQLDNELDMHITFNTNDVPVDLSLVQAM LRIYKQPSLVDRRANFTVSVYRKLDNRQDFSYRILGSVNTTSSQRGWLEF NLTDTLRYWLHNKGLQRRNELRISIGDSQLSTFAAGLVTPQASRTSLEPF IVGYFNGPELLVKIQKLRFKRDLEKRRAGGGSPPPPPPPPVDLYRPPQSC ERLNFTVDFKELHMHNWVIAPKKFEAYFCGGGCNFPLGTKMNATNHAIVQ TLMHLKQPHLPKPCCVPTVLGAITILRYLNEDIIDLTKYQKAVAKECGCH *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19714-PA | 402 | GF19714-PA | 1..402 | 1..400 | 1786 | 84.1 | Plus |
Dana\GF20585-PA | 460 | GF20585-PA | 358..459 | 299..399 | 238 | 39.2 | Plus |
Dana\GF12511-PA | 359 | GF12511-PA | 27..310 | 5..261 | 235 | 29.1 | Plus |
Dana\GF20147-PA | 249 | GF20147-PA | 46..248 | 179..399 | 149 | 26.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21614-PA | 399 | GG21614-PA | 1..399 | 1..400 | 2015 | 95.8 | Plus |
Dere\GG22893-PA | 455 | GG22893-PA | 67..455 | 41..400 | 540 | 34.5 | Plus |
Dere\dpp-PA | 583 | GG24858-PA | 481..582 | 299..399 | 246 | 40.2 | Plus |
Dere\GG16419-PA | 967 | GG16419-PA | 777..966 | 196..399 | 161 | 25.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13052-PA | 360 | GH13052-PA | 1..360 | 42..400 | 1476 | 76.5 | Plus |
Dgri\GH21685-PA | 440 | GH21685-PA | 51..440 | 36..400 | 552 | 35 | Plus |
Dgri\GH10263-PA | 475 | GH10263-PA | 374..474 | 300..399 | 232 | 39.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
scw-PB | 400 | CG31695-PB | 1..400 | 1..400 | 2113 | 100 | Plus |
scw-PA | 400 | CG31695-PA | 1..400 | 1..400 | 2113 | 100 | Plus |
gbb-PB | 455 | CG5562-PB | 62..455 | 36..400 | 532 | 33.6 | Plus |
gbb-PA | 455 | CG5562-PA | 62..455 | 36..400 | 532 | 33.6 | Plus |
dpp-PA | 588 | CG9885-PA | 451..587 | 266..399 | 244 | 36.5 | Plus |
dpp-PE | 588 | CG9885-PE | 451..587 | 266..399 | 244 | 36.5 | Plus |
dpp-PC | 588 | CG9885-PC | 451..587 | 266..399 | 244 | 36.5 | Plus |
dpp-PB | 588 | CG9885-PB | 451..587 | 266..399 | 244 | 36.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18196-PA | 400 | GI18196-PA | 16..400 | 13..400 | 1456 | 71.2 | Plus |
Dmoj\GI18839-PA | 396 | GI18839-PA | 11..396 | 36..400 | 545 | 35.3 | Plus |
Dmoj\GI15572-PA | 451 | GI15572-PA | 348..450 | 298..399 | 246 | 40.8 | Plus |
Dmoj\GI14122-PA | 453 | GI14122-PA | 222..452 | 172..399 | 181 | 27.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25533-PA | 400 | GL25533-PA | 5..400 | 5..400 | 1698 | 81.4 | Plus |
Dper\GL26560-PA | 596 | GL26560-PA | 493..595 | 298..399 | 247 | 39.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16402-PA | 400 | GA16402-PA | 5..400 | 5..400 | 1723 | 82.4 | Plus |
Dpse\GA18973-PA | 459 | GA18973-PA | 66..459 | 36..400 | 553 | 34.5 | Plus |
Dpse\dpp-PA | 584 | GA22099-PA | 481..583 | 298..399 | 246 | 39.8 | Plus |
Dpse\GA10734-PA | 959 | GA10734-PA | 594..958 | 53..399 | 159 | 22.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16994-PA | 400 | GM16994-PA | 1..400 | 1..400 | 2098 | 97.2 | Plus |
Dsec\GM16052-PA | 455 | GM16052-PA | 62..455 | 36..400 | 541 | 33.3 | Plus |
Dsec\GM18343-PA | 583 | GM18343-PA | 489..582 | 299..399 | 239 | 39.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21741-PA | 400 | GD21741-PA | 1..400 | 1..400 | 2099 | 97.2 | Plus |
Dsim\GD11802-PA | 455 | GD11802-PA | 62..455 | 36..400 | 541 | 33.3 | Plus |
Dsim\dpp-PA | 455 | GD23157-PA | 353..454 | 299..399 | 245 | 40.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14689-PA | 410 | GJ14689-PA | 18..410 | 16..400 | 1488 | 71.8 | Plus |
Dvir\gbb-PA | 396 | GJ21867-PA | 16..396 | 41..400 | 514 | 34.2 | Plus |
Dvir\dpp-PA | 503 | GJ17292-PA | 401..502 | 299..399 | 247 | 41.2 | Plus |
Dvir\GJ20145-PA | 926 | GJ20145-PA | 586..925 | 80..399 | 155 | 22.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19051-PA | 395 | GK19051-PA | 14..395 | 14..400 | 1521 | 74.4 | Plus |
Dwil\GK15709-PA | 457 | GK15709-PA | 59..457 | 36..400 | 515 | 34 | Plus |
Dwil\GK23940-PA | 603 | GK23940-PA | 501..602 | 299..399 | 245 | 41.2 | Plus |
Dwil\GK13706-PA | 901 | GK13706-PA | 692..900 | 178..399 | 155 | 25.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12636-PA | 399 | GE12636-PA | 1..399 | 1..400 | 1989 | 94.8 | Plus |
Dyak\GE14331-PA | 456 | GE14331-PA | 62..456 | 36..400 | 539 | 34.2 | Plus |
Dyak\dpp-PA | 450 | GE18157-PA | 348..449 | 299..399 | 244 | 40.2 | Plus |