Clone LD31286 Report

Search the DGRC for LD31286

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:312
Well:86
Vector:pOT2
Associated Gene/TranscriptRpS6-RA
Protein status:LD31286.pep: gold
Preliminary Size:3346
Sequenced Size:1146

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10944 2001-01-01 Release 2 assignment
CG10944 2001-09-19 Blastp of sequenced clone
RpS6 2008-04-29 Release 5.5 accounting
RpS6 2008-08-15 Release 5.9 accounting
RpS6 2008-12-18 5.12 accounting

Clone Sequence Records

LD31286.complete Sequence

1146 bp (1146 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058620

> LD31286.complete
AACAGACCGACAATATGAAGGTGTGCTAAAAATTTGTGATAATACTGATA
TAAATTATATCAATTTGTGAAATATTGCGAAAATGCTAAAGCGCAAGCAT
TGGCGCGGTGATCAAACAAATTGCAAGCGAAAATGTCCAGTGATTGCGTT
AAAATAAGTGGATGATATTATCTCCGCTGCAATTCGACTTAATATACATT
TATATGTATGTTTATGCATTGTGTGTGACTTTTTTTTTTGCATTGTGTGT
TCCAGCTCAACGTTTCCTATCCCGCGACGGGATGCCAAAAGCTATTCGAA
GTGGTCGACGAGCACAAGCTGCGCGTCTTCTACGAGAAGCGTATGGGACA
GGTTGTGGAGGCCGATATCCTCGGTGACGAGTGGAAGGGCTACCAGCTGC
GCATCGCCGGCGGCAACGACAAGCAGGGATTCCCCATGAAGCAGGGTGTC
TTGACCCACGGCCGTGTGCGTCTGCTCCTGAAGAAGGGACACTCCTGCTA
CCGTCCACGCCGCACTGGCGAGCGTAAGCGCAAGTCTGTGCGTGGATGCA
TCGTGGACGCCAACATGTCTGTGCTGGCTCTGGTCGTCTTGAAGAAGGGT
GAGAAGGACATTCCCGGTCTCACCGACACCACCATCCCACGTCGCCTGGG
ACCCAAGCGTGCTAGCAAGATCCGCAAGCTCTACAACTTGAGCAAGGAAG
ATGATGTGCGTCGCTTCGTTGTGCGTCGCCCTTTGCCCGCCAAGGACAAC
AAGAAGGCCACCTCCAAGGCCCCCAAAATTCAGCGCCTGATCACCCCCGT
TGTGCTGCAGCGCAAGCACCGTCGCATTGCGCTGAAGAAGAAGCGCCAGA
TCGCTTCCAAGGAGGCTTCCGCCGACTACGCCAAGCTGTTGGTGCAGCGC
AAGAAGGAGTCCAAGGCCAAGCGCGAGGAGGCCAAGCGCCGCCGTTCTGC
CTCCATTCGCGAGTCCAAGAGCTCTGTCTCCAGCGACAAGAAGTAAACAC
CGCGACACGGAACCCACATTCTTCGTTTAAGCAGAAACTGAACGTTGATC
ACAACCAAATGATCCACGAGAGGAGAAATAAAACTTTGTAACCATTTATG
TTAAATAAACGCGATAAATGGTATAGAAAAAAAAAAAAAAAAAAAA

LD31286.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:18:47
Subject Length Description Subject Range Query Range Score Percent Strand
RpS6-RA 1228 RpS6-RA 99..1226 1..1128 5640 100 Plus
RpS6-RB 1164 RpS6-RB 133..1007 254..1128 4375 100 Plus
DMG8-chrX.14.011.b 703 DMG8-chrX.14.011.b 378..504 929..1054 370 87.4 Plus
DMG8-chrX.14.011.b 703 DMG8-chrX.14.011.b 300..389 836..925 270 86.6 Plus
DMG8-chrX.14.011.b 703 DMG8-chrX.14.011.b 65..187 475..597 195 77.2 Plus
DMG8-chrX.14.011.b 703 DMG8-chrX.14.011.b 505..544 1089..1128 185 97.5 Plus
DMG8-chrX.14.011.b 703 DMG8-chrX.14.011.b 196..266 636..706 175 83 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 7791523..7792189 1126..460 3320 99.9 Minus
chrX 22417052 chrX 7792701..7793161 461..1 2305 100 Minus
chrX 22417052 chrX 7789185..7789389 1054..836 415 81.4 Minus
chrX 22417052 chrX 7790375..7790579 1054..836 415 81.4 Minus
chrX 22417052 chrX 7789502..7789624 597..475 195 77.2 Minus
chrX 22417052 chrX 7790692..7790814 597..475 195 77.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 19:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
snoRNA:Or-aca2-RA 142 CR34593-RA 1..142 60..201 710 100 Plus
CR11386-RB 429 CR11386-RB 284..373 836..925 270 86.6 Plus
CR11386-RB 429 CR11386-RB 49..171 475..597 195 77.2 Plus
CR11386-RB 429 CR11386-RB 362..429 929..996 175 83.8 Plus
CR11386-RB 429 CR11386-RB 180..250 636..706 175 83 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7899622..7900290 1128..460 3345 100 Minus
X 23542271 X 7900802..7901262 461..1 2305 100 Minus
X 23542271 X 7897286..7897490 1054..836 415 81.4 Minus
X 23542271 X 7898476..7898680 1054..836 415 81.4 Minus
X 23542271 X 7897603..7897725 597..475 195 77.2 Minus
X 23542271 X 7898793..7898915 597..475 195 77.2 Minus
X 23542271 X 7897246..7897285 1128..1089 185 97.5 Minus
X 23542271 X 7898436..7898475 1128..1089 185 97.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 7907720..7908388 1128..460 3345 100 Minus
X 23527363 X 7908900..7909360 461..1 2305 100 Minus
X 23527363 X 7906574..7906700 1054..929 370 87.4 Minus
X 23527363 X 7905384..7905510 1054..929 370 87.4 Minus
X 23527363 X 7906689..7906778 925..836 270 86.6 Minus
X 23527363 X 7905499..7905588 925..836 270 86.6 Minus
X 23527363 X 7906891..7907013 597..475 195 77.2 Minus
X 23527363 X 7905701..7905823 597..475 195 77.2 Minus
X 23527363 X 7905344..7905383 1128..1089 185 97.5 Minus
X 23527363 X 7906534..7906573 1128..1089 185 97.5 Minus
X 23527363 X 7905622..7905692 706..636 175 83 Minus
X 23527363 X 7906812..7906882 706..636 175 83 Minus
Blast to na_te.dros performed on 2019-03-15 16:01:50 has no hits.

LD31286.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:02:55 Download gff for LD31286.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 7791523..7792188 461..1126 99 <- Minus
chrX 7792702..7793161 1..460 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:12:36 Download gff for LD31286.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RB 2..747 251..996 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:01:35 Download gff for LD31286.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RB 2..747 251..996 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:49:30 Download gff for LD31286.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RB 2..747 251..996 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:32:02 Download gff for LD31286.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RB 2..747 251..996 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:23:54 Download gff for LD31286.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RB 2..747 251..996 99   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 19:25:07 Download gff for LD31286.complete
Subject Subject Range Query Range Percent Splice Strand
snoRNA:Or-aca2-RA 1..142 60..201 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:49:32 Download gff for LD31286.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RA 1..1126 1..1126 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:01:35 Download gff for LD31286.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RA 1..1126 1..1126 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:49:30 Download gff for LD31286.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RA 70..1195 1..1126 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:32:02 Download gff for LD31286.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RA 1..1126 1..1126 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:23:54 Download gff for LD31286.complete
Subject Subject Range Query Range Percent Splice Strand
RpS6-RA 70..1195 1..1126 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:02:55 Download gff for LD31286.complete
Subject Subject Range Query Range Percent Splice Strand
X 7899624..7900289 461..1126 100 <- Minus
X 7900803..7901262 1..460 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:02:55 Download gff for LD31286.complete
Subject Subject Range Query Range Percent Splice Strand
X 7899624..7900289 461..1126 100 <- Minus
X 7900803..7901262 1..460 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:02:55 Download gff for LD31286.complete
Subject Subject Range Query Range Percent Splice Strand
X 7899624..7900289 461..1126 100 <- Minus
X 7900803..7901262 1..460 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:49:30 Download gff for LD31286.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7793657..7794322 461..1126 100 <- Minus
arm_X 7794836..7795295 1..460 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:08:40 Download gff for LD31286.complete
Subject Subject Range Query Range Percent Splice Strand
X 7907722..7908387 461..1126 100 <- Minus
X 7908901..7909360 1..460 100   Minus

LD31286.hyp Sequence

Translation from 342 to 995

> LD31286.hyp
MGQVVEADILGDEWKGYQLRIAGGNDKQGFPMKQGVLTHGRVRLLLKKGH
SCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKDIPGLTDTTIPR
RLGPKRASKIRKLYNLSKEDDVRRFVVRRPLPAKDNKKATSKAPKIQRLI
TPVVLQRKHRRIALKKKRQIASKEASADYAKLLVQRKKESKAKREEAKRR
RSASIRESKSSVSSDKK*

LD31286.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:43:03
Subject Length Description Subject Range Query Range Score Percent Strand
RpS6-PA 217 CG10944-PA 1..217 1..217 1087 100 Plus
RpS6-PB 248 CG10944-PB 32..248 1..217 1087 100 Plus

LD31286.pep Sequence

Translation from 342 to 995

> LD31286.pep
MGQVVEADILGDEWKGYQLRIAGGNDKQGFPMKQGVLTHGRVRLLLKKGH
SCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKDIPGLTDTTIPR
RLGPKRASKIRKLYNLSKEDDVRRFVVRRPLPAKDNKKATSKAPKIQRLI
TPVVLQRKHRRIALKKKRQIASKEASADYAKLLVQRKKESKAKREEAKRR
RSASIRESKSSVSSDKK*

LD31286.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21093-PA 248 GF21093-PA 32..248 1..217 1078 96.3 Plus
Dana\GF10419-PA 249 GF10419-PA 32..226 1..195 802 78.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17600-PA 222 GG17600-PA 32..222 1..217 928 86.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24620-PA 248 GH24620-PA 32..238 1..207 1016 94.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
RpS6-PA 217 CG10944-PA 1..217 1..217 1087 100 Plus
RpS6-PB 248 CG10944-PB 32..248 1..217 1087 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11119-PA 248 GI11119-PA 32..238 1..207 1007 94.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18222-PA 236 GL18222-PA 20..226 1..207 1032 96.6 Plus
Dper\GL17130-PA 218 GL17130-PA 32..204 1..198 540 61.6 Plus
Dper\GL25484-PA 61 GL25484-PA 2..49 100..147 197 81.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10657-PA 248 GA10657-PA 32..238 1..207 1032 96.6 Plus
Dpse\GA23494-PA 243 GA23494-PA 32..229 1..198 676 70.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11965-PA 246 GM11965-PA 32..236 1..207 807 82.1 Plus
Dsec\GM11553-PA 144 GM11553-PA 5..144 32..217 334 51.1 Plus
Dsec\GM11558-PA 144 GM11558-PA 5..144 32..217 334 51.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16145-PA 248 GD16145-PA 32..248 1..217 1104 99.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15976-PA 248 GJ15976-PA 32..248 1..217 1079 96.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:47:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25015-PA 248 GK25015-PA 32..238 1..207 1031 96.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:47:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\RpS6-PA 222 GE17500-PA 32..222 1..217 928 86.2 Plus