Clone LD31235 Report

Search the DGRC for LD31235

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:312
Well:35
Vector:pOT2
Associated Gene/TranscriptCG14103-RA
Protein status:LD31235.pep: gold
Preliminary Size:1178
Sequenced Size:1053

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14103 2001-01-01 Release 2 assignment
CG14103 2001-10-10 Blastp of sequenced clone
CG14103 2003-01-01 Sim4 clustering to Release 3
CG14103 2008-04-29 Release 5.5 accounting
CG14103 2008-08-15 Release 5.9 accounting
CG14103 2008-12-18 5.12 accounting

Clone Sequence Records

LD31235.complete Sequence

1053 bp (1053 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061389

> LD31235.complete
TCTTACTATTCAATTGAAAGCAGTTCTAATTGTAATAACAATGAGTAATC
TGGCGAGACGACCACTGCATGGTAACGAACCTGGGGCTCTTTCCCAGTCA
AAGGACGATGTGGACCAGGACCACTCCTACAATAGGCAGCCGGTACAAAG
CTACGAGGAAGGGACATCTTCGGCCGACGAACTGGAAGAAAGTGAATCCC
ATGACGAACCCAGTATTCCCAAACCCACCGATCAGTCCAGAAGACGCAGT
ATTTCAACTTCTAGGCCGAGTTCAAGGCAGGAGCAGCACAATTCTATCAA
TGAACATCACAACGGCATCGGTATTAAACTAGCGCTTGCCGGTGTTCTAT
TTGGTTTATTGGTTGTCTATGGGTACGGATCCAGCATTATAGAGGAGAAA
CAGTGTGACTTTAAGGATCTCAGGACAAAGTATCCCCAGCAGCAGGAAAA
AGTATGGAGAGCCCTGCAAAAGGGGATCGAGGGGCTGATTAACAAAAAGG
ACAAGCACCCCAGTGTATTTTTGTTCCTGCACCAGGATCCAAAGCTGGAG
AAACTGATCGATGAAATTGCCATTGAGGCTTCAATGTGCTTTGGTGGTCC
CCGAAAGCTGATTCACATGAAGAAGGAGCACATGAAGGAATACGGTTTGG
CGATTGAACAATTCAAATCAAAAATCAACGATGGAAAGGTTTTTTTAATA
GTGAACCTAAATGAAATTGCGCCGAATGGAGCTCGAGCCCTGCACACAAT
CTGCGATACCTACAGCCCTCTGGTGGAGGATGCAGTCATCTTCCTCTCCC
TTCGAACATTCAACACAACCGCCGTGAACAACTCCGTCAATCTAGCCACG
GATACTCTGTACGATCTGTGGGACCAGGAGTTGGGGGACCACGAGCTGGA
TCCTTTAATTACTCGAGTTACTGATCAGGTGCTCCATTTGAGTTAAACTG
AAAGACACTATTCAAAATCTTTTTACAAAGCTTATAAAGCAATAAATAAA
GAGAATTTTGTTGGCTCTCGATGATAAAAAAAACAAAAAAAAAAAAAAAA
AAA

LD31235.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG14103-RA 1644 CG14103-RA 93..1120 1..1028 5140 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19793852..19794446 595..1 2975 100 Minus
chr3L 24539361 chr3L 19793297..19793609 1028..716 1565 100 Minus
chr3L 24539361 chr3L 19793665..19793787 715..593 615 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:25:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:12:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19804475..19805069 595..1 2975 100 Minus
3L 28110227 3L 19803920..19804232 1028..716 1565 100 Minus
3L 28110227 3L 19804288..19804410 715..593 615 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19797575..19798169 595..1 2975 100 Minus
3L 28103327 3L 19797020..19797332 1028..716 1565 100 Minus
3L 28103327 3L 19797388..19797510 715..593 615 100 Minus
Blast to na_te.dros performed 2019-03-16 04:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 2089..2197 605..719 121 59.5 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 8307..8346 164..203 110 75 Plus

LD31235.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:13:58 Download gff for LD31235.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19793289..19793609 716..1034 98 <- Minus
chr3L 19793665..19793786 594..715 100 <- Minus
chr3L 19793854..19794446 1..593 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:12:32 Download gff for LD31235.complete
Subject Subject Range Query Range Percent Splice Strand
CG14103-RA 1..906 41..946 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:39:55 Download gff for LD31235.complete
Subject Subject Range Query Range Percent Splice Strand
CG14103-RA 1..906 41..946 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:21:20 Download gff for LD31235.complete
Subject Subject Range Query Range Percent Splice Strand
CG14103-RA 1..906 41..946 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:08:44 Download gff for LD31235.complete
Subject Subject Range Query Range Percent Splice Strand
CG14103-RA 1..906 41..946 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:31:17 Download gff for LD31235.complete
Subject Subject Range Query Range Percent Splice Strand
CG14103-RA 1..906 41..946 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:21:26 Download gff for LD31235.complete
Subject Subject Range Query Range Percent Splice Strand
CG14103-RA 1..1028 1..1028 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:39:55 Download gff for LD31235.complete
Subject Subject Range Query Range Percent Splice Strand
CG14103-RA 1..1025 1..1025 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:21:20 Download gff for LD31235.complete
Subject Subject Range Query Range Percent Splice Strand
CG14103-RB 12..1043 1..1034 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:08:44 Download gff for LD31235.complete
Subject Subject Range Query Range Percent Splice Strand
CG14103-RA 1..1028 1..1028 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:31:17 Download gff for LD31235.complete
Subject Subject Range Query Range Percent Splice Strand
CG14103-RB 12..1043 1..1034 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:13:58 Download gff for LD31235.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19803912..19804232 716..1034 98 <- Minus
3L 19804288..19804409 594..715 100 <- Minus
3L 19804477..19805069 1..593 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:13:58 Download gff for LD31235.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19803912..19804232 716..1034 98 <- Minus
3L 19804288..19804409 594..715 100 <- Minus
3L 19804477..19805069 1..593 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:13:58 Download gff for LD31235.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19803912..19804232 716..1034 98 <- Minus
3L 19804288..19804409 594..715 100 <- Minus
3L 19804477..19805069 1..593 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:21:20 Download gff for LD31235.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19797012..19797332 716..1034 98 <- Minus
arm_3L 19797388..19797509 594..715 100 <- Minus
arm_3L 19797577..19798169 1..593 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:44:58 Download gff for LD31235.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19797012..19797332 716..1034 98 <- Minus
3L 19797388..19797509 594..715 100 <- Minus
3L 19797577..19798169 1..593 100   Minus

LD31235.hyp Sequence

Translation from 0 to 945

> LD31235.hyp
LTIQLKAVLIVITMSNLARRPLHGNEPGALSQSKDDVDQDHSYNRQPVQS
YEEGTSSADELEESESHDEPSIPKPTDQSRRRSISTSRPSSRQEQHNSIN
EHHNGIGIKLALAGVLFGLLVVYGYGSSIIEEKQCDFKDLRTKYPQQQEK
VWRALQKGIEGLINKKDKHPSVFLFLHQDPKLEKLIDEIAIEASMCFGGP
RKLIHMKKEHMKEYGLAIEQFKSKINDGKVFLIVNLNEIAPNGARALHTI
CDTYSPLVEDAVIFLSLRTFNTTAVNNSVNLATDTLYDLWDQELGDHELD
PLITRVTDQVLHLS*

LD31235.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG14103-PB 301 CG14103-PB 1..301 14..314 1566 100 Plus
CG14103-PA 301 CG14103-PA 1..301 14..314 1566 100 Plus

LD31235.pep Sequence

Translation from 40 to 945

> LD31235.pep
MSNLARRPLHGNEPGALSQSKDDVDQDHSYNRQPVQSYEEGTSSADELEE
SESHDEPSIPKPTDQSRRRSISTSRPSSRQEQHNSINEHHNGIGIKLALA
GVLFGLLVVYGYGSSIIEEKQCDFKDLRTKYPQQQEKVWRALQKGIEGLI
NKKDKHPSVFLFLHQDPKLEKLIDEIAIEASMCFGGPRKLIHMKKEHMKE
YGLAIEQFKSKINDGKVFLIVNLNEIAPNGARALHTICDTYSPLVEDAVI
FLSLRTFNTTAVNNSVNLATDTLYDLWDQELGDHELDPLITRVTDQVLHL
S*

LD31235.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:37:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10850-PA 314 GF10850-PA 1..313 4..301 723 50.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13373-PA 265 GG13373-PA 1..262 1..301 1073 70.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16916-PA 333 GH16916-PA 3..331 5..300 497 39 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
TORIP-PB 301 CG14103-PB 1..301 1..301 1566 100 Plus
TORIP-PA 301 CG14103-PA 1..301 1..301 1566 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13670-PA 314 GI13670-PA 107..312 102..300 486 48.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21850-PA 269 GL21850-PA 20..265 30..300 655 50.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26427-PA 269 GA26427-PA 59..265 98..300 626 58.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16288-PA 300 GM16288-PA 1..300 1..301 1439 93 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12251-PA 301 GD12251-PA 1..301 1..301 1441 94.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14006-PA 330 GJ14006-PA 9..328 5..300 484 39.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16704-PA 287 GK16704-PA 82..285 93..300 499 50.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22466-PA 304 GE22466-PA 1..301 1..301 1383 84.7 Plus