Clone LD30945 Report

Search the DGRC for LD30945

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:309
Well:45
Vector:pOT2
Associated Gene/Transcriptscw-RA
Protein status:LD30945.pep: gold
Preliminary Size:1522
Sequenced Size:1330

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31695 2001-07-04 Blastp of sequenced clone
CG31695 2003-01-01 Sim4 clustering to Release 3
scw 2008-04-29 Release 5.5 accounting
scw 2008-08-15 Release 5.9 accounting
scw 2008-12-18 5.12 accounting

Clone Sequence Records

LD30945.complete Sequence

1330 bp (1330 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051793

> LD30945.complete
ACAACACAAAATGTTGAATGTGTTTTTTTTAACCAGCCTCTTTTATGCTG
CAAGTGCCACCACATATGTGACCACCAATAATCACATCGAGATGCCCATA
TACCAGAAGCGTCCTTTGAGCGAGCAAATGGAGATGATTGATATCCTGGA
TTTGGGTGACCGTCCGAGACGACAGGCGGAGCCCAATCTCCACAATTCAG
CATCGAAATTCCTTCTCGAAGTTTACAACGAGATTAGCGAGGACCAAGAG
CCCAAAGAGGTCCTGCATCAGCGCCACAAACGCTCGCTGGACGATGACAT
CCTGATTTCCAACGAGGATCGACAGGAGATTGCCAGTTGCAACAGCATCC
TTACCTTTTCGAGCCGCTTGAAACCCGAGCAACTGGACAACGAGCTTGAT
ATGCACATTACCTTCAACACCAACGATGTGCCAGTGGATTTGAGTTTGGT
TCAGGCCATGCTCAGGATATACAAGCAACCAAGTCTGGTGGACAGAAGGG
CGAACTTTACCGTGTCCGTGTACCGAAAACTGGACAATCGCCAGGACTTT
TCCTATCGCATCCTGGGCTCTGTGAATACTACGAGCAGCCAACGTGGCTG
GCTGGAATTCAATTTGACAGATACGCTGCGGTATTGGTTACACAATAAGG
GACTGCAACGTCGAAATGAGCTAAGGATATCAATTGGCGATTCCCAGCTG
AGCACCTTTGCAGCTGGATTGGTGACACCACAGGCCAGCCGCACCAGTTT
AGAGCCCTTTATTGTCGGCTATTTCAACGGCCCCGAGCTGCTGGTCAAAA
TACAGAAACTTCGTTTCAAGAGAGATCTCGAGAAGCGAAGGGCCGGTGGT
GGTTCGCCACCACCTCCTCCGCCGCCGCCCGTGGATCTGTACAGACCACC
GCAGTCCTGCGAGCGCCTTAACTTCACTGTGGATTTCAAGGAGCTGCACA
TGCACAACTGGGTGATAGCGCCCAAAAAGTTCGAGGCCTATTTCTGCGGC
GGCGGTTGCAACTTCCCGCTGGGCACCAAAATGAATGCCACCAACCACGC
CATCGTCCAAACCCTGATGCACCTGAAGCAGCCGCATCTGCCCAAGCCCT
GCTGTGTGCCCACAGTTTTGGGTGCCATCACTATTCTGCGGTATCTCAAT
GAGGACATCATCGACCTGACCAAATACCAAAAGGCAGTGGCCAAGGAGTG
CGGATGTCATTAGATTTAATTGCCTATTTCGTTTGTGATGTACATAGTCA
TGGTGTAGTTATAAGTTTAAATAAGATGAATACAACTAAAAGTACTTCTA
AAACTGAAAAAAAAAAAAAAAAAAAAAAAA

LD30945.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
scw-RA 1409 scw-RA 104..1409 1..1306 6530 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19698155..19699460 1306..1 6530 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:24:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19699626..19700932 1307..1 6535 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19699626..19700932 1307..1 6535 100 Minus
Blast to na_te.dros performed on 2019-03-15 16:01:34 has no hits.

LD30945.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:02:48 Download gff for LD30945.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19698155..19699460 1..1306 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:12:02 Download gff for LD30945.complete
Subject Subject Range Query Range Percent Splice Strand
scw-RA 1..1203 11..1213 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:19:37 Download gff for LD30945.complete
Subject Subject Range Query Range Percent Splice Strand
scw-RA 1..1203 11..1213 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:49:12 Download gff for LD30945.complete
Subject Subject Range Query Range Percent Splice Strand
scw-RA 1..1203 11..1213 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:51:12 Download gff for LD30945.complete
Subject Subject Range Query Range Percent Splice Strand
scw-RA 1..1203 11..1213 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:23:41 Download gff for LD30945.complete
Subject Subject Range Query Range Percent Splice Strand
scw-RA 1..1203 11..1213 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:15:38 Download gff for LD30945.complete
Subject Subject Range Query Range Percent Splice Strand
scw-RA 104..1409 1..1306 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:19:37 Download gff for LD30945.complete
Subject Subject Range Query Range Percent Splice Strand
scw-RA 104..1409 1..1306 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:49:12 Download gff for LD30945.complete
Subject Subject Range Query Range Percent Splice Strand
scw-RA 37..1342 1..1306 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:51:12 Download gff for LD30945.complete
Subject Subject Range Query Range Percent Splice Strand
scw-RA 104..1409 1..1306 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:23:41 Download gff for LD30945.complete
Subject Subject Range Query Range Percent Splice Strand
scw-RA 37..1342 1..1306 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:02:48 Download gff for LD30945.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19699627..19700932 1..1306 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:02:48 Download gff for LD30945.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19699627..19700932 1..1306 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:02:48 Download gff for LD30945.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19699627..19700932 1..1306 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:49:12 Download gff for LD30945.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19699627..19700932 1..1306 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:29:38 Download gff for LD30945.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19699627..19700932 1..1306 100   Minus

LD30945.hyp Sequence

Translation from 0 to 1212

> LD30945.hyp
QHKMLNVFFLTSLFYAASATTYVTTNNHIEMPIYQKRPLSEQMEMIDILD
LGDRPRRQAEPNLHNSASKFLLEVYNEISEDQEPKEVLHQRHKRSLDDDI
LISNEDRQEIASCNSILTFSSRLKPEQLDNELDMHITFNTNDVPVDLSLV
QAMLRIYKQPSLVDRRANFTVSVYRKLDNRQDFSYRILGSVNTTSSQRGW
LEFNLTDTLRYWLHNKGLQRRNELRISIGDSQLSTFAAGLVTPQASRTSL
EPFIVGYFNGPELLVKIQKLRFKRDLEKRRAGGGSPPPPPPPPVDLYRPP
QSCERLNFTVDFKELHMHNWVIAPKKFEAYFCGGGCNFPLGTKMNATNHA
IVQTLMHLKQPHLPKPCCVPTVLGAITILRYLNEDIIDLTKYQKAVAKEC
GCH*

LD30945.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
scw-PB 400 CG31695-PB 1..400 4..403 2113 100 Plus
scw-PA 400 CG31695-PA 1..400 4..403 2113 100 Plus
gbb-PB 455 CG5562-PB 62..455 39..403 532 33.6 Plus
gbb-PA 455 CG5562-PA 62..455 39..403 532 33.6 Plus
dpp-PA 588 CG9885-PA 451..587 269..402 244 36.5 Plus

LD30945.pep Sequence

Translation from 10 to 1212

> LD30945.pep
MLNVFFLTSLFYAASATTYVTTNNHIEMPIYQKRPLSEQMEMIDILDLGD
RPRRQAEPNLHNSASKFLLEVYNEISEDQEPKEVLHQRHKRSLDDDILIS
NEDRQEIASCNSILTFSSRLKPEQLDNELDMHITFNTNDVPVDLSLVQAM
LRIYKQPSLVDRRANFTVSVYRKLDNRQDFSYRILGSVNTTSSQRGWLEF
NLTDTLRYWLHNKGLQRRNELRISIGDSQLSTFAAGLVTPQASRTSLEPF
IVGYFNGPELLVKIQKLRFKRDLEKRRAGGGSPPPPPPPPVDLYRPPQSC
ERLNFTVDFKELHMHNWVIAPKKFEAYFCGGGCNFPLGTKMNATNHAIVQ
TLMHLKQPHLPKPCCVPTVLGAITILRYLNEDIIDLTKYQKAVAKECGCH
*

LD30945.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:13:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19714-PA 402 GF19714-PA 1..402 1..400 1786 84.1 Plus
Dana\GF20585-PA 460 GF20585-PA 358..459 299..399 238 39.2 Plus
Dana\GF12511-PA 359 GF12511-PA 27..310 5..261 235 29.1 Plus
Dana\GF20147-PA 249 GF20147-PA 46..248 179..399 149 26.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:13:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21614-PA 399 GG21614-PA 1..399 1..400 2015 95.8 Plus
Dere\GG22893-PA 455 GG22893-PA 67..455 41..400 540 34.5 Plus
Dere\dpp-PA 583 GG24858-PA 481..582 299..399 246 40.2 Plus
Dere\GG16419-PA 967 GG16419-PA 777..966 196..399 161 25.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13052-PA 360 GH13052-PA 1..360 42..400 1476 76.5 Plus
Dgri\GH21685-PA 440 GH21685-PA 51..440 36..400 552 35 Plus
Dgri\GH10263-PA 475 GH10263-PA 374..474 300..399 232 39.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
scw-PB 400 CG31695-PB 1..400 1..400 2113 100 Plus
scw-PA 400 CG31695-PA 1..400 1..400 2113 100 Plus
gbb-PB 455 CG5562-PB 62..455 36..400 532 33.6 Plus
gbb-PA 455 CG5562-PA 62..455 36..400 532 33.6 Plus
dpp-PA 588 CG9885-PA 451..587 266..399 244 36.5 Plus
dpp-PE 588 CG9885-PE 451..587 266..399 244 36.5 Plus
dpp-PC 588 CG9885-PC 451..587 266..399 244 36.5 Plus
dpp-PB 588 CG9885-PB 451..587 266..399 244 36.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18196-PA 400 GI18196-PA 16..400 13..400 1456 71.2 Plus
Dmoj\GI18839-PA 396 GI18839-PA 11..396 36..400 545 35.3 Plus
Dmoj\GI15572-PA 451 GI15572-PA 348..450 298..399 246 40.8 Plus
Dmoj\GI14122-PA 453 GI14122-PA 222..452 172..399 181 27.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:13:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25533-PA 400 GL25533-PA 5..400 5..400 1698 81.4 Plus
Dper\GL26560-PA 596 GL26560-PA 493..595 298..399 247 39.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16402-PA 400 GA16402-PA 5..400 5..400 1723 82.4 Plus
Dpse\GA18973-PA 459 GA18973-PA 66..459 36..400 553 34.5 Plus
Dpse\dpp-PA 584 GA22099-PA 481..583 298..399 246 39.8 Plus
Dpse\GA10734-PA 959 GA10734-PA 594..958 53..399 159 22.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16994-PA 400 GM16994-PA 1..400 1..400 2098 97.2 Plus
Dsec\GM16052-PA 455 GM16052-PA 62..455 36..400 541 33.3 Plus
Dsec\GM18343-PA 583 GM18343-PA 489..582 299..399 239 39.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21741-PA 400 GD21741-PA 1..400 1..400 2099 97.2 Plus
Dsim\GD11802-PA 455 GD11802-PA 62..455 36..400 541 33.3 Plus
Dsim\dpp-PA 455 GD23157-PA 353..454 299..399 245 40.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:13:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14689-PA 410 GJ14689-PA 18..410 16..400 1488 71.8 Plus
Dvir\gbb-PA 396 GJ21867-PA 16..396 41..400 514 34.2 Plus
Dvir\dpp-PA 503 GJ17292-PA 401..502 299..399 247 41.2 Plus
Dvir\GJ20145-PA 926 GJ20145-PA 586..925 80..399 155 22.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:13:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19051-PA 395 GK19051-PA 14..395 14..400 1521 74.4 Plus
Dwil\GK15709-PA 457 GK15709-PA 59..457 36..400 515 34 Plus
Dwil\GK23940-PA 603 GK23940-PA 501..602 299..399 245 41.2 Plus
Dwil\GK13706-PA 901 GK13706-PA 692..900 178..399 155 25.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:14:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12636-PA 399 GE12636-PA 1..399 1..400 1989 94.8 Plus
Dyak\GE14331-PA 456 GE14331-PA 62..456 36..400 539 34.2 Plus
Dyak\dpp-PA 450 GE18157-PA 348..449 299..399 244 40.2 Plus