Clone LD31163 Report

Search the DGRC for LD31163

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:311
Well:63
Vector:pOT2
Associated Gene/Transcriptssp-RA
Protein status:LD31163.pep: gold
Preliminary Size:1487
Sequenced Size:1389

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17153 2001-01-01 Release 2 assignment
CG17153 2001-11-09 Blastp of sequenced clone
CG17153 2003-01-01 Sim4 clustering to Release 3
CG17153 2008-04-29 Release 5.5 accounting
CG17153 2008-08-15 Release 5.9 accounting
CG17153 2008-12-18 5.12 accounting

Clone Sequence Records

LD31163.complete Sequence

1389 bp (1389 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069574

> LD31163.complete
ACATGATTGAGGCCCGCACGATGCAGGACGTATCAAAATTCGAATCCAAC
CAGGTGATCTCGGCGAAGGTGCTCCGCGGCGAGTACCGGCTACTACGACG
CAAGCAGCGCGGCTCCGTGTGGAAGGTGTATCGGGAAATCGTGCGCACCG
ATGGTGCCATAATCAATGGACTCTACTTCTGCACGGGCTGCAAGCGCGTC
ATGCGATCCTTCAACACGTCCAATCTGCGCACCCACAAGTGCCATGTGGA
CTACCTGCGTACCGAGGAACTGTGCGAGGAGGGGATCGCGGAAATCCATC
CCCCTAAACTAGACGATTCGTTGGAGCGCCGCCTGAGCTGGAACTCCTTT
CAGCCGTCCGAGTGGTCATTCCACGCGGTCGAACTGCTGCTCGAGCTTTG
GGCAAGGCACTGCGTCGATTTGCGAGACTCACGCAAGCGGGTCCAGGTTA
TCTGGAAAATGACGGGCGAGATGAAGTCACTGGGTTTCACGTTCACGGAG
ATAAAGAACAAAATTGATGACATGGGCCAACAGTATCGGCGAGAATCGCA
CATGGAAAAGACAACTGGACACAAATCCCAGTGGGAATACTTCGAGACCA
TGAAGATGATATTTAGTTCCGATCGTAACATAATTGACAATATGCCTCTG
GATAAGTCTGGAAGTGCACCCAATACGACCAGCGAACACAATTCATTTGG
CAGTCAACTTGACGAACCATTGATAGATAGGAACTACTTAAGGTCCCAAA
AAGTACACCCTGGAGAAGGGGATAGCTTCGATATGAACGAATATGCGGAT
GAAGCACAAGAAGACGTGGATGAACTGCGTATTCTGAAGGATAACATAAT
CAGGGAAATCGAAGAGTCGTCCACAGTTCATTCCCAGGAAAACTATGAAG
ACGAGCTCGATCAACAGAATTCCAAGACCGAGGACATGAAAATTGCTAAG
CGTCAAAGAGCTGCCAGAATTATGGAAATAGAGGAGGAAAAGCTGGTCAT
AGAGAGGAAAAAATGCAAACTGATGAAATTTTTCGTGCGAGAGATGTCGT
CGTTTCATAAGGACTTCATGGATCTTCTATCTAATCCCAAAGGCGGCGCA
CATGCATAAATACCTGTTCGCGATTTGAGTGATTGCACAATAAAGTTCAT
TTCCACCGTTATTAACGTAAACTTAAAAGGCATCACATTCAACGAATTTT
TAAAAAAATCATGTAACAGAAAGTTTAAATATCTCATTTCGGCAGTCACT
CAATTTTTTATTTCAAATACGAATAAGTATAAAATGATTTGTGATTCATT
GCGTTTTATTACAATTCAGCAGATATGTTTAAGATTTAATAAAATGAAGT
CGTAATAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAA

LD31163.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG17153-RA 1504 CG17153-RA 129..1485 1..1357 6785 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 12109724..12110543 538..1357 4100 100 Plus
chr3L 24539361 chr3L 12109066..12109380 1..315 1575 100 Plus
chr3L 24539361 chr3L 12109441..12109665 315..539 1125 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:24:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12118971..12119790 538..1357 4100 100 Plus
3L 28110227 3L 12118313..12118627 1..315 1575 100 Plus
3L 28110227 3L 12118688..12118912 315..539 1125 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 12112071..12112890 538..1357 4100 100 Plus
3L 28103327 3L 12111413..12111727 1..315 1575 100 Plus
3L 28103327 3L 12111788..12112012 315..539 1125 100 Plus
Blast to na_te.dros performed 2019-03-16 10:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
Tc1 1666 Tc1 TC1 1666bp 1503..1563 1224..1285 118 67.7 Plus

LD31163.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:48:51 Download gff for LD31163.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 12109066..12109379 1..314 100 -> Plus
chr3L 12109441..12109664 315..538 100 -> Plus
chr3L 12109725..12110543 539..1357 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:12:21 Download gff for LD31163.complete
Subject Subject Range Query Range Percent Splice Strand
CG17153-RA 1..1107 3..1109 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:32:52 Download gff for LD31163.complete
Subject Subject Range Query Range Percent Splice Strand
ssp-RA 1..1107 3..1109 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:26:08 Download gff for LD31163.complete
Subject Subject Range Query Range Percent Splice Strand
ssp-RA 1..1107 3..1109 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:00:28 Download gff for LD31163.complete
Subject Subject Range Query Range Percent Splice Strand
CG17153-RA 1..1107 3..1109 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:17:24 Download gff for LD31163.complete
Subject Subject Range Query Range Percent Splice Strand
ssp-RA 1..1107 3..1109 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:11:45 Download gff for LD31163.complete
Subject Subject Range Query Range Percent Splice Strand
CG17153-RA 71..1429 1..1359 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:32:52 Download gff for LD31163.complete
Subject Subject Range Query Range Percent Splice Strand
ssp-RA 71..1429 1..1359 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:26:08 Download gff for LD31163.complete
Subject Subject Range Query Range Percent Splice Strand
ssp-RA 57..1412 1..1356 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:00:29 Download gff for LD31163.complete
Subject Subject Range Query Range Percent Splice Strand
CG17153-RA 71..1429 1..1359 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:17:24 Download gff for LD31163.complete
Subject Subject Range Query Range Percent Splice Strand
ssp-RA 57..1412 1..1356 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:48:51 Download gff for LD31163.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12118313..12118626 1..314 100 -> Plus
3L 12118688..12118911 315..538 100 -> Plus
3L 12118972..12119790 539..1357 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:48:51 Download gff for LD31163.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12118313..12118626 1..314 100 -> Plus
3L 12118688..12118911 315..538 100 -> Plus
3L 12118972..12119790 539..1357 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:48:51 Download gff for LD31163.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12118313..12118626 1..314 100 -> Plus
3L 12118688..12118911 315..538 100 -> Plus
3L 12118972..12119790 539..1357 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:26:08 Download gff for LD31163.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12111788..12112011 315..538 100 -> Plus
arm_3L 12111413..12111726 1..314 100 -> Plus
arm_3L 12112072..12112890 539..1357 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:37:11 Download gff for LD31163.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12111413..12111726 1..314 100 -> Plus
3L 12111788..12112011 315..538 100 -> Plus
3L 12112072..12112890 539..1357 100   Plus

LD31163.pep Sequence

Translation from 2 to 1108

> LD31163.pep
MIEARTMQDVSKFESNQVISAKVLRGEYRLLRRKQRGSVWKVYREIVRTD
GAIINGLYFCTGCKRVMRSFNTSNLRTHKCHVDYLRTEELCEEGIAEIHP
PKLDDSLERRLSWNSFQPSEWSFHAVELLLELWARHCVDLRDSRKRVQVI
WKMTGEMKSLGFTFTEIKNKIDDMGQQYRRESHMEKTTGHKSQWEYFETM
KMIFSSDRNIIDNMPLDKSGSAPNTTSEHNSFGSQLDEPLIDRNYLRSQK
VHPGEGDSFDMNEYADEAQEDVDELRILKDNIIREIEESSTVHSQENYED
ELDQQNSKTEDMKIAKRQRAARIMEIEEEKLVIERKKCKLMKFFVREMSS
FHKDFMDLLSNPKGGAHA*

LD31163.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20046-PA 338 GF20046-PA 6..331 14..355 526 36.2 Plus
Dana\GF23586-PA 418 GF23586-PA 167..413 121..359 238 27.5 Plus
Dana\GF23587-PA 280 GF23587-PA 20..89 19..86 216 57.1 Plus
Dana\GF10849-PA 217 GF10849-PA 4..90 12..97 172 40.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15557-PA 367 GG15557-PA 1..367 1..368 1735 87.2 Plus
Dere\GG15556-PA 385 GG15556-PA 155..380 121..359 223 29.4 Plus
Dere\GG15558-PA 299 GG15558-PA 28..97 19..86 213 55.7 Plus
Dere\GG13372-PA 213 GG13372-PA 8..79 19..86 158 42.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14652-PA 313 GH14652-PA 15..89 14..86 215 54.7 Plus
Dgri\GH16915-PA 252 GH16915-PA 8..94 19..102 172 41.6 Plus
Dgri\GH14651-PA 410 GH14651-PA 184..267 120..204 154 35.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:54
Subject Length Description Subject Range Query Range Score Percent Strand
ssp-PA 368 CG17153-PA 1..368 1..368 1931 100 Plus
vers-PA 391 CG6801-PA 154..388 121..361 270 29.4 Plus
CG11560-PA 303 CG11560-PA 23..97 14..86 210 54.7 Plus
CG11560-PB 307 CG11560-PB 23..97 14..86 210 54.7 Plus
CG34116-PA 211 CG34116-PA 8..84 19..91 156 39.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11637-PA 274 GI11637-PA 15..89 14..86 220 56 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:24:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15728-PA 391 GL15728-PA 23..389 14..361 503 34.5 Plus
Dper\GL15726-PA 268 GL15726-PA 62..262 121..359 232 28 Plus
Dper\GL15729-PA 290 GL15729-PA 14..88 14..86 216 56 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:24:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23780-PA 378 GA23780-PA 19..376 14..361 506 34.5 Plus
Dpse\GA23779-PA 273 GA23779-PA 70..267 121..359 224 29.9 Plus
Dpse\GA23781-PA 290 GA23781-PA 14..88 14..86 216 56 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:24:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25325-PA 368 GM25325-PA 1..368 1..368 1902 94.8 Plus
Dsec\GM25326-PA 298 GM25326-PA 28..97 19..86 218 57.1 Plus
Dsec\GM25324-PA 390 GM25324-PA 154..386 121..359 214 28 Plus
Dsec\GM16254-PA 211 GM16254-PA 8..79 19..86 157 42.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14356-PA 298 GD14356-PA 28..97 19..86 219 57.1 Plus
Dsim\GD14355-PA 260 GD14355-PA 154..243 121..210 165 33.3 Plus
Dsim\GD12250-PA 211 GD12250-PA 8..79 19..86 156 42.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11319-PA 281 GJ11319-PA 15..89 14..86 216 54.7 Plus
Dvir\GJ11318-PA 342 GJ11318-PA 133..342 120..363 176 26 Plus
Dvir\GJ14005-PA 256 GJ14005-PA 8..124 19..143 165 35.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16966-PA 344 GK16966-PA 15..89 14..86 232 57.3 Plus
Dwil\GK16703-PA 264 GK16703-PA 4..88 12..95 164 39.3 Plus
Dwil\GK16965-PA 462 GK16965-PA 112..259 82..238 156 29.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21881-PA 368 GE21881-PA 1..368 1..368 1680 85.1 Plus
Dyak\GE21882-PA 305 GE21882-PA 28..105 19..94 219 53.8 Plus
Dyak\GE21880-PA 383 GE21880-PA 151..234 121..204 163 34.5 Plus
Dyak\GE22465-PA 213 GE22465-PA 8..79 19..86 158 42.5 Plus

LD31163.hyp Sequence

Translation from 2 to 1108

> LD31163.hyp
MIEARTMQDVSKFESNQVISAKVLRGEYRLLRRKQRGSVWKVYREIVRTD
GAIINGLYFCTGCKRVMRSFNTSNLRTHKCHVDYLRTEELCEEGIAEIHP
PKLDDSLERRLSWNSFQPSEWSFHAVELLLELWARHCVDLRDSRKRVQVI
WKMTGEMKSLGFTFTEIKNKIDDMGQQYRRESHMEKTTGHKSQWEYFETM
KMIFSSDRNIIDNMPLDKSGSAPNTTSEHNSFGSQLDEPLIDRNYLRSQK
VHPGEGDSFDMNEYADEAQEDVDELRILKDNIIREIEESSTVHSQENYED
ELDQQNSKTEDMKIAKRQRAARIMEIEEEKLVIERKKCKLMKFFVREMSS
FHKDFMDLLSNPKGGAHA*

LD31163.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
ssp-PA 368 CG17153-PA 1..368 1..368 1931 100 Plus
l(3)j2D3-PA 391 CG6801-PA 154..388 121..361 270 29.4 Plus
CG11560-PA 303 CG11560-PA 23..97 14..86 210 54.7 Plus
CG34116-PA 211 CG34116-PA 8..84 19..91 156 39.7 Plus