Clone LD31216 Report

Search the DGRC for LD31216

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:312
Well:16
Vector:pOT2
Associated Gene/TranscriptCG12007-RA
Protein status:LD31216.pep: gold
Preliminary Size:1988
Sequenced Size:1822

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12007 2001-09-19 Blastp of sequenced clone
CG12007 2003-01-01 Sim4 clustering to Release 3
CG12007 2008-04-29 Release 5.5 accounting
CG12007 2008-08-15 Release 5.9 accounting
CG12007 2008-12-18 5.12 accounting

Clone Sequence Records

LD31216.complete Sequence

1822 bp (1822 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058618

> LD31216.complete
AATATTGGACTTTAATTCAATTCAGGGCAATGCACGGACGCGTAAAAGTG
AGGACCACGGAGGAGGAGCGCGAGCGGAAGAAGAAGGAGCAGGCTCTGAA
AGTCCGGGCCTACCGTGCAGCCATGGGAAGGATTCAGAAGAAGAGGGAGG
CGGGTGAGCTGGACAACGAAATGCTCAGCCTGACAGTTCAGATCTTGCTG
CGGAATCCGGATGTCAGCATGCTGTGGAACATCCGCAGGGAGTGCGTGCT
GGAGAAGCTGTTCAGGCTAAAGGAAGAGGAGGCCACGTGCGAGACGCCCA
GCGAGGAGAAGCCAGAGAAGGAAAACCAAACCGGTGAGAATAAGCCGAGT
GAAAAGAAGGCCGCTGGCGAGGACAAGGCCCATTCCATTTTCACCTGCGA
ACTGGACCTCACCGAGCAGTGCCTAATGGTCAACCCGAAGTCCTACAACG
CCTGGCACCACCGCTGCTGGACCCTGGAACAGAATCCCAGGGCGGACTGG
CAGCAGGAGGTGAAACTGTGCAACAAGTACCTCAAATTCGACGAGCGCAA
CTTCCACACCTGGGACTACAGGCGCTATGTGACCGGCAAGGCCATGGTGC
CGGCCACCCAGGAGCTGGACTTCTGCACCGAGAAGATCAGGGCTAACTTC
TCCAACTACTCCAGCTGGCACCACCGCAGTCTCCTGCTTCCGGAGCTCTA
CCCCAACCAGCAGAGAGACCGGCCCATGAGTGAGGAGAAGTTGCAGAAGG
AGCTTGAAATGGTGCTGACCGCTGCTTTCACGGATCCTAACGACAGCAGT
GCTTGGTTCTACCAGCGCTGGTTGCTGGGCAGCGGCGCCCAGTTGGATCG
GGCTCCAAGGATAGCTGCTTTTCGACTGGAGTCACATGGAGCAGTCCTCG
CCCTTGACAAGCCCTACCCAGATATAAAGCAATTGAAGACTGAGCTAGTT
GGGGGAGGACAAACGATTTTACTGGAGTTCTGGCTACCAGTGGACAAGCG
TGGAACCAGTTGGAAGTGTCAGCAGAACTTCGATTACCAAAGAAACTCAG
CTTACTCCCTTAGGCTCTCCGATCAGAAGGTTGACCTCTCGCCTCTGTCT
GGCTCGGAAAACGGAGCCTATTACATTGCGCCGCCACACGGCACTACGAG
TTGCAGCAAGGATCTCCTGGCGGAGCTGCAAACGCAGCTGCAATCCTGCC
TAGATCTTCTGGAGTTTGAGCCGGACAGCAAGTGGACCCTACTAACAAGT
GCCCTTCTAATGCGTGCTATCGATTTCTCAGCCAATCACGAAACGAGCTT
GGCGCACTTGGCCAAGTTGGAAAAGGTGGATTTTTTAAGAGAGGGTTACT
ACAAGGACCTCGCTGCTAGGTGGACCTTGGAGTGGGAGCTTGCCAAGTGG
CCCCAATCGGCCGACTTTCCCAAAAGATTTGACATAGCGAATGCCGTACT
GCTGGAATCGCTTCCTTATGATCAATACTTAGTCATCGCTGATGAAATAA
CCTTGCCCAACAAACTGCGAGACAAATTGGGGGAATCAGTGCCCAAAACG
TTTGCAGACTTGAAGTTGCAGTCATAGACCATTGGTGAATTGGTTTCGAT
AAGATAAGCCATATTTTACATTTGGTGCTGAACCGTTTTTGGTGATGTTG
AAAGCCTTGAAAGAAGTGCAATCAATCGCTAAATTCCATTTTGAAATTAT
TCCTATTTATTCCTTGTACGAGTATGAGAAGAAATGTTATGTACATTACT
AATACATATTTTTACTCTCTTTGTATATCGATGTGCAAATATACGAATAG
TAAAAAAAAAAAAAAAAAAAAA

LD31216.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG12007-RA 1856 CG12007-RA 52..1856 1..1805 9025 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 953809..955609 1..1801 9005 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:24:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5128139..5129943 1..1805 9025 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4868970..4870774 1..1805 9025 100 Plus
Blast to na_te.dros performed on 2019-03-16 19:49:51 has no hits.

LD31216.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:51:07 Download gff for LD31216.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 953809..955609 1..1801 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:12:27 Download gff for LD31216.complete
Subject Subject Range Query Range Percent Splice Strand
CG12007-RA 1..1548 30..1577 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:01:31 Download gff for LD31216.complete
Subject Subject Range Query Range Percent Splice Strand
CG12007-RA 1..1548 30..1577 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:34:22 Download gff for LD31216.complete
Subject Subject Range Query Range Percent Splice Strand
CG12007-RA 1..1548 30..1577 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:31:58 Download gff for LD31216.complete
Subject Subject Range Query Range Percent Splice Strand
CG12007-RA 1..1548 30..1577 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:43:03 Download gff for LD31216.complete
Subject Subject Range Query Range Percent Splice Strand
CG12007-RA 1..1548 30..1577 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:49:26 Download gff for LD31216.complete
Subject Subject Range Query Range Percent Splice Strand
CG12007-RA 52..1852 1..1801 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:01:31 Download gff for LD31216.complete
Subject Subject Range Query Range Percent Splice Strand
CG12007-RA 52..1852 1..1801 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:22 Download gff for LD31216.complete
Subject Subject Range Query Range Percent Splice Strand
CG12007-RA 53..1853 1..1801 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:31:58 Download gff for LD31216.complete
Subject Subject Range Query Range Percent Splice Strand
CG12007-RA 52..1852 1..1801 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:43:03 Download gff for LD31216.complete
Subject Subject Range Query Range Percent Splice Strand
CG12007-RA 53..1853 1..1801 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:07 Download gff for LD31216.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5128139..5129939 1..1801 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:07 Download gff for LD31216.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5128139..5129939 1..1801 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:07 Download gff for LD31216.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5128139..5129939 1..1801 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:22 Download gff for LD31216.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 953861..955661 1..1801 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:08:36 Download gff for LD31216.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4868970..4870770 1..1801 100   Plus

LD31216.hyp Sequence

Translation from 2 to 1576

> LD31216.hyp
YWTLIQFRAMHGRVKVRTTEEERERKKKEQALKVRAYRAAMGRIQKKREA
GELDNEMLSLTVQILLRNPDVSMLWNIRRECVLEKLFRLKEEEATCETPS
EEKPEKENQTGENKPSEKKAAGEDKAHSIFTCELDLTEQCLMVNPKSYNA
WHHRCWTLEQNPRADWQQEVKLCNKYLKFDERNFHTWDYRRYVTGKAMVP
ATQELDFCTEKIRANFSNYSSWHHRSLLLPELYPNQQRDRPMSEEKLQKE
LEMVLTAAFTDPNDSSAWFYQRWLLGSGAQLDRAPRIAAFRLESHGAVLA
LDKPYPDIKQLKTELVGGGQTILLEFWLPVDKRGTSWKCQQNFDYQRNSA
YSLRLSDQKVDLSPLSGSENGAYYIAPPHGTTSCSKDLLAELQTQLQSCL
DLLEFEPDSKWTLLTSALLMRAIDFSANHETSLAHLAKLEKVDFLREGYY
KDLAARWTLEWELAKWPQSADFPKRFDIANAVLLESLPYDQYLVIADEIT
LPNKLRDKLGESVPKTFADLKLQS*

LD31216.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12007-PA 515 CG12007-PA 1..515 10..524 2728 100 Plus

LD31216.pep Sequence

Translation from 29 to 1576

> LD31216.pep
MHGRVKVRTTEEERERKKKEQALKVRAYRAAMGRIQKKREAGELDNEMLS
LTVQILLRNPDVSMLWNIRRECVLEKLFRLKEEEATCETPSEEKPEKENQ
TGENKPSEKKAAGEDKAHSIFTCELDLTEQCLMVNPKSYNAWHHRCWTLE
QNPRADWQQEVKLCNKYLKFDERNFHTWDYRRYVTGKAMVPATQELDFCT
EKIRANFSNYSSWHHRSLLLPELYPNQQRDRPMSEEKLQKELEMVLTAAF
TDPNDSSAWFYQRWLLGSGAQLDRAPRIAAFRLESHGAVLALDKPYPDIK
QLKTELVGGGQTILLEFWLPVDKRGTSWKCQQNFDYQRNSAYSLRLSDQK
VDLSPLSGSENGAYYIAPPHGTTSCSKDLLAELQTQLQSCLDLLEFEPDS
KWTLLTSALLMRAIDFSANHETSLAHLAKLEKVDFLREGYYKDLAARWTL
EWELAKWPQSADFPKRFDIANAVLLESLPYDQYLVIADEITLPNKLRDKL
GESVPKTFADLKLQS*

LD31216.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18924-PA 508 GF18924-PA 1..508 1..513 1878 73.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12615-PA 512 GG12615-PA 1..512 1..515 2356 88.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17686-PA 502 GH17686-PA 1..498 1..490 1506 61.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG12007-PA 515 CG12007-PA 1..515 1..515 2728 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22537-PA 489 GI22537-PA 1..488 1..491 1636 64.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21629-PA 507 GL21629-PA 1..506 1..514 1824 69.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11330-PA 507 GA11330-PA 1..506 1..514 1799 69.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:48:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10787-PA 515 GM10787-PA 1..515 1..515 2542 94.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19760-PA 511 GD19760-PA 1..511 1..515 2484 93.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10140-PA 512 GJ10140-PA 1..511 1..491 1619 63.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12957-PA 516 GK12957-PA 1..516 1..513 1647 64.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25449-PA 517 GE25449-PA 1..514 1..512 2342 88.3 Plus
Dyak\GE14963-PA 160 GE14963-PA 1..157 356..512 727 87.9 Plus