Clone LD31570 Report

Search the DGRC for LD31570

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:315
Well:70
Vector:pOT2
Associated Gene/Transcriptpor-RA
Protein status:LD31570.pep: gold
Preliminary Size:2157
Sequenced Size:1868

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6205 2001-01-01 Release 2 assignment
CG6205 2001-11-29 Blastp of sequenced clone
CG6205 2003-01-01 Sim4 clustering to Release 3
por 2008-04-29 Release 5.5 accounting
por 2008-08-15 Release 5.9 accounting
por 2008-12-18 5.12 accounting

Clone Sequence Records

LD31570.complete Sequence

1868 bp (1868 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069578

> LD31570.complete
CTCGGATTTCCGGGTTTTTCCTTGATTCCCCCGGATTGTATTGGCTTTGG
GCGGCCGGCGATGGACTACCAGTACTTCGAGGAGGAATCGGACTACATTG
ATCTGGACGAGGAGGAGGAGGATGACGACGTGGTGACAGCCGGCAGCTTG
GACCACAGATTTGGGCAGCCAAACGGCGAGGAGGACTATTATTTCGGCGG
GGACGATGTGGAGGAGGAGCTGGTGGTAGATGGACACGGTGTCCTGGAGC
TGGCCGGGCGCCTACTCGAGAGCCTGCAGAGCTGCGTGCAGCCATCTGTG
CTGCAGGTCATGCAGTATGTGGCGCCCATGCTGCTCCTCTGCCTCCTGTG
CCGCCTGCTGTGCCTCCTCTACTCGCAGCGCAGACGCCTCACCAGCCTGG
CACCGCTGCATTTGTTCCACTTCGCCTGCGGCTTGATTATACTGCAGATC
ACGGTGGGCTACCGACTGCTCCTACTTCTCCTGCTGGCCGCCGTGGGCTA
CCTGCTGCTCCAGCTATTGCGACTGGGACGAAGAGGAGCTCAAGTTCTGG
CCGTTCTAACCGTGGGCAGCCAGTTCCTGTACGAACTGCTCATTTGGCGG
CGGCGCAGTGACTGGCCACAGCTGCGCGGCATCCAGATGGTGGTCAATAT
GAAGCTTATCTCGCTGGGCTTCGACCTGACCGCCAGTGGGCAGCTGCAGG
CGAGGATTCCGGGTCCGTTTGCCTACCTGGGCTACATCTACAGTCCGGCC
ACCTGCGCCTTGGGGCCCTGGGTGAGCTTCGGCTGCTACATGGACTGTCT
GGTGCCACGGAATAGCTGGCTGGTCAGCCTGCGTCGCCTCTTGCCCAACG
TGGTGATCTGCGTGCTGGCCGTGACCGTGTCCAATTGCGTGGCTCCGGCG
CTGAGTGACTTCTTCGGGGATAGCTCGCACTTCCTGGTCATGTACTGGGA
CGCACTGAGTGTGCGCAGCAGCCACTACTTTGTGGGCATGATGGCGCAGG
CGCTGCTGGTAGCCTCCGATCAGCGACTGGACGGTGCCACCAAGGAGTCG
GACATGCTGGGTCCGTTGATCTCGCAGCCCTGGCGCATCGAGTGGCCGCG
CTCGATCAGCTCATTGGTCCGGAGCTGGAACATTCCCATGCACGAGTGGC
TCAAACGGTACATCTACGCGCCCTGCAAGCCCACCGCGTCCACCTCGAGG
GGACGCATCCTGGTGGTCGTGCTCTCCACCTATCTGGTGTCCAGCCTGCT
GCACGGCATGGATCTGCGCATCTATCTGGTGCTCATCTCGCTGGCGTTCC
TAGCCGAGGGTGAATCGCTGCTCAGGCGGCAGCTCGCCAGCCTCCTGAAT
GCCTGCATCACTGCCAATCTGTGTCCGGGCAAGGAACGATGTCGGTATAG
CCACTGCCCGAGCAAACGGCGATTGAACTCCCTGTCCTACTGGCTGGCGA
GGCTCACTAATCTGGCATTCACGGCGCTGGCCATCTTCCACCTGGCCTAT
CTGGGCGTCGTGCTGCTGGGCGATGACCTGGAAGTCGGCGAGGATGGCGA
CTCCTTCCTGTGGCACTGGCAGCAGGCTGGCTATCTCAGCCACTACATCG
GTTTGGGCACCTTCGTCCTTTACCTGTTCATCTCGTAGACTCCGCAGGAT
CTTGCCGTCGCCAATACTCACTATGACTGATCTACACGTATTTATATTTG
TAATCCCAAGCGTATATGCGCTTGTACTTTTTGTATCTTGTATCTATCTA
TTCGTATCTTGTAGTCTGTGTGCTGTGTGAGTACTTAATATTAAAGCATT
CTGTGAAACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAA
AAAAAAAAAAAAAAAAAA

LD31570.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
por-RA 2333 por-RA 39..1848 1..1810 9050 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 18267189..18269001 1810..1 8730 98.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:25:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18378004..18379813 1810..1 9050 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 18386102..18387911 1810..1 9050 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:03:31 has no hits.

LD31570.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:04:43 Download gff for LD31570.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 18267189..18269001 1..1810 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:12:54 Download gff for LD31570.complete
Subject Subject Range Query Range Percent Splice Strand
por-RA 1..1578 61..1638 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:27:05 Download gff for LD31570.complete
Subject Subject Range Query Range Percent Splice Strand
por-RA 1..1578 61..1638 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:27:48 Download gff for LD31570.complete
Subject Subject Range Query Range Percent Splice Strand
por-RA 1..1578 61..1638 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:54:31 Download gff for LD31570.complete
Subject Subject Range Query Range Percent Splice Strand
por-RA 1..1578 61..1638 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:24:32 Download gff for LD31570.complete
Subject Subject Range Query Range Percent Splice Strand
por-RA 1..1578 61..1638 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:03:46 Download gff for LD31570.complete
Subject Subject Range Query Range Percent Splice Strand
por-RA 39..1848 1..1810 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:27:05 Download gff for LD31570.complete
Subject Subject Range Query Range Percent Splice Strand
por-RA 39..1848 1..1810 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:27:48 Download gff for LD31570.complete
Subject Subject Range Query Range Percent Splice Strand
por-RA 39..1848 1..1810 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:54:31 Download gff for LD31570.complete
Subject Subject Range Query Range Percent Splice Strand
por-RA 39..1848 1..1810 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:24:32 Download gff for LD31570.complete
Subject Subject Range Query Range Percent Splice Strand
por-RA 39..1848 1..1810 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:04:43 Download gff for LD31570.complete
Subject Subject Range Query Range Percent Splice Strand
X 18378004..18379813 1..1810 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:04:43 Download gff for LD31570.complete
Subject Subject Range Query Range Percent Splice Strand
X 18378004..18379813 1..1810 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:04:43 Download gff for LD31570.complete
Subject Subject Range Query Range Percent Splice Strand
X 18378004..18379813 1..1810 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:27:48 Download gff for LD31570.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18272037..18273846 1..1810 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:30:38 Download gff for LD31570.complete
Subject Subject Range Query Range Percent Splice Strand
X 18386102..18387911 1..1810 100   Minus

LD31570.hyp Sequence

Translation from 0 to 1637

> LD31570.hyp
LGFPGFSLIPPDCIGFGRPAMDYQYFEEESDYIDLDEEEEDDDVVTAGSL
DHRFGQPNGEEDYYFGGDDVEEELVVDGHGVLELAGRLLESLQSCVQPSV
LQVMQYVAPMLLLCLLCRLLCLLYSQRRRLTSLAPLHLFHFACGLIILQI
TVGYRLLLLLLLAAVGYLLLQLLRLGRRGAQVLAVLTVGSQFLYELLIWR
RRSDWPQLRGIQMVVNMKLISLGFDLTASGQLQARIPGPFAYLGYIYSPA
TCALGPWVSFGCYMDCLVPRNSWLVSLRRLLPNVVICVLAVTVSNCVAPA
LSDFFGDSSHFLVMYWDALSVRSSHYFVGMMAQALLVASDQRLDGATKES
DMLGPLISQPWRIEWPRSISSLVRSWNIPMHEWLKRYIYAPCKPTASTSR
GRILVVVLSTYLVSSLLHGMDLRIYLVLISLAFLAEGESLLRRQLASLLN
ACITANLCPGKERCRYSHCPSKRRLNSLSYWLARLTNLAFTALAIFHLAY
LGVVLLGDDLEVGEDGDSFLWHWQQAGYLSHYIGLGTFVLYLFIS*

LD31570.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
por-PC 525 CG6205-PC 1..525 21..545 2738 100 Plus
por-PB 525 CG6205-PB 1..525 21..545 2738 100 Plus
por-PA 525 CG6205-PA 1..525 21..545 2738 100 Plus

LD31570.pep Sequence

Translation from 60 to 1637

> LD31570.pep
MDYQYFEEESDYIDLDEEEEDDDVVTAGSLDHRFGQPNGEEDYYFGGDDV
EEELVVDGHGVLELAGRLLESLQSCVQPSVLQVMQYVAPMLLLCLLCRLL
CLLYSQRRRLTSLAPLHLFHFACGLIILQITVGYRLLLLLLLAAVGYLLL
QLLRLGRRGAQVLAVLTVGSQFLYELLIWRRRSDWPQLRGIQMVVNMKLI
SLGFDLTASGQLQARIPGPFAYLGYIYSPATCALGPWVSFGCYMDCLVPR
NSWLVSLRRLLPNVVICVLAVTVSNCVAPALSDFFGDSSHFLVMYWDALS
VRSSHYFVGMMAQALLVASDQRLDGATKESDMLGPLISQPWRIEWPRSIS
SLVRSWNIPMHEWLKRYIYAPCKPTASTSRGRILVVVLSTYLVSSLLHGM
DLRIYLVLISLAFLAEGESLLRRQLASLLNACITANLCPGKERCRYSHCP
SKRRLNSLSYWLARLTNLAFTALAIFHLAYLGVVLLGDDLEVGEDGDSFL
WHWQQAGYLSHYIGLGTFVLYLFIS*

LD31570.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22511-PA 517 GF22511-PA 1..517 1..525 1658 62.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18128-PA 524 GG18128-PA 1..524 1..525 2187 90.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17785-PA 347 GH17785-PA 1..264 1..267 580 46.4 Plus
Dgri\GH17785-PA 347 GH17785-PA 268..347 439..525 191 51.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:37
Subject Length Description Subject Range Query Range Score Percent Strand
por-PC 525 CG6205-PC 1..525 1..525 2738 100 Plus
por-PB 525 CG6205-PB 1..525 1..525 2738 100 Plus
por-PA 525 CG6205-PA 1..525 1..525 2738 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15128-PA 552 GI15128-PA 1..552 1..525 1237 50.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27041-PA 533 GL27041-PA 1..533 1..525 1424 55.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19439-PA 533 GA19439-PA 1..533 1..525 1424 55.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:33:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22821-PA 525 GM22821-PA 1..525 1..525 2311 94.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15644-PA 296 GD15644-PA 1..213 1..213 748 96.7 Plus
Dsim\GD15644-PA 296 GD15644-PA 213..296 442..525 348 92.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18984-PA 530 GJ18984-PA 1..530 1..525 1250 52.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20006-PA 534 GK20006-PA 1..534 1..525 1310 51.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:33:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15535-PA 525 GE15535-PA 1..525 1..525 2233 92 Plus