Clone LD31082 Report

Search the DGRC for LD31082

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:310
Well:82
Vector:pOT2
Associated Gene/Transcriptkrz-RA
Protein status:LD31082.pep: gold
Preliminary Size:1549
Sequenced Size:1942

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1487 2002-01-01 Sim4 clustering to Release 2
CG1487 2002-05-18 Blastp of sequenced clone
CG1487 2003-01-01 Sim4 clustering to Release 3
krz 2008-04-29 Release 5.5 accounting
krz 2008-08-15 Release 5.9 accounting
krz 2008-12-18 5.12 accounting

Clone Sequence Records

LD31082.complete Sequence

1942 bp (1942 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118946

> LD31082.complete
CAACGCACACATATATTTATTTAACGGAGTTCCAATTAAGCAGGAACAGC
AGAAAAGCAGAATAACAAGCATAACCGCCAAATAACATAATGAACGGTGG
TGGTGGAGGAAGTGGAGGAGCAAATGTGAGCAATGGCTCCAGCACCAATG
TAACAGCTGCCGGGAGCACTGGGGGCGGAAGCGCAGGCGACGAGACTGGT
GGAGATGCCAGCTCCAGACGCCAGGCGACTCGGGTGTTTAAGAAGAGCTC
CTCCAACGGCAAGATAACAGTTTACCTTGGCAAACGGGACTTCGTCGACC
ATGTCACGCACGTGGATCCCATTGACGGTGTTGTCTTCATTGATCCAGAG
TACGTAAAGGACCGTAAGGTTTTTGGCCAGGTGCTTGCCGCCTTTCGGTA
CGGACGTGAAGACCTAGATGTTTTGGGATTAACGTTCCGTAAGGACCTGT
ATCTGGCGCATGAGCAGATCTATCCGCCCATGCAGCTGGACCGCCCGATG
ACCCGGCTTCAGGAAAGGTTAATTAAAAAGCTGGGGCCGAACGCCCATCC
GTTTTATTTTGAGGTTCCGCCCTATTGCCCAGCCTCTGTGTCCTTGCAGC
CGGCTCCTGGAGATGTGGGCAAGTCTTGCGGAGTAGACTACGAGCTGAAG
GCCTTTGTGGGTGAGAACGTGGAGGACAAACCCCACAAGCGGAACTCGGT
GCGACTAACTATTCGCAAAGTCATGTACGCACCATCCAAAGTCGGTGAGC
AGCCATCGATCGAAGTAAGCAAGGAGTTTATGATGAAGCCAAACAAGATC
CATTTGGAAGCTACTTTGGACAAGGAGTTATACCACCACGGCGAAAAAAT
ATCGGTCAACGTTCATGTGGCCAACAACTCAAATCGGACGGTAAAAAAGA
TTAAGGTATGTGTCCGGCAGTTTGCGGATATTTGTCTCTTTTCGACGGCG
CAATATAAATCTGTAGTGGCAGAAATCGAGTCAGAAGACGGATGTCAAGT
GGCTCCGGGATTTACACTCTCGAAGGTATTTGAGTTGTGCCCCCTATTGG
CAAATAATAAGGATAAATGGGGCCTTGCTTTGGACGGGCAGCTAAAGCAT
GAGGACACCAATTTGGCGTCTAGCACTCTCATTACCAATCCTGCTCAGCG
TGAGAGTCTCGGTATTATGGTCCACTATAAGGTGAAGGTGAAGTTGCTGA
TTAGCTCGCCACTTCTAAATGGTGACCTCGTAGCTGAGCTGCCATTCACA
CTAATGCACCCTAAGCCCGAGGAGGAAGAGCATCCACTGTTAGGGGAGCG
ATCGCCACGGGCTAGTTTAGCAGGCGGGGGTCTGCCGTTAGTGAGCATGA
GTGACGGAGAAACTGAATCGGCTACTGGCGGGCAGGATGTGCCAACGACA
ACAAATCTCATTCAGCTGGACGACGACGAGGCACAAGATGACGACATAAT
TTTTGAGGACTTTGCCCGTCTGCGTCTAAAAGGCGCTGAAACAGAGGCCT
AGATGAAAAAGGAATAGATCGAACTATTAATTCATATGAAGAAAATACTA
CTATTATTTTCGGCATTTGTATAATATAAAAAGTATGAGAAAATTGGGCA
ACCTCTAAATGTAAAGTTTTATACCAATAGCCATGGTAAACAGTTGGATT
TAAGCTATTTTATATGTGTAGGCCATATATTGTAGTATCTATAGGGTTTA
AGCTGAAAGTGTACGAATTTTAAAATGTGAAATTGATAAACCAGTCAACA
CACCAGATCTACACAAAATGCCCACGCATAAGTTAACTACACGAGCGAAG
TATTTCGGCCACACCTGTAAAAGTTGAAAGAATTCACAAAATTTGATATG
TAAATGTTGTATAATATTTTTTATTAAATGCCCTCTCCCATTATAAAAAC
GCATAAAACAAAAATTCATTTACAAAAAAAAAAAAAAAAAAA

LD31082.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
krz-RA 2707 krz-RA 89..2014 1..1926 9630 100 Plus
krz.a 2687 krz.a 69..1994 1..1926 9630 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 27870710..27871973 1923..660 6290 99.8 Minus
chr3R 27901430 chr3R 27873367..27874031 665..1 3325 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:24:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 32048604..32049870 1926..660 6335 100 Minus
3R 32079331 3R 32051264..32051928 665..1 3325 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 31789435..31790701 1926..660 6335 100 Minus
3R 31820162 3R 31792095..31792759 665..1 3325 100 Minus
Blast to na_te.dros performed 2019-03-15 22:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 1053..1104 1916..1865 116 69.2 Minus

LD31082.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:28:20 Download gff for LD31082.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 27870710..27871972 661..1923 99 <- Minus
chr3R 27873372..27874031 1..660 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:12:15 Download gff for LD31082.complete
Subject Subject Range Query Range Percent Splice Strand
krz-RA 1..1413 90..1502 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:44:39 Download gff for LD31082.complete
Subject Subject Range Query Range Percent Splice Strand
krz-RB 1..1413 90..1502 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:20:06 Download gff for LD31082.complete
Subject Subject Range Query Range Percent Splice Strand
krz-RA 1..1413 90..1502 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:36:51 Download gff for LD31082.complete
Subject Subject Range Query Range Percent Splice Strand
krz-RA 1..1413 90..1502 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:22:51 Download gff for LD31082.complete
Subject Subject Range Query Range Percent Splice Strand
krz-RA 1..1413 90..1502 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:19:43 Download gff for LD31082.complete
Subject Subject Range Query Range Percent Splice Strand
krz-RA 62..1984 1..1923 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:44:39 Download gff for LD31082.complete
Subject Subject Range Query Range Percent Splice Strand
krz-RA 62..1984 1..1923 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:20:06 Download gff for LD31082.complete
Subject Subject Range Query Range Percent Splice Strand
krz-RA 66..1988 1..1923 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:36:51 Download gff for LD31082.complete
Subject Subject Range Query Range Percent Splice Strand
krz-RA 62..1984 1..1923 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:22:51 Download gff for LD31082.complete
Subject Subject Range Query Range Percent Splice Strand
krz-RA 66..1988 1..1923 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:20 Download gff for LD31082.complete
Subject Subject Range Query Range Percent Splice Strand
3R 32048607..32049869 661..1923 100 <- Minus
3R 32051269..32051928 1..660 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:20 Download gff for LD31082.complete
Subject Subject Range Query Range Percent Splice Strand
3R 32048607..32049869 661..1923 100 <- Minus
3R 32051269..32051928 1..660 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:20 Download gff for LD31082.complete
Subject Subject Range Query Range Percent Splice Strand
3R 32048607..32049869 661..1923 100 <- Minus
3R 32051269..32051928 1..660 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:20:06 Download gff for LD31082.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27874329..27875591 661..1923 100 <- Minus
arm_3R 27876991..27877650 1..660 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:09:14 Download gff for LD31082.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31789438..31790700 661..1923 100 <- Minus
3R 31792100..31792759 1..660 100   Minus

LD31082.hyp Sequence

Translation from 89 to 1501

> LD31082.hyp
MNGGGGGSGGANVSNGSSTNVTAAGSTGGGSAGDETGGDASSRRQATRVF
KKSSSNGKITVYLGKRDFVDHVTHVDPIDGVVFIDPEYVKDRKVFGQVLA
AFRYGREDLDVLGLTFRKDLYLAHEQIYPPMQLDRPMTRLQERLIKKLGP
NAHPFYFEVPPYCPASVSLQPAPGDVGKSCGVDYELKAFVGENVEDKPHK
RNSVRLTIRKVMYAPSKVGEQPSIEVSKEFMMKPNKIHLEATLDKELYHH
GEKISVNVHVANNSNRTVKKIKVCVRQFADICLFSTAQYKSVVAEIESED
GCQVAPGFTLSKVFELCPLLANNKDKWGLALDGQLKHEDTNLASSTLITN
PAQRESLGIMVHYKVKVKLLISSPLLNGDLVAELPFTLMHPKPEEEEHPL
LGERSPRASLAGGGLPLVSMSDGETESATGGQDVPTTTNLIQLDDDEAQD
DDIIFEDFARLRLKGAETEA*

LD31082.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
krz-PB 470 CG1487-PB 1..470 1..470 2439 100 Plus
krz-PA 470 CG1487-PA 1..470 1..470 2439 100 Plus
Arr1-PB 364 CG5711-PB 6..353 48..396 931 50.6 Plus
Arr1-PA 364 CG5711-PA 6..353 48..396 931 50.6 Plus
Arr2-PA 401 CG5962-PA 4..394 46..463 880 43.3 Plus

LD31082.pep Sequence

Translation from 89 to 1501

> LD31082.pep
MNGGGGGSGGANVSNGSSTNVTAAGSTGGGSAGDETGGDASSRRQATRVF
KKSSSNGKITVYLGKRDFVDHVTHVDPIDGVVFIDPEYVKDRKVFGQVLA
AFRYGREDLDVLGLTFRKDLYLAHEQIYPPMQLDRPMTRLQERLIKKLGP
NAHPFYFEVPPYCPASVSLQPAPGDVGKSCGVDYELKAFVGENVEDKPHK
RNSVRLTIRKVMYAPSKVGEQPSIEVSKEFMMKPNKIHLEATLDKELYHH
GEKISVNVHVANNSNRTVKKIKVCVRQFADICLFSTAQYKSVVAEIESED
GCQVAPGFTLSKVFELCPLLANNKDKWGLALDGQLKHEDTNLASSTLITN
PAQRESLGIMVHYKVKVKLLISSPLLNGDLVAELPFTLMHPKPEEEEHPL
LGERSPRASLAGGGLPLVSMSDGETESATGGQDVPTTTNLIQLDDDEAQD
DDIIFEDFARLRLKGAETEA*

LD31082.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17501-PA 485 GF17501-PA 27..485 17..470 2201 92.8 Plus
Dana\GF14811-PA 364 GF14811-PA 6..355 48..398 920 49.7 Plus
Dana\GF10152-PA 401 GF10152-PA 4..394 46..463 897 43.1 Plus
Dana\GF19559-PA 761 GF19559-PA 40..222 35..213 303 34.8 Plus
Dana\GF19559-PA 761 GF19559-PA 357..571 222..390 207 27.9 Plus
Dana\GF23483-PA 164 GF23483-PA 1..164 157..347 187 31.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11843-PA 468 GG11843-PA 1..468 1..470 2448 98.5 Plus
Dere\GG21103-PA 364 GG21103-PA 6..355 48..398 959 50.6 Plus
Dere\GG15065-PA 401 GG15065-PA 4..394 46..463 902 43.6 Plus
Dere\GG18921-PA 819 GG18921-PA 100..279 38..213 313 35.9 Plus
Dere\GG18921-PA 819 GG18921-PA 424..646 222..390 200 28.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17469-PA 494 GH17469-PA 50..494 28..470 2111 90.8 Plus
Dgri\GH11636-PA 364 GH11636-PA 6..355 48..398 943 49.7 Plus
Dgri\GH16146-PA 401 GH16146-PA 4..394 46..463 886 42.6 Plus
Dgri\GH22560-PA 149 GH22560-PA 4..141 46..183 404 50.7 Plus
Dgri\GH12716-PA 801 GH12716-PA 69..269 17..213 314 33.3 Plus
Dgri\GH12716-PA 801 GH12716-PA 416..630 222..390 210 29.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:11
Subject Length Description Subject Range Query Range Score Percent Strand
krz-PB 470 CG1487-PB 1..470 1..470 2439 100 Plus
krz-PA 470 CG1487-PA 1..470 1..470 2439 100 Plus
Arr1-PB 364 CG5711-PB 6..353 48..396 931 50.6 Plus
Arr1-PA 364 CG5711-PA 6..353 48..396 931 50.6 Plus
Arr2-PA 401 CG5962-PA 4..394 46..463 880 43.3 Plus
Arr1-PC 350 CG5711-PC 21..339 77..396 827 49.2 Plus
CG32683-PB 804 CG32683-PB 55..268 14..211 312 31.8 Plus
CG32683-PA 804 CG32683-PA 55..268 14..211 312 31.8 Plus
CG32683-PB 804 CG32683-PB 409..630 222..390 194 27.4 Plus
CG32683-PA 804 CG32683-PA 409..630 222..390 194 27.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22795-PA 498 GI22795-PA 60..498 34..470 2111 92.1 Plus
Dmoj\GI17937-PA 364 GI17937-PA 6..355 48..398 946 49.7 Plus
Dmoj\GI12414-PA 401 GI12414-PA 4..394 46..463 908 43.6 Plus
Dmoj\GI15392-PA 824 GI15392-PA 108..274 48..213 308 36.3 Plus
Dmoj\GI15392-PA 824 GI15392-PA 445..659 222..390 219 30.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24101-PA 479 GL24101-PA 59..479 40..470 2025 90.2 Plus
Dper\GL14653-PA 363 GL14653-PA 6..353 48..396 918 50 Plus
Dper\GL10292-PA 401 GL10292-PA 4..394 46..463 904 43.8 Plus
Dper\GL14887-PA 673 GL14887-PA 135..301 48..213 294 35.7 Plus
Dper\GL14887-PA 673 GL14887-PA 449..564 222..336 198 35.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13309-PA 492 GA13309-PA 59..492 40..470 2120 93.1 Plus
Dpse\GA19076-PA 363 GA19076-PA 6..353 48..396 918 50 Plus
Dpse\GA19261-PA 401 GA19261-PA 4..394 46..463 904 43.8 Plus
Dpse\GA17070-PA 968 GA17070-PA 185..351 48..213 295 35.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16407-PA 471 GM16407-PA 1..471 1..470 2480 99.2 Plus
Dsec\GM17260-PA 364 GM17260-PA 6..355 48..398 959 50.6 Plus
Dsec\GM24922-PA 401 GM24922-PA 4..394 46..463 894 43.3 Plus
Dsec\GM11315-PA 581 GM11315-PA 83..265 35..213 309 35.3 Plus
Dsec\GM11315-PA 581 GM11315-PA 405..513 222..327 183 33 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16195-PA 341 GD16195-PA 1..341 131..470 1792 98.8 Plus
Dsim\GD24126-PA 364 GD24126-PA 6..355 48..398 959 50.6 Plus
Dsim\GD12969-PA 401 GD12969-PA 4..394 46..463 902 43.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22798-PA 489 GJ22798-PA 7..489 2..470 2097 86 Plus
Dvir\GJ17709-PA 364 GJ17709-PA 6..353 48..396 918 49.7 Plus
Dvir\GJ12307-PA 401 GJ12307-PA 4..394 46..463 892 42.9 Plus
Dvir\GJ14789-PA 830 GJ14789-PA 137..303 48..213 306 36.3 Plus
Dvir\GJ14679-PA 92 GJ14679-PA 3..83 316..398 208 49.4 Plus
Dvir\GJ14789-PA 830 GJ14789-PA 456..669 222..390 205 29.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10933-PA 495 GK10933-PA 60..495 41..470 2096 93.4 Plus
Dwil\GK18171-PA 364 GK18171-PA 6..355 48..398 910 49.4 Plus
Dwil\GK17474-PA 401 GK17474-PA 4..394 46..463 901 43.3 Plus
Dwil\GK19772-PA 954 GK19772-PA 209..375 48..213 307 35.1 Plus
Dwil\GK19772-PA 954 GK19772-PA 524..639 222..336 208 37.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23289-PA 471 GE23289-PA 1..471 1..470 2443 97.9 Plus
Dyak\Arr1-PA 364 GE12809-PA 6..355 48..398 955 50.3 Plus
Dyak\GE21289-PA 401 GE21289-PA 4..394 46..463 902 43.6 Plus
Dyak\GE15393-PA 809 GE15393-PA 94..276 35..213 313 35.3 Plus
Dyak\GE15393-PA 809 GE15393-PA 413..636 222..390 200 27.2 Plus