Clone LD31322 Report

Search the DGRC for LD31322

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:313
Well:22
Vector:pOT2
Associated Gene/TranscriptCG12301-RA
Protein status:LD31322.pep: gold
Preliminary Size:2426
Sequenced Size:2495

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12301 2001-11-29 Blastp of sequenced clone
CG12301 2003-01-01 Sim4 clustering to Release 3
CG12301 2008-04-29 Release 5.5 accounting
CG12301 2008-08-15 Release 5.9 accounting
CG12301 2008-12-18 5.12 accounting

Clone Sequence Records

LD31322.complete Sequence

2495 bp (2495 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069576

> LD31322.complete
GAAGTATTTTTGTATTGTTATTTGATTTTAAATATTTTCCTGACAAAAAT
GAGTGACGACGAGGAGCACTACGAACCAAAGGCACACAAGAAGCTGCTGC
AGGCCATCGGCAGTCTGGGCAAGGTGCAGCACATCCAGAAGTCCACGCGC
GACGAGCGGCAGTCGCTCCAGGATGAGTTCCAGCTGGTAAAAGGTGTTTC
GTCAGCGGAAACGGATCATGCCCCCAGAGCCGTGGGTCTGAACGATCTGG
TAGACATCCTACGCACCTCCACCAAGCACAGTCAGACGGGCAAGAAGCTC
AAGAACATCCATGGCAGCAAAAAGGTGCTACAGAAGCCGCTGGAGAAACC
AGCTGCGGATCGAATTAAACGGACCATTGGCTACGAGGGAGTTACCAAGA
AACTCGGTCGTTGGGATGCTGTGGTGGCTCAACAGAGATCTGCGGAGACG
CAGATCTTCCCCCTACCATCTGAAACGGTTTACGTAAATACTGCGGCAAA
TGCCAGGCCTCTAAACACCCGGGTCAAGTCCAATCTTGCTCAAGAACTCG
AGGCTAACAACCGTAAACTACGGGAACTGCGCAAAGCGCAAATTGGGGAT
ACCACGGATGAAAAGGAGCTGGCCAAGCAAGAGCGGCTTTTACTACAAAA
GAAGCTTACCAGGGACGAACTATTTGCCCGTCGCAAGGAGCTAGCTTACC
TGAAGATGCGCGAGTCTCAAAAGTCAGCAAAGGCGCGCATGCAAAACAAA
ATCAAATCGAAAAAGTTCCACAAGCTGCAGAAGAGACAAAAAATGTTGGA
GCAGATGAAGGAGTTCGAGTTGCTGCAGAAAACCGATCCAGAGGCGGCGC
TGGAAAAGCTTAATGCCCTGGAAAAGAGTCGAGTGCAGGAGCGTGCCAGC
CTGCGGCACAAGAACACCGGTACTTGGGCGAAGAATCTGCAGATACGGGC
CAAGTACGACAAGGATGTGCGAAAGGATCTGGCCGAGCAGTTGGCTGTTA
GCAGGGAACTGACCCAGAAAAAGCAGGTGTCAGACAGCGAAGATGAAACC
ACCAAGAAGAGAGTTTTACCCGAGGAGGAGGATAATGACTACGATCCCTT
TAATCCTTGGACAAAAAGAAAAGCTACAGAGCAAACGGAAAATGGAAATG
GTGAAAGTGAGGGTTCCAATTGGCGGCAATATTGGACAAAAAGGAATAAA
AACGAAAAGTTACTGGAGGAGCATCGTAGGGATTTGGAAGGAGTCCAGGA
TAATGACGAGCAGGAGGAGAAAGAAACTATTCGGAAACCATTAATAGAAG
TAAAACCTGCTAAGAAGAAACTTAAGAAATCGAAAGTTAAGATAGAAAAT
GGCTGGGAGGTGGAAGATATTTGCCCAACTGATCAGAAAGAAGCCAAGGC
AAGCCCGAATTCAAAAGCCATTGATGACATTTTTGAGAAACACGAGGATC
ATATCAGAGCCAAACTAAATAAGAAAATGGAGAAATTGAGGGAACGGATA
AACAAACTTAAAGAAGTTCCTGTCAAGGGAAAGAAGGCGAAAAAGAAGGA
CGTCTTGCAAAACCTAAAAAGTCTGGCTTTAAAAAAGACAAAGCAACAGA
TAGAGATTGACGAGCCCCTTAACTACGAGGAGGATAAAAATTCACAGAAT
AATATCCCTGCCCACGTTGAAGGTAACACAGAAAGCACGGAAATTCCAGC
TGTGGATACCATAGATCCCAACAAGGTGACAACTTTGGTGTTTACCCAAA
AGAAGGGCAACTCGGGAGGCTTTAACGATGCTCTAATAGACGATGAAGCA
GCTGAATACGACGAGGAAGACGCCGCTGCTGAACGCCAGTTGACAATCAG
TCAAGCCTTCGAGGATGATGACATTGTAGCTGATTTTAATCGGGACAAAA
GCAAGGACTCCGAGCTTAAGAACACTGAGCTTCAGCTCGCCCTGCCTGGA
TGGGGTTCCTGGGCGGGTGCTGGCATTTCGAAGGAGGTAATGGAGCGACG
AAACAAGCGGCTTCTTCTTAAGTTGGCTGCTCCGGAAAAGCGTCGTGACG
AGAATAAGGATAATCTTTACCTCAACGAGTCCGCCAGCAAGCAGGCGCGC
CAGCACATGGTCTCCAGCATACCATTTCCTTTCCGATCCCTGGCAGACTA
CGAAGCCAGTATCCGTGCTCCAGTTGGCCGGAACTTTGTGCCGGAGACGG
CGTTCCGCATGCTGACCCGTCCGGCAGTAATCACGCGCAAGGGCCAGGTA
ATCGAGCCCATGACAGAGAGCGAGCTGGTCAAGCCGGACAGGCGTCTACG
CCACATCGTGGACAGGAGGATAAAGCGCATACCGAAAGTGCCACCCAAGG
CCAAGATAGCATAGAACTAGGAATATTTTTAAAAATAAATCTGAATAATA
TGAACGATTGCCAGTCTCCTAATTTACTTAGCTATAGAAAGGGAAATTAT
TATATAAATTGCATTATTTTCTCAAAAAAAAAAAAAAAAAAAAAA

LD31322.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12301-RA 2603 CG12301-RA 94..2569 1..2476 12380 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15571280..15573302 451..2473 10040 99.8 Plus
chr3L 24539361 chr3L 15570771..15571223 1..453 2265 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:25:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15581351..15583376 451..2476 10130 100 Plus
3L 28110227 3L 15580842..15581294 1..453 2265 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15574451..15576476 451..2476 10130 100 Plus
3L 28103327 3L 15573942..15574394 1..453 2265 100 Plus
Blast to na_te.dros performed 2019-03-15 13:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
NOF 4347 NOF FB 4347bp Derived from X51937 (g8297) (Rel. 44, Last updated, Version 6). 432..473 1291..1331 117 78.6 Plus
transib1 2167 transib1 TRANSIB1 2167bp 1930..1971 45..2 116 77.3 Minus

LD31322.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:42:35 Download gff for LD31322.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15570771..15571223 1..453 100 -> Plus
chr3L 15571283..15573302 454..2473 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:12:37 Download gff for LD31322.complete
Subject Subject Range Query Range Percent Splice Strand
CG12301-RA 1..2316 49..2364 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:25:14 Download gff for LD31322.complete
Subject Subject Range Query Range Percent Splice Strand
CG12301-RA 1..2316 49..2364 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:09:17 Download gff for LD31322.complete
Subject Subject Range Query Range Percent Splice Strand
CG12301-RA 1..2316 49..2364 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:52:15 Download gff for LD31322.complete
Subject Subject Range Query Range Percent Splice Strand
CG12301-RA 1..2316 49..2364 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:37:51 Download gff for LD31322.complete
Subject Subject Range Query Range Percent Splice Strand
CG12301-RA 1..2316 49..2364 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:01:00 Download gff for LD31322.complete
Subject Subject Range Query Range Percent Splice Strand
CG12301-RA 1..2473 1..2473 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:25:13 Download gff for LD31322.complete
Subject Subject Range Query Range Percent Splice Strand
CG12301-RA 1..2473 1..2473 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:09:17 Download gff for LD31322.complete
Subject Subject Range Query Range Percent Splice Strand
CG12301-RA 43..2515 1..2473 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:52:15 Download gff for LD31322.complete
Subject Subject Range Query Range Percent Splice Strand
CG12301-RA 1..2470 1..2470 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:37:51 Download gff for LD31322.complete
Subject Subject Range Query Range Percent Splice Strand
CG12301-RA 43..2515 1..2473 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:42:35 Download gff for LD31322.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15580842..15581294 1..453 100 -> Plus
3L 15581354..15583373 454..2473 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:42:35 Download gff for LD31322.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15580842..15581294 1..453 100 -> Plus
3L 15581354..15583373 454..2473 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:42:35 Download gff for LD31322.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15580842..15581294 1..453 100 -> Plus
3L 15581354..15583373 454..2473 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:09:17 Download gff for LD31322.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15573942..15574394 1..453 100 -> Plus
arm_3L 15574454..15576473 454..2473 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:28:32 Download gff for LD31322.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15573942..15574394 1..453 100 -> Plus
3L 15574454..15576473 454..2473 100   Plus

LD31322.hyp Sequence

Translation from 0 to 2363

> LD31322.hyp
EVFLYCYLILNIFLTKMSDDEEHYEPKAHKKLLQAIGSLGKVQHIQKSTR
DERQSLQDEFQLVKGVSSAETDHAPRAVGLNDLVDILRTSTKHSQTGKKL
KNIHGSKKVLQKPLEKPAADRIKRTIGYEGVTKKLGRWDAVVAQQRSAET
QIFPLPSETVYVNTAANARPLNTRVKSNLAQELEANNRKLRELRKAQIGD
TTDEKELAKQERLLLQKKLTRDELFARRKELAYLKMRESQKSAKARMQNK
IKSKKFHKLQKRQKMLEQMKEFELLQKTDPEAALEKLNALEKSRVQERAS
LRHKNTGTWAKNLQIRAKYDKDVRKDLAEQLAVSRELTQKKQVSDSEDET
TKKRVLPEEEDNDYDPFNPWTKRKATEQTENGNGESEGSNWRQYWTKRNK
NEKLLEEHRRDLEGVQDNDEQEEKETIRKPLIEVKPAKKKLKKSKVKIEN
GWEVEDICPTDQKEAKASPNSKAIDDIFEKHEDHIRAKLNKKMEKLRERI
NKLKEVPVKGKKAKKKDVLQNLKSLALKKTKQQIEIDEPLNYEEDKNSQN
NIPAHVEGNTESTEIPAVDTIDPNKVTTLVFTQKKGNSGGFNDALIDDEA
AEYDEEDAAAERQLTISQAFEDDDIVADFNRDKSKDSELKNTELQLALPG
WGSWAGAGISKEVMERRNKRLLLKLAAPEKRRDENKDNLYLNESASKQAR
QHMVSSIPFPFRSLADYEASIRAPVGRNFVPETAFRMLTRPAVITRKGQV
IEPMTESELVKPDRRLRHIVDRRIKRIPKVPPKAKIA*

LD31322.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12301-PA 771 CG12301-PA 1..771 17..787 3923 100 Plus
rudhira-PE 2075 CG43154-PE 1238..1666 88..539 205 24.1 Plus
rudhira-PC 2075 CG43154-PC 1238..1666 88..539 205 24.1 Plus
Strn-Mlck-PT 7905 CG44162-PT 3945..4522 52..640 197 19.3 Plus
Strn-Mlck-PV 7944 CG44162-PV 3984..4561 52..640 197 19.3 Plus
Strn-Mlck-PT 7905 CG44162-PT 3554..4132 14..640 191 19.9 Plus
Strn-Mlck-PT 7905 CG44162-PT 4365..4977 9..640 188 19.8 Plus
Strn-Mlck-PT 7905 CG44162-PT 3397..4002 9..640 184 19.8 Plus
Strn-Mlck-PT 7905 CG44162-PT 4594..5084 14..538 166 22.2 Plus
rudhira-PE 2075 CG43154-PE 1283..1867 67..618 164 19.6 Plus
rudhira-PC 2075 CG43154-PC 1283..1867 67..618 164 19.6 Plus

LD31322.pep Sequence

Translation from 48 to 2363

> LD31322.pep
MSDDEEHYEPKAHKKLLQAIGSLGKVQHIQKSTRDERQSLQDEFQLVKGV
SSAETDHAPRAVGLNDLVDILRTSTKHSQTGKKLKNIHGSKKVLQKPLEK
PAADRIKRTIGYEGVTKKLGRWDAVVAQQRSAETQIFPLPSETVYVNTAA
NARPLNTRVKSNLAQELEANNRKLRELRKAQIGDTTDEKELAKQERLLLQ
KKLTRDELFARRKELAYLKMRESQKSAKARMQNKIKSKKFHKLQKRQKML
EQMKEFELLQKTDPEAALEKLNALEKSRVQERASLRHKNTGTWAKNLQIR
AKYDKDVRKDLAEQLAVSRELTQKKQVSDSEDETTKKRVLPEEEDNDYDP
FNPWTKRKATEQTENGNGESEGSNWRQYWTKRNKNEKLLEEHRRDLEGVQ
DNDEQEEKETIRKPLIEVKPAKKKLKKSKVKIENGWEVEDICPTDQKEAK
ASPNSKAIDDIFEKHEDHIRAKLNKKMEKLRERINKLKEVPVKGKKAKKK
DVLQNLKSLALKKTKQQIEIDEPLNYEEDKNSQNNIPAHVEGNTESTEIP
AVDTIDPNKVTTLVFTQKKGNSGGFNDALIDDEAAEYDEEDAAAERQLTI
SQAFEDDDIVADFNRDKSKDSELKNTELQLALPGWGSWAGAGISKEVMER
RNKRLLLKLAAPEKRRDENKDNLYLNESASKQARQHMVSSIPFPFRSLAD
YEASIRAPVGRNFVPETAFRMLTRPAVITRKGQVIEPMTESELVKPDRRL
RHIVDRRIKRIPKVPPKAKIA*

LD31322.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24082-PA 779 GF24082-PA 1..777 1..769 2882 74.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15912-PA 768 GG15912-PA 1..768 1..771 3639 90.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14745-PA 764 GH14745-PA 1..754 1..761 2550 68.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG12301-PA 771 CG12301-PA 1..771 1..771 3923 100 Plus
rudhira-PE 2075 CG43154-PE 1238..1666 72..523 205 24.1 Plus
rudhira-PC 2075 CG43154-PC 1238..1666 72..523 205 24.1 Plus
Strn-Mlck-PT 7905 CG44162-PT 3945..4522 36..624 197 19.3 Plus
Strn-Mlck-PV 7944 CG44162-PV 3984..4561 36..624 197 19.3 Plus
Strn-Mlck-PS 8216 CG44162-PS 3945..4522 36..624 197 19.3 Plus
Strn-Mlck-PU 8255 CG44162-PU 3984..4561 36..624 197 19.3 Plus
Strn-Mlck-PT 7905 CG44162-PT 3493..4132 2..624 185 21.6 Plus
Strn-Mlck-PV 7944 CG44162-PV 3532..4171 2..624 185 21.6 Plus
Strn-Mlck-PS 8216 CG44162-PS 3493..4132 2..624 185 21.6 Plus
Strn-Mlck-PU 8255 CG44162-PU 3532..4171 2..624 185 21.6 Plus
Strn-Mlck-PT 7905 CG44162-PT 4400..4977 36..624 183 19.8 Plus
Strn-Mlck-PV 7944 CG44162-PV 4439..5016 36..624 183 19.8 Plus
Strn-Mlck-PS 8216 CG44162-PS 4400..4977 36..624 183 19.8 Plus
Strn-Mlck-PU 8255 CG44162-PU 4439..5016 36..624 183 19.8 Plus
rgn-PD 800 CG6014-PD 453..798 165..522 181 21.6 Plus
rgn-PA 800 CG6014-PA 453..798 165..522 181 21.6 Plus
rgn-PC 808 CG6014-PC 461..806 165..522 181 21.6 Plus
rgn-PB 808 CG6014-PB 461..806 165..522 181 21.6 Plus
Strn-Mlck-PT 7905 CG44162-PT 3410..4002 8..624 176 19.3 Plus
Strn-Mlck-PV 7944 CG44162-PV 3449..4041 8..624 176 19.3 Plus
Strn-Mlck-PS 8216 CG44162-PS 3410..4002 8..624 176 19.3 Plus
Strn-Mlck-PU 8255 CG44162-PU 3449..4041 8..624 176 19.3 Plus
CG31551-PA 1393 CG31551-PA 437..809 138..530 175 21.8 Plus
rudhira-PE 2075 CG43154-PE 1283..1867 51..602 164 19.6 Plus
rudhira-PC 2075 CG43154-PC 1283..1867 51..602 164 19.6 Plus
Strn-Mlck-PT 7905 CG44162-PT 4595..5084 36..522 161 19.6 Plus
Strn-Mlck-PV 7944 CG44162-PV 4634..5123 36..522 161 19.6 Plus
Strn-Mlck-PS 8216 CG44162-PS 4595..5084 36..522 161 19.6 Plus
Strn-Mlck-PU 8255 CG44162-PU 4634..5123 36..522 161 19.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:04:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13123-PA 765 GI13123-PA 1..760 1..769 2281 62.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24932-PA 615 GL24932-PA 1..364 1..364 1565 83 Plus
Dper\GL24932-PA 615 GL24932-PA 357..615 512..771 1035 78.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11542-PA 765 GA11542-PA 1..765 1..771 2808 74.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25544-PA 627 GM25544-PA 1..478 1..478 2242 93.5 Plus
Dsec\GM25544-PA 627 GM25544-PA 474..627 618..771 818 97.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14557-PA 771 GD14557-PA 1..771 1..771 3729 94.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:04:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13870-PA 756 GJ13870-PA 1..749 1..761 2550 69 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20454-PA 769 GK20454-PA 1..769 1..771 2556 67.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22256-PA 771 GE22256-PA 1..771 1..771 3622 91.7 Plus
Dyak\GE19832-PA 771 GE19832-PA 1..771 1..771 3618 91.6 Plus