Clone LD31046 Report

Search the DGRC for LD31046

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:310
Well:46
Vector:pOT2
Associated Gene/TranscriptSKIP-RB
Protein status:LD31046.pep: gold
Preliminary Size:4448
Sequenced Size:5101

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31163 2001-12-12 Blastp of sequenced clone
CG31163 2003-01-01 Sim4 clustering to Release 3
CG31163 2008-04-29 Release 5.5 accounting
CG31163 2008-08-15 Release 5.9 accounting
CG31163 2008-12-18 5.12 accounting

Clone Sequence Records

LD31046.complete Sequence

5101 bp (5101 high quality bases) assembled on 2001-12-12

GenBank Submission: AY070555

> LD31046.complete
ATCCGGTCGTTTTGAAAACCAGCTCGAGCGGTCTATTCGCGTGAAATTGA
AACTGAAAAAGCCGGTAAAACTGAAGCAAGTGTGTTGTGATTGAGAATTG
AGCGAAACGAAAACGGTGGCCAAACGAGCCGTTTAATAAGCAAACAGGCT
GGCCAATAACCAATTACCATCAGCCATGCCATCAAGGAATCGTGATAACG
CAGACACAACCGGCAGCAATTTGTTAATTTGAAACGTCGTGTGTGTTCCT
CTACGAAAAAAAAAACCCAGTTATTTAGCAAGCATTTAAATTGCATTTGT
AGCATAGCACTTTAGTTGCGCGTAGGAGGAACAGCAAGGTCGTTGGGGTC
GAATGTGAATGTTTGTGATGCAAGTGACAAAATCAAAATTGGAGTAAATT
GGTAGCCATTCCTGTGAGCATTTTCGCGTCGCGTAACGGTAAATCATTGC
GCCCTGCGTGTCTTCGTGTGCGTGCGTGTTTGAGTGTACGTTTTTCGGTT
TTGTTTTCATCTCCTCCTTGCCATCCTCCTTTCTTCCACCTTCAATTGCC
ATCTCCTAATTTCCTCTACGAACGGAGAAACACGAAAACGAAAAGTTTCG
AAGACCAAAATATTGATGAACTATATTTTTGTACTTGACAAATTTTGAAT
TCAAAACAGACACTAGCGCACAAAAGAACCTGTCATTTAGAACATAAGAG
GAGCAATGCGGCGAAGCGGTGGCGCCAAACAAAATGTGAGGATAAACCAG
CGTTGGAGCCTTCTGGGATTATGCTAAAAATGCTCAAAGTGCAATATAAA
TTTTTATGAGTGTACGCGCTGAATTTTTACGACTGTCTGGGGGCGGGGAA
AATAAATTAGAGAAAATGCCACAGGGAGGACGATTTAAAACAATACAATA
GCTTAAAGTGGCAAACGGAAATTGCATGCAACCAGGAGGCGTGGCACTGT
ACGCCCCCCGAGCACGTGACGCGCACACCAAGCCAACAGCGAAACTAATA
TAAGCCATTTTGTAGCGCTAATTCGCAGGACACACGTAAACGCAGCACAG
CTACGTCTTACGTAAAAACACCACCCATCTGACACTTGGAAATCAAGCAG
AAACCATACACTCACCTCATCATCATCATCATCAACATGGCCGTTAGCAA
TATTGTCTGCGAGTGGCTAAGAGCTTTGGGCCTGGCCCAATACGCCGAGA
GCTTCCTGGACAATGGCTACGACGACCTGGAGATCTGTAAACAGGTCGGT
GATCCCGATCTAGATGCCATCGGCGTCGAGAATCCTGCCCATAGACACAA
GCTGCTCAAGAGCATCCGATCGCTGAGGGAAAAGGGCGCCGCATCCGTTT
ACTTTATGCTCAACGATCCCAACTCGCTCTCGGGCAGCATGGAGATCCTC
TGCGAAACACCACCCAACAACGAACTGGAGCTCGTCCTGCGGGAGCAGCT
AGAGACGGACGGAGTCCGGCTGACCGCGCATCCATACTCAACACCGCCCT
CGAGTTGTCTGTCCGACAAGGAGGAGGATGAGATTTACGGATTCGGCTAT
GGCGTCTTCGCACCCCGCGTGGCCAGAGGAGGGTTAACACAACAGCAACA
GCTGCTGCAGCAGCAGACGCTGCAAACGCAACAGAGCATACAGCAACAGC
AGCAGCAGATGCAACAGCAGCAGCAACAGTTACCAATTGTGCCAGGACAA
CAGCAGCAAGGACCTCATCAGCATCAGACCCTGCCACCGAATGTCGCGCA
TTTGAACTTTGTGCAGCAAAACTGCCTGAGTCCGCGCTCAGCTTATTTCT
ACGAATTTCCACCGACAGCTGAGGGCCGCGAGACAAAGAAACGCACCACA
CTGGCCCGGCTGCTGAAAGGCTTGAAGACTGTCAATCGACGGGATCGGAA
CAATCAACAGAATGGCGCCCAGGCCAGGGCGGCTAACGATCGTCTGCGGC
ACTTTCAAATGATAAACGGCGGCGCCGGCGGACAGCAGCACAGTTTCGAG
GAGACAATCCACAGGTTGAAAGTACAAGAGGCCATGCGGAAAAAGGAAAA
ATTTCAACGTGAACACGAGGAGATCCTGCGTGATATTCGACAGGGACTGT
TGCAAATGAGTCGCGGCGAAGGACGCATGGACGATACGTATATGTACGAC
GAGGCGCTGAGAACGGGTGGCGGTATGGGCATCGCCGGACTGGGCATGCC
ACTCGGTGTGGGCGGCAATGGTGGCGGCGGGGGAGCAGCCCATTATGCGG
TGAGTGCGCTGCATCATCAAGGTCATTGGTACGACGAGCCGCCCTACGAA
AGCGATCCCGATGACTTTCTTATGGCCGGGCTCAACTGCGGACCAGCTGC
CACAATTCAGGGTGGCCGTGTGCGCTTCTCGAACAACCGCGAGAGCACAG
GCGTAATTTCATTAAGATCCGCCGGAGATATTTCATTGCCGCAACGTGGA
CCGCCGCGTAGAGGTCTTATCGTGCCGCAGCAGCCGCCAAATCCACCGAC
AATAATACCCTTAACGCACGCCAGATCTCATGATCGCGAAAGCGGCGACT
ACGCGGGCTCCATCTCAGATCTACAAAGCGTTACCTCCAGATTCAGTACG
GTGTCGATTGGCACCAACAACTGCACGGCCCGCTATCGAACCCTAAGCGG
TGGAATTGGGGAATCACCATCGCTGTCGCCCAGTCCATCGTCGGATTACG
AGGACATCGGAGTGACCAGGGGCCACGGATGTCTACCGCCCAGCCTGCTG
GCCGCTAAGGCCAAAAAGAACGGACTGCCGCACGGCAAGGCGAACACCAT
TTGCCAAAAGGCCACGGTGCATCATTCGGGCGAGATGCGTAGCTCGGCAA
AGGAAATTGGCGCATTTAATGAGAATGGACGAAACTTTGTTGCCACAAAG
GATACGTCGAGGGATTTCAGCAATTCCCAAGATAATACCGACCGTGGCAG
CATGAGCGATCAGGCGTTCGCCTGTTCGGCCAGCTCCGTGGAAAGTTTGC
CCAGCGCATCCGGTTCGAGCACCCAGGCTCTGGTTCGTCCTGGCAGTCCG
CACAGCTCGATTTCGGCCGAGGATCGCACCTCGATGGCCAGCTGCATCTG
CAAGGCCAAGGCTCTCGTGGATAGTTTGCCCAATCCCTACGATAAGGAGG
CACTCAAATTCAAGAAGGGCGACCTTATCGATGTGCTGTCGATGAACGCC
TCGGGCATTTGGAAGGGTCGATGCCACGGCCGCGTGGGCCACTTCAAGTT
CATCAACGTGGAGGTGCTGCCGGAGCAGCGAATGAAGAACTCCAGCAGCA
AGACCCTGGCCGCCGGCTCGCGTTTGGCTAATTCTGGAAATGGCAGCCAC
AATGGTGGACCCTGCTCCGTGGAGGACCTGCTAATTCGCATTGGACTCAA
GGAGTACACCTCCGTCTTTGTGCTCAACGGCTACGAGGACCTGGAACTGT
TCAAGGAACTGGAGCCCGCTGACCTGGATTACCTGGGCATTCTCAACCAG
GAACATCGTGCCAAGCTGCTGACGGCTGTGCAACTGCTGCATGACATTGA
ATGCTCCGATGTGGATATACCCGGATCCAGCTCGGAAAATGATGAAGCCC
GCCTGAACAACATCAATATGAAGCATGGAGCATCGCCCTTTGGTCGACGC
CACTTTCCCCGCGACTCTGGATGCTACGAGGGATCCCCGCTACCCAGCTC
ACAGACACCTACCCAGGCGGTAAACTCGACGGACGAGTCGAACAGCTTGG
ACGACGTGGTGACCAAGTGTTCCAGTGAAATTATGAAGCGCGTGGAGAGC
GCCCGCCGTTGCAAGGACAATCCGTTCAAAACCACTCTGCCCGGCGGAGG
ACGACTGGGCAAGAAGTCCTTTCTCGGCGGCAACGGCCTTATGGCGGACG
ATACGCTCACGCGTGGAGGGCTTAGCGAGAAGTCGAGCGATTCGGGGGTC
AGCAGCAGTTCGCTATCGTCGGGTCCGCTGAAGAGCAGCACTTAACATTT
GCCCACCATACTGGCCCACGAGTTGCTGCTGGGCGTGGGCTCGGGCATGG
GCATGGGTCTTGGTCTTGGCACCATGAGTCATGGCACCACAGGTACCCTG
ACGCCCCACGGAGTGGCCACTGCCACCTCGCCTACCGCCCATTCGGCACC
GCTGGGTAACATCTGCAACACGCTGCCACATGCACCAAGCTCCTCAGGCG
GCGGCGGCGTATCTTCCTCCATGGCCAGCAACCTGCCACTCAACCGGAAT
CTGGTAATGCTGCGCAATCATCTGCGCAAGAATACGGGCGGTAGCATTAC
CGGAAATGGCGGCGTAGGAGCTTCCGGTGTTGGAGCACAGCTGCTGCAGG
ATCAGGACGACAGACTGGAGGATCAATAACCCATTTACTACATCAAATTC
TTAGTTTAGTCTCCCATTGAGTTAAGTGTATTTCAATTGCTGTGATTCGA
TAGTGAAAACAAAAGGCCAACATGCGTCTTTCAGTTCAAATGTATAGTAT
GTATAGAGAGAGATAGACAGACAGTTAAGAGAGAGACCGGTATAGTGGGG
GATGTGTTTAAAGGAAAGAGAAAGATAGCAAGCAGAGATAGTAAGAGTCA
GTCAATCCTTCCTCCGATAATGTTGGCATTTACACAAATATTTAACACTT
ATATAAATACAGACTTTACAGACTTATATATACATACACAATCTGCAGAA
AAGGAGAAATTTTATATACTTAGTGATGTAATGAAAATATTTATATATTT
TGACTATATTTTGATTTTTAGTTAGTTTGAAGCTATGCATTGAATGAGAC
TTGTATGATTTGCCATTTTATTACTGTTTAATTGCTTTGTGTATGCATAT
TTCTCAACGTGATATTGTCAAACGTCCAACTTGAATTGCATTTTAAATAG
ATTCATTTCTAACATTTTAATAAGAGACACACATAGAAGTTGATTCCTAT
TTTAAGGCACTAATCTGAGTGCAAGCAATAGACCAATTCAATTTTAGCAA
CCAAGCAAAACAAAATATTTATAAACAAAAAAAAAAAAAAAACCAAAAAA
AAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A

LD31046.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
SKIP.e 6497 SKIP.e 1890..5433 1495..5038 17690 99.9 Plus
SKIP-RE 6196 SKIP-RE 1890..5433 1495..5038 17690 99.9 Plus
SKIP.b 6152 SKIP.b 1890..5433 1495..5038 17690 99.9 Plus
SKIP.e 6497 SKIP.e 60..1555 1..1496 7480 100 Plus
SKIP-RE 6196 SKIP-RE 60..1555 1..1496 7480 100 Plus
SKIP.b 6152 SKIP.b 60..1555 1..1496 7480 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18117117..18118594 3553..5038 7245 99.3 Plus
chr3R 27901430 chr3R 17997606..17998394 699..1496 3820 98.9 Plus
chr3R 27901430 chr3R 17957580..17958175 1..596 2965 99.8 Plus
chr3R 27901430 chr3R 18101985..18102257 1496..1768 1365 100 Plus
chr3R 27901430 chr3R 18116266..18116533 3163..3430 1340 100 Plus
chr3R 27901430 chr3R 18109119..18109350 2130..2361 1130 99.1 Plus
chr3R 27901430 chr3R 18113732..18113951 2606..2825 1085 99.5 Plus
chr3R 27901430 chr3R 18114817..18115010 2826..3019 970 100 Plus
chr3R 27901430 chr3R 18111436..18111602 2358..2524 835 100 Plus
chr3R 27901430 chr3R 18115968..18116113 3019..3164 730 100 Plus
chr3R 27901430 chr3R 18116607..18116730 3430..3553 590 98.4 Plus
chr3R 27901430 chr3R 18102862..18102970 1821..1929 530 99.1 Plus
chr3R 27901430 chr3R 18104436..18104527 1928..2019 430 97.8 Plus
chr3R 27901430 chr3R 18113132..18113216 2522..2606 410 98.8 Plus
chr3R 27901430 chr3R 18108524..18108583 2071..2130 300 100 Plus
chr3R 27901430 chr3R 18105484..18105541 2015..2072 290 100 Plus
chr3R 27901430 chr3R 17973067..17973123 645..701 285 100 Plus
chr3R 27901430 chr3R 18142175..18142312 1285..1148 285 80.4 Minus
chr3R 27901430 chr3R 17965889..17965938 595..644 250 100 Plus
chr3R 27901430 chr3R 18102340..18102389 1772..1821 250 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:24:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22293459..22294944 3553..5038 7400 99.9 Plus
3R 32079331 3R 22173930..22174727 699..1496 3990 100 Plus
3R 32079331 3R 22133858..22134453 1..596 2980 100 Plus
3R 32079331 3R 22278351..22278626 1496..1771 1380 100 Plus
3R 32079331 3R 22292611..22292878 3163..3430 1340 100 Plus
3R 32079331 3R 22285471..22285702 2130..2361 1160 100 Plus
3R 32079331 3R 22290077..22290296 2606..2825 1100 100 Plus
3R 32079331 3R 22291162..22291355 2826..3019 970 100 Plus
3R 32079331 3R 22287794..22287960 2358..2524 835 100 Plus
3R 32079331 3R 22292313..22292458 3019..3164 730 100 Plus
3R 32079331 3R 22292949..22293072 3430..3553 620 100 Plus
3R 32079331 3R 22279228..22279336 1821..1929 545 100 Plus
3R 32079331 3R 22280798..22280889 1928..2019 445 98.9 Plus
3R 32079331 3R 22289477..22289561 2522..2606 425 100 Plus
3R 32079331 3R 22284876..22284935 2071..2130 300 100 Plus
3R 32079331 3R 22281846..22281903 2015..2072 290 100 Plus
3R 32079331 3R 22149367..22149423 645..701 285 100 Plus
3R 32079331 3R 22318569..22318706 1285..1148 285 80.4 Minus
3R 32079331 3R 22142174..22142223 595..644 250 100 Plus
3R 32079331 3R 22278706..22278755 1772..1821 250 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22034290..22035775 3553..5038 7400 99.8 Plus
3R 31820162 3R 21914761..21915558 699..1496 3990 100 Plus
3R 31820162 3R 21874689..21875284 1..596 2980 100 Plus
3R 31820162 3R 22019182..22019457 1496..1771 1380 100 Plus
3R 31820162 3R 22033442..22033709 3163..3430 1340 100 Plus
3R 31820162 3R 22026302..22026533 2130..2361 1160 100 Plus
3R 31820162 3R 22030908..22031127 2606..2825 1100 100 Plus
3R 31820162 3R 22031993..22032186 2826..3019 970 100 Plus
3R 31820162 3R 22028625..22028791 2358..2524 835 100 Plus
3R 31820162 3R 22033144..22033289 3019..3164 730 100 Plus
3R 31820162 3R 22033780..22033903 3430..3553 620 100 Plus
3R 31820162 3R 22020059..22020167 1821..1929 545 100 Plus
3R 31820162 3R 22021629..22021720 1928..2019 445 98.9 Plus
3R 31820162 3R 22030308..22030392 2522..2606 425 100 Plus
3R 31820162 3R 22025707..22025766 2071..2130 300 100 Plus
3R 31820162 3R 22022677..22022734 2015..2072 290 100 Plus
3R 31820162 3R 21890198..21890254 645..701 285 100 Plus
3R 31820162 3R 22059400..22059537 1285..1148 285 80.4 Minus
3R 31820162 3R 22019537..22019586 1772..1821 250 100 Plus
3R 31820162 3R 21883005..21883054 595..644 250 100 Plus
Blast to na_te.dros performed 2019-03-16 11:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 1277..1491 4840..5043 130 56.9 Plus
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 1823..1895 4970..5040 126 65.8 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 6795..6944 4633..4773 125 58 Plus

LD31046.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:04:35 Download gff for LD31046.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18116608..18116729 3431..3552 98 -> Plus
chr3R 18111439..18111602 2361..2524 100 -> Plus
chr3R 18113135..18113216 2525..2606 98 -> Plus
chr3R 18114817..18115009 2826..3018 100 -> Plus
chr3R 18115968..18116113 3019..3164 100 -> Plus
chr3R 18116268..18116533 3165..3430 100 -> Plus
chr3R 18113733..18113951 2607..2825 99 -> Plus
chr3R 17957580..17958173 1..594 99 -> Plus
chr3R 17965889..17965938 595..644 100 -> Plus
chr3R 17973067..17973122 645..700 100 -> Plus
chr3R 17997608..17998394 701..1496 98 -> Plus
chr3R 18101986..18102078 1497..1589 100 == Plus
chr3R 18102169..18102260 1680..1771 98 -> Plus
chr3R 18102340..18102389 1772..1821 100 -> Plus
chr3R 18102863..18102969 1822..1928 99 -> Plus
chr3R 18104437..18104523 1929..2015 98 -> Plus
chr3R 18105485..18105541 2016..2072 100 -> Plus
chr3R 18108526..18108583 2073..2130 100 -> Plus
chr3R 18109120..18109349 2131..2360 99 -> Plus
chr3R 18117117..18118576 3553..5020 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:35:27 Download gff for LD31046.complete
Subject Subject Range Query Range Percent Splice Strand
CG31163-RB 1..2859 1137..3995 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:56:22 Download gff for LD31046.complete
Subject Subject Range Query Range Percent Splice Strand
SKIP-RB 1..2859 1137..3995 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:26:26 Download gff for LD31046.complete
Subject Subject Range Query Range Percent Splice Strand
SKIP-RI 1..3243 1137..4379 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:38:59 Download gff for LD31046.complete
Subject Subject Range Query Range Percent Splice Strand
CG31163-RB 1..2859 1137..3995 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:24:12 Download gff for LD31046.complete
Subject Subject Range Query Range Percent Splice Strand
SKIP-RI 1..3243 1137..4379 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:35:26 Download gff for LD31046.complete
Subject Subject Range Query Range Percent Splice Strand
CG31163-RB 1..5020 1..5020 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:56:22 Download gff for LD31046.complete
Subject Subject Range Query Range Percent Splice Strand
SKIP-RB 24..5043 1..5020 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:26:26 Download gff for LD31046.complete
Subject Subject Range Query Range Percent Splice Strand
SKIP-RB 24..5043 1..5020 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:39:00 Download gff for LD31046.complete
Subject Subject Range Query Range Percent Splice Strand
CG31163-RB 1..5020 1..5020 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:24:12 Download gff for LD31046.complete
Subject Subject Range Query Range Percent Splice Strand
SKIP-RB 24..5043 1..5020 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:04:35 Download gff for LD31046.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22292950..22293071 3431..3552 100 -> Plus
3R 22133858..22134451 1..594 100 -> Plus
3R 22142174..22142223 595..644 100 -> Plus
3R 22149367..22149422 645..700 100 -> Plus
3R 22173932..22174727 701..1496 100 -> Plus
3R 22278352..22278626 1497..1771 100 -> Plus
3R 22278706..22278755 1772..1821 100 -> Plus
3R 22279229..22279335 1822..1928 100 -> Plus
3R 22280799..22280885 1929..2015 100 -> Plus
3R 22281847..22281903 2016..2072 100 -> Plus
3R 22284878..22284935 2073..2130 100 -> Plus
3R 22285472..22285701 2131..2360 100 -> Plus
3R 22287797..22287960 2361..2524 100 -> Plus
3R 22289480..22289561 2525..2606 100 -> Plus
3R 22290078..22290296 2607..2825 100 -> Plus
3R 22291162..22291354 2826..3018 100 -> Plus
3R 22292313..22292458 3019..3164 100 -> Plus
3R 22292613..22292878 3165..3430 100 -> Plus
3R 22293459..22294926 3553..5020 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:04:35 Download gff for LD31046.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22292950..22293071 3431..3552 100 -> Plus
3R 22133858..22134451 1..594 100 -> Plus
3R 22142174..22142223 595..644 100 -> Plus
3R 22149367..22149422 645..700 100 -> Plus
3R 22173932..22174727 701..1496 100 -> Plus
3R 22278352..22278626 1497..1771 100 -> Plus
3R 22278706..22278755 1772..1821 100 -> Plus
3R 22279229..22279335 1822..1928 100 -> Plus
3R 22280799..22280885 1929..2015 100 -> Plus
3R 22281847..22281903 2016..2072 100 -> Plus
3R 22284878..22284935 2073..2130 100 -> Plus
3R 22285472..22285701 2131..2360 100 -> Plus
3R 22287797..22287960 2361..2524 100 -> Plus
3R 22289480..22289561 2525..2606 100 -> Plus
3R 22290078..22290296 2607..2825 100 -> Plus
3R 22291162..22291354 2826..3018 100 -> Plus
3R 22292313..22292458 3019..3164 100 -> Plus
3R 22292613..22292878 3165..3430 100 -> Plus
3R 22293459..22294926 3553..5020 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:04:35 Download gff for LD31046.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22292950..22293071 3431..3552 100 -> Plus
3R 22133858..22134451 1..594 100 -> Plus
3R 22142174..22142223 595..644 100 -> Plus
3R 22149367..22149422 645..700 100 -> Plus
3R 22173932..22174727 701..1496 100 -> Plus
3R 22278352..22278626 1497..1771 100 -> Plus
3R 22278706..22278755 1772..1821 100 -> Plus
3R 22279229..22279335 1822..1928 100 -> Plus
3R 22280799..22280885 1929..2015 100 -> Plus
3R 22281847..22281903 2016..2072 100 -> Plus
3R 22284878..22284935 2073..2130 100 -> Plus
3R 22285472..22285701 2131..2360 100 -> Plus
3R 22287797..22287960 2361..2524 100 -> Plus
3R 22289480..22289561 2525..2606 100 -> Plus
3R 22290078..22290296 2607..2825 100 -> Plus
3R 22291162..22291354 2826..3018 100 -> Plus
3R 22292313..22292458 3019..3164 100 -> Plus
3R 22292613..22292878 3165..3430 100 -> Plus
3R 22293459..22294926 3553..5020 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:26:26 Download gff for LD31046.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18118035..18118180 3019..3164 100 -> Plus
arm_3R 18115800..18116018 2607..2825 100 -> Plus
arm_3R 18116884..18117076 2826..3018 100 -> Plus
arm_3R 18118335..18118600 3165..3430 100 -> Plus
arm_3R 18118672..18118793 3431..3552 100 -> Plus
arm_3R 17959580..17960173 1..594 100 -> Plus
arm_3R 17967896..17967945 595..644 100 -> Plus
arm_3R 17975089..17975144 645..700 100 -> Plus
arm_3R 17999654..18000449 701..1496 100 -> Plus
arm_3R 18104074..18104348 1497..1771 100 -> Plus
arm_3R 18104428..18104477 1772..1821 100 -> Plus
arm_3R 18104951..18105057 1822..1928 100 -> Plus
arm_3R 18106521..18106607 1929..2015 100 -> Plus
arm_3R 18107569..18107625 2016..2072 100 -> Plus
arm_3R 18110600..18110657 2073..2130 100 -> Plus
arm_3R 18111194..18111423 2131..2360 100 -> Plus
arm_3R 18113519..18113682 2361..2524 100 -> Plus
arm_3R 18115202..18115283 2525..2606 100 -> Plus
arm_3R 18119181..18120648 3553..5020 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:22:06 Download gff for LD31046.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22019537..22019586 1772..1821 100 -> Plus
3R 22020060..22020166 1822..1928 100 -> Plus
3R 22021630..22021716 1929..2015 100 -> Plus
3R 22022678..22022734 2016..2072 100 -> Plus
3R 22025709..22025766 2073..2130 100 -> Plus
3R 21914763..21915558 701..1496 100 -> Plus
3R 22028628..22028791 2361..2524 100 -> Plus
3R 22030311..22030392 2525..2606 100 -> Plus
3R 21874689..21875282 1..594 100 -> Plus
3R 21883005..21883054 595..644 100 -> Plus
3R 21890198..21890253 645..700 100 -> Plus
3R 22019183..22019457 1497..1771 100 -> Plus
3R 22026303..22026532 2131..2360 100 -> Plus
3R 22030909..22031127 2607..2825 100 -> Plus
3R 22031993..22032185 2826..3018 100 -> Plus
3R 22033144..22033289 3019..3164 100 -> Plus
3R 22033444..22033709 3165..3430 100 -> Plus
3R 22033781..22033902 3431..3552 100 -> Plus
3R 22034290..22035757 3553..5020 100   Plus

LD31046.hyp Sequence

Translation from 1136 to 3994

> LD31046.hyp
MAVSNIVCEWLRALGLAQYAESFLDNGYDDLEICKQVGDPDLDAIGVENP
AHRHKLLKSIRSLREKGAASVYFMLNDPNSLSGSMEILCETPPNNELELV
LREQLETDGVRLTAHPYSTPPSSCLSDKEEDEIYGFGYGVFAPRVARGGL
TQQQQLLQQQTLQTQQSIQQQQQQMQQQQQQLPIVPGQQQQGPHQHQTLP
PNVAHLNFVQQNCLSPRSAYFYEFPPTAEGRETKKRTTLARLLKGLKTVN
RRDRNNQQNGAQARAANDRLRHFQMINGGAGGQQHSFEETIHRLKVQEAM
RKKEKFQREHEEILRDIRQGLLQMSRGEGRMDDTYMYDEALRTGGGMGIA
GLGMPLGVGGNGGGGGAAHYAVSALHHQGHWYDEPPYESDPDDFLMAGLN
CGPAATIQGGRVRFSNNRESTGVISLRSAGDISLPQRGPPRRGLIVPQQP
PNPPTIIPLTHARSHDRESGDYAGSISDLQSVTSRFSTVSIGTNNCTARY
RTLSGGIGESPSLSPSPSSDYEDIGVTRGHGCLPPSLLAAKAKKNGLPHG
KANTICQKATVHHSGEMRSSAKEIGAFNENGRNFVATKDTSRDFSNSQDN
TDRGSMSDQAFACSASSVESLPSASGSSTQALVRPGSPHSSISAEDRTSM
ASCICKAKALVDSLPNPYDKEALKFKKGDLIDVLSMNASGIWKGRCHGRV
GHFKFINVEVLPEQRMKNSSSKTLAAGSRLANSGNGSHNGGPCSVEDLLI
RIGLKEYTSVFVLNGYEDLELFKELEPADLDYLGILNQEHRAKLLTAVQL
LHDIECSDVDIPGSSSENDEARLNNINMKHGASPFGRRHFPRDSGCYEGS
PLPSSQTPTQAVNSTDESNSLDDVVTKCSSEIMKRVESARRCKDNPFKTT
LPGGGRLGKKSFLGGNGLMADDTLTRGGLSEKSSDSGVSSSSLSSGPLKS
ST*

LD31046.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:17:06
Subject Length Description Subject Range Query Range Score Percent Strand
SKIP-PI 1080 CG31163-PI 1..952 1..952 4972 100 Plus
SKIP-PB 952 CG31163-PB 1..952 1..952 4972 100 Plus
SKIP-PF 1064 CG31163-PF 228..1064 116..952 4347 99.5 Plus
SKIP-PE 1064 CG31163-PE 228..1064 116..952 4347 99.5 Plus
SKIP-PJ 1027 CG31163-PJ 228..1027 116..952 4085 95.1 Plus
SKIP-PF 1064 CG31163-PF 1..120 1..120 626 100 Plus
SKIP-PE 1064 CG31163-PE 1..120 1..120 626 100 Plus

LD31046.pep Sequence

Translation from 1136 to 3994

> LD31046.pep
MAVSNIVCEWLRALGLAQYAESFLDNGYDDLEICKQVGDPDLDAIGVENP
AHRHKLLKSIRSLREKGAASVYFMLNDPNSLSGSMEILCETPPNNELELV
LREQLETDGVRLTAHPYSTPPSSCLSDKEEDEIYGFGYGVFAPRVARGGL
TQQQQLLQQQTLQTQQSIQQQQQQMQQQQQQLPIVPGQQQQGPHQHQTLP
PNVAHLNFVQQNCLSPRSAYFYEFPPTAEGRETKKRTTLARLLKGLKTVN
RRDRNNQQNGAQARAANDRLRHFQMINGGAGGQQHSFEETIHRLKVQEAM
RKKEKFQREHEEILRDIRQGLLQMSRGEGRMDDTYMYDEALRTGGGMGIA
GLGMPLGVGGNGGGGGAAHYAVSALHHQGHWYDEPPYESDPDDFLMAGLN
CGPAATIQGGRVRFSNNRESTGVISLRSAGDISLPQRGPPRRGLIVPQQP
PNPPTIIPLTHARSHDRESGDYAGSISDLQSVTSRFSTVSIGTNNCTARY
RTLSGGIGESPSLSPSPSSDYEDIGVTRGHGCLPPSLLAAKAKKNGLPHG
KANTICQKATVHHSGEMRSSAKEIGAFNENGRNFVATKDTSRDFSNSQDN
TDRGSMSDQAFACSASSVESLPSASGSSTQALVRPGSPHSSISAEDRTSM
ASCICKAKALVDSLPNPYDKEALKFKKGDLIDVLSMNASGIWKGRCHGRV
GHFKFINVEVLPEQRMKNSSSKTLAAGSRLANSGNGSHNGGPCSVEDLLI
RIGLKEYTSVFVLNGYEDLELFKELEPADLDYLGILNQEHRAKLLTAVQL
LHDIECSDVDIPGSSSENDEARLNNINMKHGASPFGRRHFPRDSGCYEGS
PLPSSQTPTQAVNSTDESNSLDDVVTKCSSEIMKRVESARRCKDNPFKTT
LPGGGRLGKKSFLGGNGLMADDTLTRGGLSEKSSDSGVSSSSLSSGPLKS
ST*

LD31046.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18073-PA 1017 GF18073-PA 90..914 116..938 3677 92.1 Plus
Dana\GF18072-PA 709 GF18072-PA 1..121 1..121 658 100 Plus
Dana\GF16943-PA 158 GF16943-PA 7..131 4..122 433 66.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11114-PA 927 GG11114-PA 90..927 116..952 4413 98.7 Plus
Dere\GG11112-PA 126 GG11112-PA 1..120 1..120 648 100 Plus
Dere\GG12531-PA 138 GG12531-PA 1..126 1..122 443 66.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21086-PA 950 GH21086-PA 127..929 116..931 3427 89.1 Plus
Dgri\GH21064-PA 578 GH21064-PA 1..128 1..128 640 91.4 Plus
Dgri\GH19753-PA 142 GH19753-PA 5..126 5..122 438 67.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:03
Subject Length Description Subject Range Query Range Score Percent Strand
SKIP-PI 1080 CG31163-PI 1..952 1..952 4972 100 Plus
SKIP-PB 952 CG31163-PB 1..952 1..952 4972 100 Plus
SKIP-PF 1064 CG31163-PF 228..1064 116..952 4347 99.5 Plus
SKIP-PE 1064 CG31163-PE 228..1064 116..952 4347 99.5 Plus
SKIP-PJ 1027 CG31163-PJ 228..1027 116..952 4085 95.1 Plus
SKIP-PG 1034 CG31163-PG 228..1034 116..952 4057 94.2 Plus
SKIP-PH 128 CG31163-PH 1..122 1..122 628 99.2 Plus
SKIP-PF 1064 CG31163-PF 1..120 1..120 626 100 Plus
SKIP-PE 1064 CG31163-PE 1..120 1..120 626 100 Plus
SKIP-PJ 1027 CG31163-PJ 1..120 1..120 626 100 Plus
SKIP-PG 1034 CG31163-PG 1..120 1..120 626 100 Plus
CG34377-PD 374 CG34377-PD 5..124 5..120 433 69.2 Plus
CG34377-PB 374 CG34377-PB 5..124 5..120 433 69.2 Plus
CG34377-PA 374 CG34377-PA 5..124 5..120 433 69.2 Plus
CG34377-PE 385 CG34377-PE 5..124 5..120 433 69.2 Plus
CG34377-PC 453 CG34377-PC 84..203 5..120 433 69.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:35:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10469-PA 982 GI10469-PA 67..881 112..938 3648 89.7 Plus
Dmoj\GI10467-PA 121 GI10467-PA 1..120 1..120 624 95 Plus
Dmoj\GI22286-PA 204 GI22286-PA 5..121 5..117 417 67.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:35:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23211-PA 1128 GL23211-PA 102..678 121..704 2250 83.1 Plus
Dper\GL23209-PA 133 GL23209-PA 1..120 1..120 628 95.8 Plus
Dper\GL24335-PA 182 GL24335-PA 5..127 5..123 442 68.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30145-PB 963 GA30145-PB 1..942 1..931 4160 89.6 Plus
Dpse\GA30145-PC 1084 GA30145-PC 237..1063 116..931 3523 88.3 Plus
Dpse\GA30145-PA 1084 GA30145-PA 237..1063 116..931 3523 88.3 Plus
Dpse\GA30145-PC 1084 GA30145-PC 1..120 1..120 630 95.8 Plus
Dpse\GA30145-PA 1084 GA30145-PA 1..120 1..120 630 95.8 Plus
Dpse\GA30029-PA 379 GA30029-PA 1..124 1..120 446 67.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26409-PA 945 GM26409-PA 111..945 116..952 4391 98.8 Plus
Dsec\GM26407-PA 151 GM26407-PA 1..120 1..120 652 100 Plus
Dsec\GM23665-PA 127 GM23665-PA 1..127 1..123 448 66.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20929-PA 958 GD20929-PA 123..958 116..952 4417 99 Plus
Dsim\GD20927-PA 126 GD20927-PA 1..120 1..120 648 100 Plus
Dsim\GD18474-PA 127 GD18474-PA 1..127 1..123 448 66.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23151-PA 912 GJ23151-PA 91..891 121..931 3523 90.1 Plus
Dvir\GJ23150-PA 588 GJ23150-PA 1..118 1..118 624 96.6 Plus
Dvir\GJ24078-PA 181 GJ24078-PA 5..127 5..123 440 67.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14247-PA 1060 GK14247-PA 111..938 116..936 3572 89.7 Plus
Dwil\GK14246-PA 1448 GK14246-PA 1..120 1..120 653 99.2 Plus
Dwil\GK12996-PA 127 GK12996-PA 1..126 1..122 435 65.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:35:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10277-PA 952 GE10277-PA 117..952 116..952 4390 98.7 Plus
Dyak\GE10275-PA 167 GE10275-PA 1..120 1..120 654 100 Plus
Dyak\GE24054-PA 134 GE24054-PA 1..127 1..123 449 66.9 Plus