Clone LD31161 Report

Search the DGRC for LD31161

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:311
Well:61
Vector:pOT2
Associated Gene/TranscriptDoa-RK
Protein status:LD31161.pep: gold
Preliminary Size:3891
Sequenced Size:3720

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1658 2001-01-01 Release 2 assignment
CG33553 2001-11-29 Blastp of sequenced clone
CG1658 2003-01-01 Sim4 clustering to Release 3
Doa 2008-04-29 Release 5.5 accounting
Doa 2008-08-15 Release 5.9 accounting
Doa 2008-12-18 5.12 accounting

Clone Sequence Records

LD31161.complete Sequence

3720 bp (3720 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069573

> LD31161.complete
TGACCAACTGTTGCACCACCCACCTGCCGCAGCTCTCCAAGTTCACCTCA
TCGTTCCATATTGCCCCCACCACAGCAACAACCACAGCCGCTACAGCAAC
GCCGACCCCAACAGGAGCTGCAACAACAAGCGATCAGCAGCAACAAAGTG
GCGGAACACCGGCGATGGTGGCTGCCAATTTGGAGGTGCCAACATCGTCA
TCGTCATCAGCGGCCACAAAGCGCCAGAAAGATGTTGACAACAAGCTAGA
AAAATGCTTGAACGACATGCTAAAGTTGAAGACCAGCAGCAACAACAACA
GCACTAGTAACAGCAATAATAATGCAATCATGTCGCATTCGCTGACGGGC
GAGCACAAAGACCCGAAGACTGCACTCGAAGGCCCCACGAGCAGCAGCAG
CAGCAGCAGCAGCAAGTACATAGGTGAATCTCAGATCCCCGTGCCAGTTC
AGCTGTACGATCCGCAGAAGCCGTTGCTGCAGCAACAGCAGCAGCAACAA
AGGATCTGCTATCCCATAGGCAAATCTAACTCTACCTCTCAGCTACCCAT
GGGCGGCTATCAGCGATTGCTGCAACATCAGCAGCAACAACATCACCAAC
AGCAACAGCAGCAACATCAGGAACAGCAGCAGTATCCGCAGCACAAGCGA
CCCTTCCTCAACTGGAATAGCTTTGCATGTTCCGCCATGAACGGAGCGAG
TGATCCCTTCATGCAGCAGCAACACATGCCTGCCCACCAGCAACAGCAGC
ATCTGCCACACAAGCTGCAGCAATCATACTCCTCGTCTCATGTGCCCAAG
CAGGCGCCCAAATCGGGACTGGCCATGTTTCTGCAGAAGAACACCAACAA
GGAGAACAAGTTTGGCCAGCCGATGCAGCAGCAGCCACCCGGCATGATGC
CCCAGATGTATGGATACCAGGCGCCCCAGCAGCAATCCAAGATAGGCTAT
CCCCGCACAGGTGCCCCACTGACGCACTCGGCCTCCTTCAGCTCCGCCCA
AAGGCCGACGGCCCTGCAGTTCCACCAGCAACATCAGCAGCAGCAGCATC
TGCAGCAACAGCAGCAACACCCCCAGCAGCAACAACATCAGCATTCCAGC
TTTGGGGTGGGCATGATGAGTAGGAATTACTATAATATGCCCAAGCAGCC
CGAGCGCAAGCCGCTGCAGACCTTTGATCCGTATGCCTATCCCAAGCCGA
ATCAGATGCAGCCGGTCAAGTACCAGCAGCAGCAACAGCATCCGCATACG
CAGTTTCAGAATGCTTCCGCTGGAGGAGGCGGTGGCGGTGCTGCTGGGCT
TCAATACGATCCAAATACAAATACGCAATTGTTTTACGCGTCGCCGGCGT
CATCGTCATCGAACAAGCAACCGCAACAACCGCAACAGCAACAGCAGCAG
CAGCAGTCCCAGCTACAACAAAGCAATTCTGTCATATTCAATCACTCGGG
CCAGCAACACCAACCACATCAACAGCAGCAGAATGAAATGTCCAAGTCCG
CATTGGGGCTGCACTTCATCGAGACAGCAAAGCCCGTCATTCAAGATGAT
GCTGATGGTCACTTAATTTACCACACCGGAGACATTCTCCATCACAGATA
TAAGATCATGGCCACACTGGGCGAGGGAACTTTTGGACGTGTGGTCAAGG
TCAAAGATATGGAGCGTGATTACTGCATGGCTTTAAAGATTATTAAGAAC
GTGGAAAAGTACCGCGAAGCTGCCAAGCTGGAAATAAATGCTTTGGAAAA
GATTGCCCAAAAGGATCCGCATTGTGATCATTTGTGCGTCAAAATGATTG
ACTGGTTTGATTATCATGGACACATGTGTATAGTTTTTGAAATGTTGGGG
CTCAGTGTTTTCGATTTTTTGCGAGAGAACAACTATGAGCCATACCCGCT
GGACCAAGTGCGCCATATGGCCTATCAATTATGCTACTCTGTGAAATTTC
TACATGACAATCGTTTAACGCACACAGATCTCAAGCCGGAGAACATACTC
TTCGTCGACTCGGATTATACTTCTCACTATAATCATAAGATTAACCGCGA
GGTGCGCCGCGTCAAGAATACGGACGTTCGCCTAATCGACTTCGGGTCGG
CCACCTTCGACCACGAGCACCACAGCACAATTGTCTCGACGCGACATTAC
CGCGCGCCAGAGGTCATACTGGAGCTGGGGTGGTCACAGCCGTGTGACGT
TTGGTCCATTGGGTGCATCTTGTTCGAACTGTATCTGGGAATCACGCTCT
TCCAAACGCACGACAATCGCGAACACTTGGCCATGATGGAGCGAATCTTG
GGACAAATACCATATCGCATGGCACGCAATCATACTCTTTATAGCAAAAC
CAAAACAAAGTACTTCTATCATGGTAAGTTAGATTGGGATGAGAAGTCCA
GTGCGGGTCGCTACGTCCGTGATCACTGCAAGCCGTTGTTCCTGTGCCAG
CTGAGCGACAGCGAGGACCACTGTGAGCTCTTCAGTCTGATCAAGAAGAT
GCTGGAGTACGAGCCGTCGTCACGCATCACGTTAGGTGAGGCCCTGCATC
ATCCGTTCTTTGATAGGCTGCCACCACACCATCGAGTAGGTGAGGTCAGC
AACAAGCAGCCCCTTTCGTCGGGCAGCAGCAGCCGCGAACGATCGCATAG
CCTCTCCAGATGAGAATTACAGCGATTTGGTTATTGTTGACAGACAGCGC
TAATTAAGTACTCACTCATGCAAACATACACTCAAGGCAGTCGTCCAGCA
ACGTCTTGCACCCGACTCGTAGAGTAGACCAGCAACTTTACGACGAACCC
TATTTTAAGAGCAAAAGTCTTATTTTAAATTTTTGAACTTGACTTGTATA
GATGTTTATTATACAAAAATCCATTGATCCCTTTTGATCCTTTGTTTCCA
AATACTTCGAGCACATGTTGCTGTGCATTATATTTAGAGCTGTGTAGCGC
CATGCTGCGCTTGTGCATTGTACCATACCCGCCAACAGTGTTTGTTCTGT
AATGATAACCAAATCGTGTATATTATTGAAAGTGCGGTGCGTCTTCCCGA
CACCAGAACCTAATTGTAAATGTCTTGCATTGTGCACACCCCAAGGTGGA
GGAGACTAATTGAACCGACTGCAAACCGATAATTGGAATATACAAATGTA
GTTGTAAAATAAGAAAGTCGCTTAAGCGCTAGTTGGAATGCATCCCCATG
TCTACACCTGTCACTGAACCGGGAGCCGACTAATTTGTAATTAATGCACC
ATTTCGAGAGCGTGAACTGAAAGCTAATGCAAGCCATTATGTACACCGCC
CACGAATGTACGGATTATTGTAAATGTAAAGAGCAATTGTTATGCCACCA
TGTGTACACTTCAGCGATCGCAGCGCATTTTGTGTAAATTCAGTAGCAGC
CCCAGAGTCATCTCTCTTAGAATACGTTTTCAAATGTGTAGAACCGTTGC
CGGCCTGTTTTGTTCGTTTTCGTTTACAACCGAATATCGAAAGATCAACC
CATTTACACATTGCTACACACAAAGTATAATTGAATATACTTATACATAC
TTAATTCAAATGATTGTGAGTTAGTTTAATATTACATAAATATTAATTAT
AAATTACATTATTTGCAATTTAACCCGATCAACCAGCATATAAGATAAAA
ACCAATATTGTCAAGTTATTAAAAAGTGAAATAAATCTTAAATAAAAAAA
AAAAAAAAAAAAAAAAAAAA

LD31161.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
Doa.g 5797 Doa.g 2054..5752 1..3699 18495 100 Plus
Doa.q 7402 Doa.q 3659..7357 1..3699 18495 100 Plus
Doa.h 5778 Doa.h 2035..5733 1..3699 18495 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 24732652..24734174 1..1523 7555 99.7 Plus
chr3R 27901430 chr3R 24744609..24745768 2534..3693 5800 100 Plus
chr3R 27901430 chr3R 24744336..24744547 2326..2537 1060 100 Plus
chr3R 27901430 chr3R 24743685..24743856 1871..2042 860 100 Plus
chr3R 27901430 chr3R 24743916..24744087 2043..2214 845 99.4 Plus
chr3R 27901430 chr3R 24743349..24743463 1666..1780 575 100 Plus
chr3R 27901430 chr3R 24744151..24744265 2212..2326 575 100 Plus
chr3R 27901430 chr3R 24743533..24743623 1781..1871 455 100 Plus
chr3R 27901430 chr3R 24742486..24742563 1522..1599 390 100 Plus
chr3R 27901430 chr3R 24743221..24743287 1600..1666 335 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:24:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28909655..28911177 1..1523 7615 100 Plus
3R 32079331 3R 28921613..28922778 2534..3699 5830 100 Plus
3R 32079331 3R 28921340..28921551 2326..2537 1060 100 Plus
3R 32079331 3R 28920689..28920860 1871..2042 860 100 Plus
3R 32079331 3R 28920920..28921091 2043..2214 860 100 Plus
3R 32079331 3R 28920353..28920467 1666..1780 575 100 Plus
3R 32079331 3R 28921155..28921269 2212..2326 575 100 Plus
3R 32079331 3R 28920537..28920627 1781..1871 455 100 Plus
3R 32079331 3R 28919490..28919567 1522..1599 390 100 Plus
3R 32079331 3R 28920225..28920291 1600..1666 335 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 28650486..28652008 1..1523 7615 100 Plus
3R 31820162 3R 28662444..28663609 2534..3699 5830 100 Plus
3R 31820162 3R 28662171..28662382 2326..2537 1060 100 Plus
3R 31820162 3R 28661751..28661922 2043..2214 860 100 Plus
3R 31820162 3R 28661520..28661691 1871..2042 860 100 Plus
3R 31820162 3R 28661986..28662100 2212..2326 575 100 Plus
3R 31820162 3R 28661184..28661298 1666..1780 575 100 Plus
3R 31820162 3R 28661368..28661458 1781..1871 455 100 Plus
3R 31820162 3R 28660321..28660398 1522..1599 390 100 Plus
3R 31820162 3R 28661056..28661122 1600..1666 335 100 Plus
2R 25260384 2R 10235175..10235235 632..572 200 88.5 Minus
3R 31820162 3R 23133501..23133572 643..572 195 84.7 Minus
X 23527363 X 3741804..3741863 631..572 195 88.3 Minus
Blast to na_te.dros performed 2019-03-16 20:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2999 67..770 377 55.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2376..2958 73..651 373 56.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2331..2990 450..1094 353 53.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2792 282..773 347 57.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2301..2854 542..1093 313 54.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..7018 575..868 299 60.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6470..6944 205..662 281 56.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2596..2987 1033..1421 276 56.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2772..2991 554..778 229 58.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2476 476..643 228 62.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..7053 285..631 226 58 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6764..7018 70..316 218 61.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2315..2435 1361..1484 215 68 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6785..6861 70..145 211 76.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6951 390..643 204 59.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6413..6859 67..500 202 54 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..7035 386..631 198 58.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6771..6885 1366..1483 195 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6743..6897 70..218 193 61.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2596..2838 74..314 190 58.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6892 587..773 187 59.4 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 481..683 59..254 187 57.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6661..7200 75..607 185 52.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6717..7026 1188..1502 183 56.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6759..6894 282..420 176 62.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6779..7059 386..672 175 57 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6750..6861 1366..1480 171 63.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6780..7009 282..511 167 58.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2475..2613 1339..1479 160 61.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2595..2657 1365..1426 159 74.6 Plus
roo 9092 roo DM_ROO 9092bp 971..1150 1303..1487 157 58 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6819 1376..1483 156 64.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2527 1219..1420 154 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2380..2518 279..420 152 60.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6871 604..773 151 60.6 Plus
roo 9092 roo DM_ROO 9092bp 1099..1161 269..330 150 73 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2260..2527 136..420 149 57.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6871 190..322 145 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2336..2396 713..773 143 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6799..6859 713..773 143 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2357..2420 713..773 142 71.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6891 1073..1246 142 55.2 Plus
roo 9092 roo DM_ROO 9092bp 961..1150 290..500 139 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1517..1602 1409..1495 134 68.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6780 714..772 133 69.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6778..6841 713..773 133 70.3 Plus
roo 9092 roo DM_ROO 9092bp 1083..1141 1195..1253 133 69.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2381 714..773 131 71.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6757..7112 713..1083 131 53 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3219..3331 398..510 131 62.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 7372..7569 569..761 130 56.7 Plus
copia 5143 copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). 189..350 3518..3683 130 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1555..1599 282..326 126 75.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6736..6796 713..773 125 67.2 Plus
TART-A 13424 TART-A 13424bp 1725..1773 269..319 123 78.8 Plus
TART-A 13424 TART-A 13424bp 12903..12951 269..319 123 78.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6747..7016 1195..1476 120 54 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6916..7012 2520..2427 118 59.8 Minus
roo 9092 roo DM_ROO 9092bp 1071..1114 285..327 118 77.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6703..6846 171..318 117 59.9 Plus

LD31161.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:31:17 Download gff for LD31161.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 24743916..24744085 2043..2212 99 -> Plus
chr3R 24744152..24744265 2213..2326 100 -> Plus
chr3R 24744337..24744545 2327..2535 100 -> Plus
chr3R 24732652..24733219 1..568 95 == Plus
chr3R 24733295..24733666 644..1015 100 == Plus
chr3R 24733745..24734016 1094..1365 99 == Plus
chr3R 24734097..24734174 1446..1523 100 -> Plus
chr3R 24742488..24742563 1524..1599 100 -> Plus
chr3R 24743221..24743287 1600..1666 100 -> Plus
chr3R 24743350..24743463 1667..1780 100 -> Plus
chr3R 24743533..24743623 1781..1871 100 -> Plus
chr3R 24743686..24743856 1872..2042 100 -> Plus
chr3R 24744611..24745768 2536..3693 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:22:46 Download gff for LD31161.complete
Subject Subject Range Query Range Percent Splice Strand
Doa-RP 3476..6138 1..2663 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:19:54 Download gff for LD31161.complete
Subject Subject Range Query Range Percent Splice Strand
Doa-RP 3476..6138 1..2663 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:23:33 Download gff for LD31161.complete
Subject Subject Range Query Range Percent Splice Strand
Doa-RP 3476..6138 1..2663 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:46:07 Download gff for LD31161.complete
Subject Subject Range Query Range Percent Splice Strand
Doa-RP 3476..6138 1..2663 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:05:28 Download gff for LD31161.complete
Subject Subject Range Query Range Percent Splice Strand
Doa-RP 3476..6138 1..2663 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:22:44 Download gff for LD31161.complete
Subject Subject Range Query Range Percent Splice Strand
Doa-RP 3476..7168 1..3693 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:19:54 Download gff for LD31161.complete
Subject Subject Range Query Range Percent Splice Strand
Doa-RP 3476..7168 1..3693 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:33 Download gff for LD31161.complete
Subject Subject Range Query Range Percent Splice Strand
Doa-RK 1..3693 1..3693 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:46:07 Download gff for LD31161.complete
Subject Subject Range Query Range Percent Splice Strand
Doa-RP 3476..7168 1..3693 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:28 Download gff for LD31161.complete
Subject Subject Range Query Range Percent Splice Strand
Doa-RK 1..3693 1..3693 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:31:17 Download gff for LD31161.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28920690..28920860 1872..2042 100 -> Plus
3R 28920920..28921089 2043..2212 100 -> Plus
3R 28921156..28921269 2213..2326 100 -> Plus
3R 28921341..28921549 2327..2535 100 -> Plus
3R 28920354..28920467 1667..1780 100 -> Plus
3R 28920537..28920627 1781..1871 100 -> Plus
3R 28909655..28911177 1..1523 100 -> Plus
3R 28919492..28919567 1524..1599 100 -> Plus
3R 28920225..28920291 1600..1666 100 -> Plus
3R 28921615..28922772 2536..3693 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:31:17 Download gff for LD31161.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28920690..28920860 1872..2042 100 -> Plus
3R 28920920..28921089 2043..2212 100 -> Plus
3R 28921156..28921269 2213..2326 100 -> Plus
3R 28921341..28921549 2327..2535 100 -> Plus
3R 28920354..28920467 1667..1780 100 -> Plus
3R 28920537..28920627 1781..1871 100 -> Plus
3R 28909655..28911177 1..1523 100 -> Plus
3R 28919492..28919567 1524..1599 100 -> Plus
3R 28920225..28920291 1600..1666 100 -> Plus
3R 28921615..28922772 2536..3693 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:31:17 Download gff for LD31161.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28920690..28920860 1872..2042 100 -> Plus
3R 28920920..28921089 2043..2212 100 -> Plus
3R 28921156..28921269 2213..2326 100 -> Plus
3R 28921341..28921549 2327..2535 100 -> Plus
3R 28920354..28920467 1667..1780 100 -> Plus
3R 28920537..28920627 1781..1871 100 -> Plus
3R 28909655..28911177 1..1523 100 -> Plus
3R 28919492..28919567 1524..1599 100 -> Plus
3R 28920225..28920291 1600..1666 100 -> Plus
3R 28921615..28922772 2536..3693 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:33 Download gff for LD31161.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24735377..24736899 1..1523 100 -> Plus
arm_3R 24745214..24745289 1524..1599 100 -> Plus
arm_3R 24745947..24746013 1600..1666 100 -> Plus
arm_3R 24746076..24746189 1667..1780 100 -> Plus
arm_3R 24746259..24746349 1781..1871 100 -> Plus
arm_3R 24746412..24746582 1872..2042 100 -> Plus
arm_3R 24746642..24746811 2043..2212 100 -> Plus
arm_3R 24746878..24746991 2213..2326 100 -> Plus
arm_3R 24747063..24747271 2327..2535 100 -> Plus
arm_3R 24747337..24748494 2536..3693 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:22:29 Download gff for LD31161.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28650486..28652008 1..1523 100 -> Plus
3R 28660323..28660398 1524..1599 100 -> Plus
3R 28661056..28661122 1600..1666 100 -> Plus
3R 28661185..28661298 1667..1780 100 -> Plus
3R 28661368..28661458 1781..1871 100 -> Plus
3R 28661521..28661691 1872..2042 100 -> Plus
3R 28661751..28661920 2043..2212 100 -> Plus
3R 28661987..28662100 2213..2326 100 -> Plus
3R 28662172..28662380 2327..2535 100 -> Plus
3R 28662446..28663603 2536..3693 100   Plus

LD31161.hyp Sequence

Translation from 2 to 2662

> LD31161.hyp
TNCCTTHLPQLSKFTSSFHIAPTTATTTAATATPTPTGAATTSDQQQQSG
GTPAMVAANLEVPTSSSSSAATKRQKDVDNKLEKCLNDMLKLKTSSNNNS
TSNSNNNAIMSHSLTGEHKDPKTALEGPTSSSSSSSSKYIGESQIPVPVQ
LYDPQKPLLQQQQQQQRICYPIGKSNSTSQLPMGGYQRLLQHQQQQHHQQ
QQQQHQEQQQYPQHKRPFLNWNSFACSAMNGASDPFMQQQHMPAHQQQQH
LPHKLQQSYSSSHVPKQAPKSGLAMFLQKNTNKENKFGQPMQQQPPGMMP
QMYGYQAPQQQSKIGYPRTGAPLTHSASFSSAQRPTALQFHQQHQQQQHL
QQQQQHPQQQQHQHSSFGVGMMSRNYYNMPKQPERKPLQTFDPYAYPKPN
QMQPVKYQQQQQHPHTQFQNASAGGGGGGAAGLQYDPNTNTQLFYASPAS
SSSNKQPQQPQQQQQQQQSQLQQSNSVIFNHSGQQHQPHQQQQNEMSKSA
LGLHFIETAKPVIQDDADGHLIYHTGDILHHRYKIMATLGEGTFGRVVKV
KDMERDYCMALKIIKNVEKYREAAKLEINALEKIAQKDPHCDHLCVKMID
WFDYHGHMCIVFEMLGLSVFDFLRENNYEPYPLDQVRHMAYQLCYSVKFL
HDNRLTHTDLKPENILFVDSDYTSHYNHKINREVRRVKNTDVRLIDFGSA
TFDHEHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGCILFELYLGITLF
QTHDNREHLAMMERILGQIPYRMARNHTLYSKTKTKYFYHGKLDWDEKSS
AGRYVRDHCKPLFLCQLSDSEDHCELFSLIKKMLEYEPSSRITLGEALHH
PFFDRLPPHHRVGEVSNKQPLSSGSSSRERSHSLSR*

LD31161.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
Doa-PY 1535 CG42320-PY 650..1535 1..886 4762 100 Plus
Doa-PP 2045 CG42320-PP 1160..2045 1..886 4762 100 Plus
Doa-PK 832 CG33553-PC 1..832 55..886 4477 100 Plus
Doa-PX 889 CG42320-PX 508..889 505..886 2067 99.2 Plus
Doa-PAA 398 CG42320-PAA 26..398 508..886 2009 98.4 Plus

LD31161.pep Sequence

Translation from 164 to 2662

> LD31161.pep
MVAANLEVPTSSSSSAATKRQKDVDNKLEKCLNDMLKLKTSSNNNSTSNS
NNNAIMSHSLTGEHKDPKTALEGPTSSSSSSSSKYIGESQIPVPVQLYDP
QKPLLQQQQQQQRICYPIGKSNSTSQLPMGGYQRLLQHQQQQHHQQQQQQ
HQEQQQYPQHKRPFLNWNSFACSAMNGASDPFMQQQHMPAHQQQQHLPHK
LQQSYSSSHVPKQAPKSGLAMFLQKNTNKENKFGQPMQQQPPGMMPQMYG
YQAPQQQSKIGYPRTGAPLTHSASFSSAQRPTALQFHQQHQQQQHLQQQQ
QHPQQQQHQHSSFGVGMMSRNYYNMPKQPERKPLQTFDPYAYPKPNQMQP
VKYQQQQQHPHTQFQNASAGGGGGGAAGLQYDPNTNTQLFYASPASSSSN
KQPQQPQQQQQQQQSQLQQSNSVIFNHSGQQHQPHQQQQNEMSKSALGLH
FIETAKPVIQDDADGHLIYHTGDILHHRYKIMATLGEGTFGRVVKVKDME
RDYCMALKIIKNVEKYREAAKLEINALEKIAQKDPHCDHLCVKMIDWFDY
HGHMCIVFEMLGLSVFDFLRENNYEPYPLDQVRHMAYQLCYSVKFLHDNR
LTHTDLKPENILFVDSDYTSHYNHKINREVRRVKNTDVRLIDFGSATFDH
EHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGCILFELYLGITLFQTHD
NREHLAMMERILGQIPYRMARNHTLYSKTKTKYFYHGKLDWDEKSSAGRY
VRDHCKPLFLCQLSDSEDHCELFSLIKKMLEYEPSSRITLGEALHHPFFD
RLPPHHRVGEVSNKQPLSSGSSSRERSHSLSR*

LD31161.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:21:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17020-PA 1260 GF17020-PA 888..1245 454..817 2005 96.2 Plus
Dana\GF19899-PA 468 GF19899-PA 1..468 35..461 1052 71.4 Plus
Dana\GF15600-PA 728 GF15600-PA 179..493 461..799 443 29 Plus
Dana\GF24757-PA 1332 GF24757-PA 156..501 462..798 442 30.3 Plus
Dana\GF20860-PA 1089 GF20860-PA 282..622 461..801 427 30 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11626-PA 2969 GG11626-PA 2597..2954 454..817 2068 98.4 Plus
Dere\GG11626-PA 2969 GG11626-PA 1247..1711 1..458 1538 87.4 Plus
Dere\GG10156-PA 718 GG10156-PA 176..490 461..799 469 29.6 Plus
Dere\GG14728-PA 1423 GG14728-PA 172..517 462..798 441 30.3 Plus
Dere\GG16414-PA 837 GG16414-PA 264..600 461..804 429 28.1 Plus
Dere\GG18154-PA 919 GG18154-PA 148..488 461..801 423 30 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13234-PA 2060 GH13234-PA 1245..2045 19..817 2936 75.3 Plus
Dgri\GH10596-PA 729 GH10596-PA 179..493 461..799 463 29.3 Plus
Dgri\GH16233-PA 1480 GH16233-PA 228..573 462..798 435 30.3 Plus
Dgri\GH23987-PA 892 GH23987-PA 400..730 461..798 432 28.7 Plus
Dgri\GH12565-PA 846 GH12565-PA 147..487 461..801 425 30 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:46
Subject Length Description Subject Range Query Range Score Percent Strand
Doa-PY 1535 CG42320-PY 704..1535 1..832 4477 100 Plus
Doa-PP 2045 CG42320-PP 1214..2045 1..832 4477 100 Plus
Doa-PK 832 CG33553-PC 1..832 1..832 4477 100 Plus
Doa-PR 1229 CG42320-PR 771..1229 372..832 2090 85.9 Plus
Doa-PX 889 CG42320-PX 508..889 451..832 2067 99.2 Plus
Doa-PZ 975 CG42320-PZ 596..975 453..832 2061 99.7 Plus
Doa-PV 511 CG42320-PV 89..511 398..832 2015 87.6 Plus
Doa-PU 580 CG42320-PU 158..580 398..832 2015 87.6 Plus
Doa-PT 580 CG42320-PT 158..580 398..832 2015 87.6 Plus
Doa-PS 511 CG42320-PS 89..511 398..832 2015 87.6 Plus
Doa-PN 580 CG33553-PF 158..580 398..832 2015 87.6 Plus
Doa-PL 983 CG33553-PE 561..983 398..832 2015 87.6 Plus
Doa-PJ 580 CG33553-PA 158..580 398..832 2015 87.6 Plus
Doa-PAA 398 CG42320-PAA 26..398 454..832 2009 98.4 Plus
Doa-PM 580 CG42320-PM 208..580 454..832 2009 98.4 Plus
Dyrk2-PE 722 CG4551-PE 180..527 461..831 451 28.7 Plus
Dyrk2-PD 722 CG4551-PD 180..527 461..831 451 28.7 Plus
Dyrk2-PA 722 CG4551-PA 180..527 461..831 451 28.7 Plus
Dyrk2-PB 722 CG4551-PB 180..527 461..831 451 28.7 Plus
Dyrk2-PC 722 CG4551-PC 180..527 461..831 451 28.7 Plus
Dyrk2-PF 746 CG4551-PF 180..527 461..831 451 28.7 Plus
Dyrk2-PG 757 CG4551-PG 215..562 461..831 451 28.7 Plus
Dyrk3-PE 828 CG40478-PE 258..594 461..804 429 28.7 Plus
Dyrk3-PC 828 CG40478-PC 258..594 461..804 429 28.7 Plus
Dyrk3-PA 828 CG40478-PA 258..594 461..804 429 28.7 Plus
Hipk-PA 1340 CG17090-PA 16..519 367..798 418 26.9 Plus
Hipk-PB 1340 CG17090-PB 16..519 367..798 418 26.9 Plus
Hipk-PC 1256 CG17090-PC 90..435 462..798 409 29.8 Plus
mnb-PG 604 CG42273-PG 146..511 461..822 402 29.4 Plus
mnb-PF 607 CG7826-PC 146..511 461..822 402 29.4 Plus
mnb-PI 743 CG42273-PI 285..650 461..822 402 29.4 Plus
mnb-PE 908 CG42273-PE 146..511 461..822 402 29.4 Plus
mnb-PH 1047 CG42273-PH 285..650 461..822 402 29.4 Plus
CG7028-PD 906 CG7028-PD 464..901 380..798 369 26 Plus
CG7028-PE 907 CG7028-PE 465..902 380..798 369 26 Plus
CG7028-PA 907 CG7028-PA 465..902 380..798 369 26 Plus
CG7028-PB 911 CG7028-PB 573..906 461..798 368 29.5 Plus
CG7028-PC 912 CG7028-PC 574..907 461..798 368 29.5 Plus
CG10543-PD 1631 CG10543-PD 1078..1434 40..419 264 28.9 Plus
CG10543-PE 1634 CG10543-PE 1081..1437 40..419 264 28.9 Plus
CG10543-PA 1634 CG10543-PA 1081..1437 40..419 264 28.9 Plus
CG10543-PF 1635 CG10543-PF 1082..1438 40..419 264 28.9 Plus
SRPK-PB 764 CG8174-PB 18..310 288..612 260 25.7 Plus
SRPK-PA 764 CG8174-PA 18..310 288..612 260 25.7 Plus
SRPK-PD 939 CG8174-PD 18..310 288..612 260 25.7 Plus
Smr-PF 3601 CG4013-PF 22..363 33..445 259 27.3 Plus
Smr-PE 3601 CG4013-PE 22..363 33..445 259 27.3 Plus
Smr-PD 3601 CG4013-PD 22..363 33..445 259 27.3 Plus
mam-PD 1594 CG8118-PD 634..979 129..435 255 31.1 Plus
mam-PB 1594 CG8118-PB 634..979 129..435 255 31.1 Plus
mam-PA 1594 CG8118-PA 634..979 129..435 255 31.1 Plus
CG10543-PD 1631 CG10543-PD 1165..1554 48..417 250 27.1 Plus
CG10543-PE 1634 CG10543-PE 1168..1557 48..417 250 27.1 Plus
CG10543-PA 1634 CG10543-PA 1168..1557 48..417 250 27.1 Plus
CG10543-PF 1635 CG10543-PF 1169..1558 48..417 250 27.1 Plus
Smr-PF 3601 CG4013-PF 122..574 46..441 235 27 Plus
Smr-PE 3601 CG4013-PE 122..574 46..441 235 27 Plus
Smr-PD 3601 CG4013-PD 122..574 46..441 235 27 Plus
SRPK-PB 764 CG8174-PB 600..762 635..798 198 29.4 Plus
SRPK-PA 764 CG8174-PA 600..762 635..798 198 29.4 Plus
SRPK-PD 939 CG8174-PD 600..762 635..798 198 29.4 Plus
mam-PD 1594 CG8118-PD 757..1062 133..446 197 27.5 Plus
mam-PB 1594 CG8118-PB 757..1062 133..446 197 27.5 Plus
mam-PA 1594 CG8118-PA 757..1062 133..446 197 27.5 Plus
mam-PD 1594 CG8118-PD 755..1047 101..439 194 28.1 Plus
mam-PB 1594 CG8118-PB 755..1047 101..439 194 28.1 Plus
mam-PA 1594 CG8118-PA 755..1047 101..439 194 28.1 Plus
CG10543-PD 1631 CG10543-PD 1104..1340 235..438 188 30 Plus
CG10543-PE 1634 CG10543-PE 1107..1343 235..438 188 30 Plus
CG10543-PA 1634 CG10543-PA 1107..1343 235..438 188 30 Plus
CG10543-PF 1635 CG10543-PF 1108..1344 235..438 188 30 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22371-PA 2050 GI22371-PA 1230..2035 19..817 2956 75.6 Plus
Dmoj\GI17385-PA 755 GI17385-PA 185..499 461..799 460 29.3 Plus
Dmoj\GI14115-PA 636 GI14115-PA 260..596 461..804 443 29.1 Plus
Dmoj\GI16660-PA 1681 GI16660-PA 176..521 462..798 437 30.3 Plus
Dmoj\GI16344-PA 829 GI16344-PA 154..494 461..801 423 29.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24199-PA 381 GL24199-PA 8..381 453..832 2028 96.1 Plus
Dper\GL21056-PA 729 GL21056-PA 177..491 461..799 464 29.3 Plus
Dper\GL18373-PA 632 GL18373-PA 44..380 461..804 435 28.8 Plus
Dper\GL14559-PA 868 GL14559-PA 139..479 461..801 424 30 Plus
Dper\GL16105-PA 909 GL16105-PA 571..905 461..799 373 29.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30162-PG 899 GA30162-PG 28..884 19..817 2968 76.4 Plus
Dpse\GA30162-PE 2084 GA30162-PE 1240..2069 19..817 2950 76.5 Plus
Dpse\GA30162-PH 1258 GA30162-PH 880..1243 454..817 2054 97.8 Plus
Dpse\GA30162-PA 1014 GA30162-PA 631..999 449..817 2044 96.7 Plus
Dpse\GA30162-PF 608 GA30162-PF 236..608 454..832 2041 96.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12747-PA 2050 GM12747-PA 1232..2050 1..832 4307 95.4 Plus
Dsec\GM14344-PA 1414 GM14344-PA 196..541 462..798 438 30.3 Plus
Dsec\GM13004-PA 838 GM13004-PA 265..601 461..804 427 28.1 Plus
Dsec\GM22846-PA 607 GM22846-PA 146..486 461..801 408 29.7 Plus
Dsec\GM14885-PA 695 GM14885-PA 199..467 507..799 376 28.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21393-PA 493 GD21393-PA 1..456 1..454 2179 94.3 Plus
Dsim\GD21389-PA 570 GD21389-PA 219..570 475..832 1947 97.2 Plus
Dsim\GD22014-PA 720 GD22014-PA 178..492 461..799 463 29.1 Plus
Dsim\GD11020-PA 1744 GD11020-PA 167..512 462..798 430 30.1 Plus
Dsim\GD15658-PA 911 GD15658-PA 146..486 461..801 422 30 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24405-PA 2597 GJ24405-PA 2194..2582 426..817 2043 91.3 Plus
Dvir\GJ24405-PA 2597 GJ24405-PA 1228..1672 19..462 926 60.5 Plus
Dvir\GJ18062-PA 730 GJ18062-PA 182..496 461..799 463 29.3 Plus
Dvir\GJ14450-PA 1294 GJ14450-PA 721..1057 461..804 447 29.1 Plus
Dvir\GJ12912-PA 1546 GJ12912-PA 182..527 462..798 437 30.3 Plus
Dvir\GJ11137-PA 594 GJ11137-PA 333..568 461..713 400 31.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22547-PA 2101 GK22547-PA 1253..2086 18..817 3011 75.6 Plus
Dwil\GK15100-PA 724 GK15100-PA 182..496 461..799 464 29.3 Plus
Dwil\GK13652-PA 662 GK13652-PA 236..557 461..804 443 29.4 Plus
Dwil\GK16639-PA 1297 GK16639-PA 82..427 462..798 441 30.3 Plus
Dwil\GK10086-PA 893 GK10086-PA 145..485 461..801 428 30 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23814-PA 853 GE23814-PA 4..853 2..832 4230 94.7 Plus
Dyak\GE25082-PA 720 GE25082-PA 178..492 461..799 464 29.3 Plus
Dyak\GE21090-PA 1423 GE21090-PA 169..514 462..798 440 30.3 Plus
Dyak\GE14483-PA 831 GE14483-PA 259..595 461..804 426 28.1 Plus
Dyak\GE15563-PA 925 GE15563-PA 148..488 461..801 422 30 Plus