Clone LD31195 Report

Search the DGRC for LD31195

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:311
Well:95
Vector:pOT2
Associated Gene/TranscriptSpred-RB
Protein status:LD31195.pep: gold
Sequenced Size:2208

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Spred 2010-12-02 CDS novel splice

Clone Sequence Records

LD31195.complete Sequence

2208 bp assembled on 2011-02-17

GenBank Submission: BT126047.1

> LD31195.complete
TCTTTATGCTTTAATCATGGTGTATTTCGCCACCAACAACAACAACACCG
ACACTACACGCTGCTATATTAGAATCTTTCTGATAACGAACCATGACAGA
AGGACATGAAAGCGACTTCTTAGTAACAGTACGCGCACAGGTAATGACCA
GAGACGAGAGCACCGAGGGCTGGCTTCCGCTGGCCGGGGGTGGCCTGGCC
AATGTTTCGATCCGGAAGCGGGCTAGGCTATCCCCATTGGCATCGGGTCA
TGACTACATCATCTACGGGCAGAGAATATCCGATCAGAGCGTCATCTTGA
GCTGTGTGATCAATCGTGATCTGAAGTATTACAAAGTAATGCCTACATTT
CATCATTGGCGCGCAGGGAAGCAGCGGAATGGACTCACATTTCAAACGGC
CGCCGATGCGCGAGCCTTTGACAAGGGCGTCCTGCGCGCCTACAACGAGC
TGATCGATGATGATGTATTCATGACCCTGGACTTACCTGTGGAGAGCGAG
AGTTTACAAAAGATCCATTCAAGCCCCGAGGGCAGCGAGAAAAGTCACAA
GAGCGTCAGCAACAACTCCGACTCGGAGAAGCTGCCTCCGCCGCCCATTC
ACTACATATCCACGGACAAAACATCGGCCACCACGTCGCCGCCAGACGCA
CCGCCCGCTTCTGCTGCTCCATCGCCGGCGACGGCCGGCCAGATAGCGGC
CAGTGAGAACTACTCGTACGTGACGCTGACGGCGGTGCACCACGACTACA
ACTATCCGGTGGTGGACCAGCCGGTGGGGGCGCAGGTGCTCAATGCTCGC
AGGGAGTCGATCAGTGCACTAAAGAAGCGCAACGCTCTGGAGGCAGCGCA
GGCGATGGCGGCGGCTCAGACGGCGGCGGGTGGTGGACTGGCCTGTCGCG
ACGGCGGATCGGGAAAGCCACTGCACAAGCCAAACGTATCCGACATACTG
AAGAAGGAGACGCGCCTGCGATGCCGCTACTGCCACGAGCTGTACAGCGA
GGACTTCAATCGGCGGGGCGCCTGCGAATATGCCCCGGATGCGTTTCGCA
GCGGCTACGAGTGCATCTCTGGGATGGGCTGTGCCCGTTGCATGATCTAC
CACTGCATGAGCGACGCCGAGGGCGAGACGGCCCAGCATCCGTGCGACTG
CAGCGCCAGCGAGGCCGGCTGCAGCAAGCGCTGGCTGGGCCTGGCGATCC
TCTCGTTGTTCGTGCCCTGCCTGTGGTGCTATCCGCCGCTCCGCGCCTGC
CACTTGGCCGGCATCCACTGCGGCCTCTGCGGCGGGCAGCACAAGCCGCA
TGTCTGACATTTGGAGGCCCGCTTGCAAGGACAGCACGATGATGACCCCA
GGCCCAGAAGCGAATTCCACTACCACCACTCCGAGCAGAGCATAATGAAC
AGCGCCAAGCGTCCGTGGGGCGCCAAGCAGAAGCAGTCGCAGCAATCACA
GCAATCGCAGCGTCATTTTTACAACTGGGAGCTGTCGCACAGCTTGGGTG
CTCCCCAGCATCAGACTCCGCCGTATTTAATGCAATCAACTGGCAGGAAG
GCACCGCAGAACGATTACGGACGCTTGCTGTTCTAGGCTTTATCCATGAT
GACAGCCTGAGGACTCATTTTTACAAACTGATTACCAAGAAGTACTGATT
ATTTCACCAGATCTACGGTATCTTAAAGATATCTAAAAGTGGACAAGGAA
ATGTTTTTCTGATAAATGGCAAGAAAACAATGTTTTCACACTGTTGAGAT
GAAAAAATCGTGTCGATGCAAAAGCACAGCTTTTTCAAATCGGGTGAAAG
AAGAATGCGTAAGAAGCAATTCAGCTTGAAAATCAGTTTGCCAAAATGGG
TCTGGGGTTCGATTTTAGTATCATTTCGGTATACTCCATTTGAATTGCCA
TAATTAATTGTATATACAAAAGAGCAGGAAGGATTATGTATCTAATTTTA
ATATACTTTTAAAATTGTAACTTATGTTTAGTGCTCTCGCTTAATTATAG
TTTTGTAAAAACGGGCTATTTGTTTTTATTCGTAACTGAACACACATTTT
TTTGAAAAATCAAAATATTATACAATGATTGTTTTAGTTTTAGTTGTTTA
GGGTTTTTTGCTATTTTACACTTGCTTGTTTACAATTCGAAATTGGAGAA
CAGTATTAAAAGGCCAAGGCGAAGGCAAAGGCGAAACGAGAAAAAAAAAA
AAAAAAAA

LD31195.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 10648442..10650082 2190..550 8190 99.9 Minus
chr2R 21145070 chr2R 10651344..10651525 292..111 895 99.5 Minus
chr2R 21145070 chr2R 10651117..10651285 459..291 830 99.4 Minus
chr2R 21145070 chr2R 10655299..10655410 112..1 560 100 Minus
chr2R 21145070 chr2R 10650205..10650299 549..455 460 98.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14761154..14762796 2192..550 8215 100 Minus
2R 25286936 2R 14764058..14764239 292..111 910 100 Minus
2R 25286936 2R 14763831..14763999 459..291 845 100 Minus
2R 25286936 2R 14768004..14768115 112..1 560 100 Minus
2R 25286936 2R 14762919..14763013 549..455 460 98.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 14762353..14763995 2192..550 8215 100 Minus
2R 25260384 2R 14765257..14765438 292..111 910 100 Minus
2R 25260384 2R 14765030..14765198 459..291 845 100 Minus
2R 25260384 2R 14769203..14769314 112..1 560 100 Minus
2R 25260384 2R 14764118..14764212 549..455 460 98.9 Minus
Blast to na_te.dros performed on 2019-03-17 01:41:15 has no hits.

LD31195.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:42:06 Download gff for LD31195.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 10648442..10650082 550..2190 99 <- Minus
chr2R 10650205..10650294 460..549 100 <- Minus
chr2R 10651117..10651285 291..459 99 <- Minus
chr2R 10651346..10651523 113..290 99 <- Minus
chr2R 10655299..10655410 1..112 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-02-17 12:01:54 Download gff for LD31195.complete
Subject Subject Range Query Range Percent Splice Strand
Spred-RA 1..367 93..459 100 -> Plus
Spred-RA 434..1281 460..1307 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:48:42 Download gff for LD31195.complete
Subject Subject Range Query Range Percent Splice Strand
Spred-RB 1..1215 93..1307 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 18:07:08 Download gff for LD31195.complete
Subject Subject Range Query Range Percent Splice Strand
Spred-RB 1..1215 93..1307 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 12:01:51 Download gff for LD31195.complete
Subject Subject Range Query Range Percent Splice Strand
Spred-RA 401..859 1..459 100 -> Plus
Spred-RA 926..2656 460..2190 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:48:42 Download gff for LD31195.complete
Subject Subject Range Query Range Percent Splice Strand
Spred-RB 336..2525 1..2190 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 18:07:08 Download gff for LD31195.complete
Subject Subject Range Query Range Percent Splice Strand
Spred-RB 336..2525 1..2190 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:42:06 Download gff for LD31195.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14761156..14762796 550..2190 100 <- Minus
2R 14762919..14763008 460..549 100 <- Minus
2R 14763831..14763999 291..459 100 <- Minus
2R 14764060..14764237 113..290 100 <- Minus
2R 14768004..14768115 1..112 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:42:06 Download gff for LD31195.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14761156..14762796 550..2190 100 <- Minus
2R 14762919..14763008 460..549 100 <- Minus
2R 14763831..14763999 291..459 100 <- Minus
2R 14764060..14764237 113..290 100 <- Minus
2R 14768004..14768115 1..112 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:42:06 Download gff for LD31195.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14761156..14762796 550..2190 100 <- Minus
2R 14762919..14763008 460..549 100 <- Minus
2R 14763831..14763999 291..459 100 <- Minus
2R 14764060..14764237 113..290 100 <- Minus
2R 14768004..14768115 1..112 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:48:42 Download gff for LD31195.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10648661..10650301 550..2190 100 <- Minus
arm_2R 10650424..10650513 460..549 100 <- Minus
arm_2R 10651336..10651504 291..459 100 <- Minus
arm_2R 10651565..10651742 113..290 100 <- Minus
arm_2R 10655509..10655620 1..112 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:58:39 Download gff for LD31195.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14762355..14763995 550..2190 100 <- Minus
2R 14764118..14764207 460..549 100 <- Minus
2R 14765030..14765198 291..459 100 <- Minus
2R 14765259..14765436 113..290 100 <- Minus
2R 14769203..14769314 1..112 100   Minus

LD31195.hyp Sequence

Translation from 92 to 1306

> LD31195.hyp
MTEGHESDFLVTVRAQVMTRDESTEGWLPLAGGGLANVSIRKRARLSPLA
SGHDYIIYGQRISDQSVILSCVINRDLKYYKVMPTFHHWRAGKQRNGLTF
QTAADARAFDKGVLRAYNELIDDDVFMTLDLPVESESLQKIHSSPEGSEK
SHKSVSNNSDSEKLPPPPIHYISTDKTSATTSPPDAPPASAAPSPATAGQ
IAASENYSYVTLTAVHHDYNYPVVDQPVGAQVLNARRESISALKKRNALE
AAQAMAAAQTAAGGGLACRDGGSGKPLHKPNVSDILKKETRLRCRYCHEL
YSEDFNRRGACEYAPDAFRSGYECISGMGCARCMIYHCMSDAEGETAQHP
CDCSASEAGCSKRWLGLAILSLFVPCLWCYPPLRACHLAGIHCGLCGGQH
KPHV*

LD31195.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
Spred-PB 404 CG10155-PB 1..404 1..404 2166 100 Plus
Spred-PA 426 CG10155-PA 1..426 1..404 2133 94.8 Plus
Spred-PC 519 CG10155-PC 1..426 1..404 2133 94.8 Plus

LD31195.pep Sequence

Translation from 92 to 1306

> LD31195.pep
MTEGHESDFLVTVRAQVMTRDESTEGWLPLAGGGLANVSIRKRARLSPLA
SGHDYIIYGQRISDQSVILSCVINRDLKYYKVMPTFHHWRAGKQRNGLTF
QTAADARAFDKGVLRAYNELIDDDVFMTLDLPVESESLQKIHSSPEGSEK
SHKSVSNNSDSEKLPPPPIHYISTDKTSATTSPPDAPPASAAPSPATAGQ
IAASENYSYVTLTAVHHDYNYPVVDQPVGAQVLNARRESISALKKRNALE
AAQAMAAAQTAAGGGLACRDGGSGKPLHKPNVSDILKKETRLRCRYCHEL
YSEDFNRRGACEYAPDAFRSGYECISGMGCARCMIYHCMSDAEGETAQHP
CDCSASEAGCSKRWLGLAILSLFVPCLWCYPPLRACHLAGIHCGLCGGQH
KPHV*

LD31195.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13513-PA 529 GF13513-PA 1..429 1..403 1794 90.2 Plus
Dana\GF11575-PA 818 GF11575-PA 147..252 10..120 159 29.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22399-PA 426 GG22399-PA 1..426 1..404 2127 94.1 Plus
Dere\GG21948-PA 834 GG21948-PA 153..258 10..120 158 29.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21145-PA 514 GH21145-PA 1..411 1..390 1716 81 Plus
Dgri\GH22638-PA 830 GH22638-PA 154..259 10..120 161 29.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
Spred-PB 404 CG10155-PB 1..404 1..404 2166 100 Plus
Spred-PC 519 CG10155-PC 1..426 1..404 2133 94.8 Plus
Spred-PA 426 CG10155-PA 1..426 1..404 2133 94.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18744-PA 434 GI18744-PA 1..434 1..404 1775 81.6 Plus
Dmoj\GI18914-PA 553 GI18914-PA 167..272 10..120 163 29.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10623-PA 421 GL10623-PA 1..421 1..404 1744 84.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10117-PA 421 GA10117-PA 1..421 1..404 1749 84.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20184-PA 426 GM20184-PA 1..426 1..404 2124 94.1 Plus
Dsec\GM21935-PA 819 GM21935-PA 150..255 10..120 158 29.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25657-PA 426 GD25657-PA 1..426 1..404 2140 94.8 Plus
Dsim\GD11431-PA 684 GD11431-PA 6..111 10..120 157 29.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21766-PA 431 GJ21766-PA 1..431 1..404 1786 82.4 Plus
Dvir\GJ19769-PA 816 GJ19769-PA 154..259 10..120 162 29.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19514-PA 428 GK19514-PA 1..428 1..404 1695 81.9 Plus
Dwil\GK17966-PA 888 GK17966-PA 177..282 10..120 158 29.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12288-PA 426 GE12288-PA 1..426 1..404 2128 94.1 Plus
Dyak\GE12021-PA 840 GE12021-PA 157..262 10..120 158 29.5 Plus