Clone LD31138 Report

Search the DGRC for LD31138

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:311
Well:38
Vector:pOT2
Associated Gene/TranscriptCG7730-RC
Protein status:LD31138.pep: gold
Preliminary Size:2360
Sequenced Size:2106

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7730 2001-10-10 Blastp of sequenced clone
CG7730 2003-01-01 Sim4 clustering to Release 3
CG7730 2008-04-29 Release 5.5 accounting
CG7730 2008-08-15 Release 5.9 accounting
CG7730 2008-12-18 5.12 accounting

Clone Sequence Records

LD31138.complete Sequence

2106 bp (2106 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061387

> LD31138.complete
TGGAAACGAAATTAGCATTTCGACATTGATTTCCCATTAAAATACAGTCT
CTAAATTAAAGTAAGTATATTTAACTTGGGCTGCAGATCAAAAGTGCCAG
ATTCTGCAGTAATTAGGATATGGAGAAAACGGAAAATACTAAAAATTCTC
GCACCACCTACGAAGTGCAAAGGGATTTTGGCTTCAGCAGTGGGCTGCGT
TCGGAAATTATTTGGGATTCACTAGCCCCGGATCAGGGTGATGTTCTAAA
GCAAAAGATAGAGAACCTCATTCGCGATGATGACGCCCGCAATGGCAAGG
CGATTCAACGAAAGCGGGAGCAGCTTTTCCGGAATATTTGGCAGCAGCGC
TGTTACACCAACGGCACATTGCTCTCCGCCATAATTTACGTGCTAGTCAC
GCCGGATACAGACCCGGAATCGGCGCTGCAGTCTACCAACTACTCCTGTC
ACCCGGTTTTTCGCACACGGCGCTGTTTGAAGGGCGAGAACAGCGCCGCT
TGTTGCATGATTTTTGTGGACGAAAATGCACGGGTCTACGCCAATTGGGA
GCAGTTCGTCTTCCGGAACACCTTGCCCAAGGGCTTGATGATCGCCCCTA
GCCAAGGAATTTACACATTCACCGGCGACGAGGAGCCGGGCGTCCAGTTG
ATGGTCCATCCAACGCCAGCAGCACGTGCCAGGTATAAAATTCTGAATGC
TGGCGATAAAGTCGCCACTGTTGGTAGCTTGGTGGCCAGTGTTCCGGCGG
CTGCAGCTTTGGCTGTGCCTCTGGGCGCTCCGCTCGCGATTGCCGCCACC
GCTGTGGGCGTGGCCACCGGAGTCTACAGCACCCTGCGCTCTGCCTCCCA
TCTTATCGATCGTCGACGGCACGGACAGTCCACCTGCATCACGGATACCG
AGGCACGCAGCTCTTGGTTGGGCGTAGCAGGTGGCGTTGTGGGTCTAGGA
GCCAGTGGGGCCACAAAAGCTCTGTCCACCGCTGCAGGAGCTGGCTACAA
AGTTAATCCCGCTGCGCAGTTAGCCGTTAGGGGGATAAATGGTGCCTCAA
TGGTCATCGCCGGAACGGGTGTAGCGAATGGTGTTTACGATTTATATTCG
AAACATGGAGATGACCAAGCCATAAACAGCTTGGACATGCTGAAGATGGC
CTCGCACCTTGTGATATTCACTCATTCCATCAACAATATGCGCATCGCTT
CCAAGGCTACCAACGGGTCTTCCTTGAGGCGAGCACTTCGAAATCAATCC
AGAAAAATCTTTGATCGAATCTCCCAGGAAACAGTTAAGCTGCACAATGA
ATCTGGTCAATTTGATATTGTGAGAACCCTCAACGAAATCCCTTTTAAGG
AGGTACTCCTCAGTCTTCACAATATGAACTCACACCTAAGTCAGGGACTT
ACAGTGGCCACCACTTTATTGCCCCAAATACTGAGTTACGGCATTGGCGG
GCAGATGGTGATCAATATGGACATGCTCGCACAGAAGTTCGGCGGAAAAT
TCGTTGAGCATATCGGCAATCTGGCTAGCTTTACGGACGTTTTGGAGGCC
ATGGCCAGATACTTCAGCGATCAGGCTGTACAGCTTCTAATGCAGATGAC
CCGCACATTCGTAGAGGAGAACGTGGATTACATTGATCGCTCGCTGAATA
CGTTCGTATCAACTGAAGCGGTCCTCTATCGCATTCTAATGCATTGCGTT
AAAACCTTTGATGACTTCGGCGAAGATTTCCTTCAGAGACAACGTGAGGA
TATTTTGATGGTGGTATCCAAGTACTTTCGATCACTGGAGCCAGTTGGCG
AACAAAACTGCCGCAAGTACAAATGCAACGTTTGCAAAGGCGCCTACTAT
ATTAGTTCCATATAAGCTGATTCCATGGTTCGAGCTGTCGGTTTATTAAG
TGATTTAGTGATTAATAGATTGTGATACAACAAAGATTTGTTAGCCATCG
TGACTCATTTGTACTAGGATTGTAATAATCTTTTAAGCCTTTATATGCGT
CTTCTAAACCTAATATGCTGTTAAATTCTCTGAATGTTTGTTTAGTTTTA
ACTGTCCACCAATTTTTATAAAAAACACTTTAATTCCGAAAAAAAAAAAA
AAAAAA

LD31138.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7730-RC 2132 CG7730-RC 41..2129 1..2089 10445 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 17017273..17018152 221..1100 4370 99.8 Plus
chr3L 24539361 chr3L 17018421..17019259 1250..2088 4120 99.4 Plus
chr3L 24539361 chr3L 17016995..17017214 1..220 1055 98.6 Plus
chr3L 24539361 chr3L 17018210..17018362 1100..1252 750 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:24:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17027828..17028707 221..1100 4400 100 Plus
3L 28110227 3L 17028976..17029815 1250..2089 4200 100 Plus
3L 28110227 3L 17027550..17027769 1..220 1100 100 Plus
3L 28110227 3L 17028765..17028917 1100..1252 765 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 17020928..17021807 221..1100 4400 100 Plus
3L 28103327 3L 17022076..17022915 1250..2089 4200 100 Plus
3L 28103327 3L 17020650..17020869 1..220 1100 100 Plus
3L 28103327 3L 17021865..17022017 1100..1252 765 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:27:05 has no hits.

LD31138.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:28:21 Download gff for LD31138.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 17016995..17017214 1..220 98 -> Plus
chr3L 17017273..17018152 221..1100 99 -> Plus
chr3L 17018211..17018366 1101..1257 97 -> Plus
chr3L 17018429..17019259 1258..2088 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:12:19 Download gff for LD31138.complete
Subject Subject Range Query Range Percent Splice Strand
CG7730-RC 1..1746 120..1865 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:54:24 Download gff for LD31138.complete
Subject Subject Range Query Range Percent Splice Strand
CG7730-RC 1..1746 120..1865 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:20:11 Download gff for LD31138.complete
Subject Subject Range Query Range Percent Splice Strand
CG7730-RC 1..1746 120..1865 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:23:25 Download gff for LD31138.complete
Subject Subject Range Query Range Percent Splice Strand
CG7730-RC 1..1746 120..1865 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:22:54 Download gff for LD31138.complete
Subject Subject Range Query Range Percent Splice Strand
CG7730-RC 1..1746 120..1865 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:39:50 Download gff for LD31138.complete
Subject Subject Range Query Range Percent Splice Strand
CG7730-RC 30..2117 1..2088 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:54:24 Download gff for LD31138.complete
Subject Subject Range Query Range Percent Splice Strand
CG7730-RC 30..2117 1..2088 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:20:11 Download gff for LD31138.complete
Subject Subject Range Query Range Percent Splice Strand
CG7730-RC 36..2123 1..2088 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:23:25 Download gff for LD31138.complete
Subject Subject Range Query Range Percent Splice Strand
CG7730-RC 30..2117 1..2088 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:22:54 Download gff for LD31138.complete
Subject Subject Range Query Range Percent Splice Strand
CG7730-RC 36..2123 1..2088 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:21 Download gff for LD31138.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17027550..17027769 1..220 100 -> Plus
3L 17027828..17028707 221..1100 100 -> Plus
3L 17028766..17028917 1101..1252 100 -> Plus
3L 17028979..17029814 1253..2088 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:21 Download gff for LD31138.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17027550..17027769 1..220 100 -> Plus
3L 17027828..17028707 221..1100 100 -> Plus
3L 17028766..17028917 1101..1252 100 -> Plus
3L 17028979..17029814 1253..2088 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:21 Download gff for LD31138.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17027550..17027769 1..220 100 -> Plus
3L 17027828..17028707 221..1100 100 -> Plus
3L 17028766..17028917 1101..1252 100 -> Plus
3L 17028979..17029814 1253..2088 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:20:11 Download gff for LD31138.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17020650..17020869 1..220 100 -> Plus
arm_3L 17020928..17021807 221..1100 100 -> Plus
arm_3L 17021866..17022017 1101..1252 100 -> Plus
arm_3L 17022079..17022914 1253..2088 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:00:34 Download gff for LD31138.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17020650..17020869 1..220 100 -> Plus
3L 17020928..17021807 221..1100 100 -> Plus
3L 17021866..17022017 1101..1252 100 -> Plus
3L 17022079..17022914 1253..2088 100   Plus

LD31138.hyp Sequence

Translation from 119 to 1864

> LD31138.hyp
MEKTENTKNSRTTYEVQRDFGFSSGLRSEIIWDSLAPDQGDVLKQKIENL
IRDDDARNGKAIQRKREQLFRNIWQQRCYTNGTLLSAIIYVLVTPDTDPE
SALQSTNYSCHPVFRTRRCLKGENSAACCMIFVDENARVYANWEQFVFRN
TLPKGLMIAPSQGIYTFTGDEEPGVQLMVHPTPAARARYKILNAGDKVAT
VGSLVASVPAAAALAVPLGAPLAIAATAVGVATGVYSTLRSASHLIDRRR
HGQSTCITDTEARSSWLGVAGGVVGLGASGATKALSTAAGAGYKVNPAAQ
LAVRGINGASMVIAGTGVANGVYDLYSKHGDDQAINSLDMLKMASHLVIF
THSINNMRIASKATNGSSLRRALRNQSRKIFDRISQETVKLHNESGQFDI
VRTLNEIPFKEVLLSLHNMNSHLSQGLTVATTLLPQILSYGIGGQMVINM
DMLAQKFGGKFVEHIGNLASFTDVLEAMARYFSDQAVQLLMQMTRTFVEE
NVDYIDRSLNTFVSTEAVLYRILMHCVKTFDDFGEDFLQRQREDILMVVS
KYFRSLEPVGEQNCRKYKCNVCKGAYYISSI*

LD31138.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7730-PC 581 CG7730-PC 1..581 1..581 2970 100 Plus
pst-PG 682 CG8588-PG 7..451 6..425 827 43 Plus
pst-PE 682 CG8588-PE 7..451 6..425 827 43 Plus
pst-PF 707 CG8588-PF 7..476 6..425 792 40.9 Plus
CG32243-PA 485 CG32243-PA 239..481 339..578 199 26.6 Plus
pst-PG 682 CG8588-PG 473..679 364..578 177 25 Plus
pst-PE 682 CG8588-PE 473..679 364..578 177 25 Plus
pst-PF 707 CG8588-PF 498..704 364..578 177 25 Plus

LD31138.pep Sequence

Translation from 119 to 1864

> LD31138.pep
MEKTENTKNSRTTYEVQRDFGFSSGLRSEIIWDSLAPDQGDVLKQKIENL
IRDDDARNGKAIQRKREQLFRNIWQQRCYTNGTLLSAIIYVLVTPDTDPE
SALQSTNYSCHPVFRTRRCLKGENSAACCMIFVDENARVYANWEQFVFRN
TLPKGLMIAPSQGIYTFTGDEEPGVQLMVHPTPAARARYKILNAGDKVAT
VGSLVASVPAAAALAVPLGAPLAIAATAVGVATGVYSTLRSASHLIDRRR
HGQSTCITDTEARSSWLGVAGGVVGLGASGATKALSTAAGAGYKVNPAAQ
LAVRGINGASMVIAGTGVANGVYDLYSKHGDDQAINSLDMLKMASHLVIF
THSINNMRIASKATNGSSLRRALRNQSRKIFDRISQETVKLHNESGQFDI
VRTLNEIPFKEVLLSLHNMNSHLSQGLTVATTLLPQILSYGIGGQMVINM
DMLAQKFGGKFVEHIGNLASFTDVLEAMARYFSDQAVQLLMQMTRTFVEE
NVDYIDRSLNTFVSTEAVLYRILMHCVKTFDDFGEDFLQRQREDILMVVS
KYFRSLEPVGEQNCRKYKCNVCKGAYYISSI*

LD31138.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10100-PA 576 GF10100-PA 2..571 10..580 2211 74.1 Plus
Dana\GF18460-PA 579 GF18460-PA 11..579 15..581 878 37 Plus
Dana\GF24280-PA 688 GF24280-PA 1..460 1..425 865 39.7 Plus
Dana\GF24280-PA 688 GF24280-PA 549..688 436..581 206 29.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13601-PA 587 GG13601-PA 1..587 1..581 2767 92.8 Plus
Dere\GG14972-PA 661 GG14972-PA 3..431 5..425 784 40.2 Plus
Dere\GG14175-PA 483 GG14175-PA 236..477 334..576 222 25.1 Plus
Dere\GG14175-PA 483 GG14175-PA 5..157 3..165 199 29.9 Plus
Dere\GG14972-PA 661 GG14972-PA 453..656 364..576 178 23.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24268-PA 604 GH24268-PA 3..604 11..581 1694 56 Plus
Dgri\GH15525-PA 581 GH15525-PA 2..581 10..581 1622 55.4 Plus
Dgri\GH15907-PA 560 GH15907-PA 14..555 9..576 745 33.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7730-PC 581 CG7730-PC 1..581 1..581 2970 100 Plus
pst-PG 682 CG8588-PG 7..451 6..425 827 43 Plus
pst-PE 682 CG8588-PE 7..451 6..425 827 43 Plus
pst-PF 707 CG8588-PF 7..476 6..425 792 40.9 Plus
CG32243-PA 485 CG32243-PA 239..481 339..578 199 26.6 Plus
CG32243-PA 485 CG32243-PA 13..159 12..168 194 30.4 Plus
pst-PG 682 CG8588-PG 473..679 364..578 177 25 Plus
pst-PE 682 CG8588-PE 473..679 364..578 177 25 Plus
pst-PF 707 CG8588-PF 498..704 364..578 177 25 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21425-PA 580 GI21425-PA 2..580 10..581 1742 58.2 Plus
Dmoj\GI16802-PA 572 GI16802-PA 2..572 10..581 1535 54.3 Plus
Dmoj\GI16559-PA 686 GI16559-PA 6..451 7..425 849 42.3 Plus
Dmoj\GI16559-PA 686 GI16559-PA 473..686 364..581 170 26.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10393-PA 579 GL10393-PA 2..579 10..581 2065 69.2 Plus
Dper\GL16193-PA 560 GL16193-PA 3..560 2..581 2062 66.2 Plus
Dper\GL24331-PA 681 GL24331-PA 1..459 1..430 820 42.6 Plus
Dper\GL24331-PA 681 GL24331-PA 542..681 436..581 199 30.1 Plus
Dper\GL25254-PA 379 GL25254-PA 180..362 396..576 189 30.5 Plus
Dper\GL25254-PA 379 GL25254-PA 8..145 12..165 186 31.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24960-PA 588 GA24960-PA 3..588 2..581 2123 68.1 Plus
Dpse\GA28419-PA 588 GA28419-PA 3..588 2..581 2096 68.6 Plus
Dpse\GA21184-PA 681 GA21184-PA 1..459 1..430 825 42.6 Plus
Dpse\GA23741-PA 391 GA23741-PA 8..162 12..165 211 33.8 Plus
Dpse\GA23741-PA 391 GA23741-PA 175..374 380..576 204 30.4 Plus
Dpse\GA21184-PA 681 GA21184-PA 542..681 436..581 199 30.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25682-PA 581 GM25682-PA 1..581 1..581 3047 96.9 Plus
Dsec\GM13765-PA 233 GM13765-PA 7..227 6..208 372 39.7 Plus
Dsec\GM13964-PA 479 GM13964-PA 228..478 325..581 232 24.8 Plus
Dsec\GM13964-PA 479 GM13964-PA 13..156 12..165 191 30.4 Plus
Dsec\GM13767-PA 325 GM13767-PA 116..325 364..581 180 26.5 Plus
Dsec\GM13766-PA 80 GM13766-PA 3..78 225..300 174 51.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14687-PA 581 GD14687-PA 1..581 1..581 3053 97.2 Plus
Dsim\GD13064-PA 682 GD13064-PA 7..451 6..425 839 42.1 Plus
Dsim\GD13247-PA 482 GD13247-PA 239..481 339..581 231 25.1 Plus
Dsim\GD13064-PA 682 GD13064-PA 473..682 364..581 196 25.6 Plus
Dsim\GD13247-PA 482 GD13247-PA 13..156 12..165 184 29.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16442-PA 583 GJ16442-PA 2..583 10..581 1759 58.4 Plus
Dvir\GJ12547-PA 572 GJ12547-PA 2..572 10..581 1688 58.5 Plus
Dvir\GJ12811-PA 694 GJ12811-PA 20..462 5..425 856 42.6 Plus
Dvir\GJ12811-PA 694 GJ12811-PA 560..694 446..581 166 29 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20460-PA 587 GK20460-PA 2..587 10..581 2019 63.5 Plus
Dwil\GK25321-PA 588 GK25321-PA 7..447 10..425 733 40.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19896-PA 587 GE19896-PA 1..587 1..581 2790 92.3 Plus
Dyak\pst-PA 666 GE20418-PA 3..433 2..425 701 41 Plus
Dyak\GE20602-PA 484 GE20602-PA 239..478 337..576 245 28.1 Plus
Dyak\GE20602-PA 484 GE20602-PA 14..157 12..165 189 29.7 Plus
Dyak\pst-PA 666 GE20418-PA 455..666 364..581 164 25.3 Plus