Clone LD31571 Report

Search the DGRC for LD31571

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:315
Well:71
Vector:pOT2
Associated Gene/TranscriptmRpL1-RA
Protein status:LD31571.pep: gold
Preliminary Size:1408
Sequenced Size:1225

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7494 2001-01-01 Release 2 assignment
CG7494 2001-07-04 Blastp of sequenced clone
CG7494 2003-01-01 Sim4 clustering to Release 3
mRpL1 2008-04-29 Release 5.5 accounting
mRpL1 2008-08-15 Release 5.9 accounting
mRpL1 2008-12-18 5.12 accounting

Clone Sequence Records

LD31571.complete Sequence

1225 bp (1225 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051800

> LD31571.complete
TTATGCAAAGCGAGAGGTTTGCATTCCAGTAAATAGTAATATTTCTGAAA
GAAATGCAGTCCATTCTGTCTTCAATGAGGGCACTGGCCCTGCGCCAGAG
CACGGTGGAGCCCCTCCGCCTGCTGCATCTTTCCGCCGTGAGCGAGGCGG
CCCGTAAAGGAACTCGGGAGAAGGCCCGCAAGAAGAAAGTCAAGGTGGAA
GTGAAGAAGGTTGGATTCATCCCGCACAACCAGCGCAACAAGAAAATCAA
TGTGAAACGGGCGGACAAACATGTGGATGACTCCTGGAAACAGGTGCCCA
AAGATGACTGCTATGTGGGGCGCTACTACCGCTGGCCAGTGTACTCGGTG
CAGGAAGCTATCCAGTGCCATCGGGAGACGCATCATCCCAGCATGTACAA
CGTACCCAATGCTCCCCTCAATTTGGATATTGAACTCAACATGCAGGCGG
AGAAGATCACACGTTTTGTGGATAACTTCCAGCGCATGGCCATGATTCCA
CACAAGTTTGACCACGGCGAGGAGCGGAAGATCATAGTTTTCACCAAGGG
AAATAATGAAGTCCTGGAGGCCAGGGAAGCTGGCGCCTCGCTAGTCGGCG
GCGTGGAGCTCATTAAGGATATTACCAGCGGCGAGCTGCTGCTCTCCGAC
TACCAGTACGTCATTGCCCATCCGAATATACTGGCCGAGCTGGTGGCCCT
GCGAGGCCTGATGAAACGCAAGTTCCCAAATCCAAAGAGCGAGACGCTGG
GCACCAACCTGGCCGAGATGATCGTCAAATTCTCCAGCGGCATTAGTTAC
AGTGCAGCCAAGGATGAGTACCAGCAAAACTTTGGCCTGATCACCGCCAG
TGTGGGCACTTTGGACATGGATGTCCAGAAGCTTGAGGAGAACATCAAGT
TCCTACTGCAGGATATTAACACTATGAGGCCCAAGCGCGAGGGACGTTTC
ATTACACGTGTCCTGCTGAAGAGCCCGCCAAGCAGTGAGCAGCTGAAAAT
CGATCCCTTTGTCTACGTTCCAGAGATGTGGGACAAGAGCACGGCGAAGG
TGAAAAGGGATGGGGCCAAGAAGCAGACAGAGCCGGCGGAACCCCAAGAA
GCAGTTGCCTCCAATTAGTTAAAACAGAAGCCTATGTATTTTTGTTGATG
GATTGTTTGTGCATACTTTAAACTTACATCTCCTAGAGTCCTAAACAGTC
TAAAAAAAAAAAAAAAAAAAAAAAA

LD31571.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL1-RA 1311 mRpL1-RA 60..1261 1..1202 6010 100 Plus
Gfr-RA 1328 Gfr-RA 1243..1328 1202..1117 430 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4128144..4128790 555..1201 3235 100 Plus
chr3R 27901430 chr3R 4127777..4128086 245..554 1550 100 Plus
chr3R 27901430 chr3R 4127479..4127722 1..244 1220 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:25:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8302124..8302771 555..1202 3240 100 Plus
3R 32079331 3R 8301757..8302066 245..554 1550 100 Plus
3R 32079331 3R 8301459..8301702 1..244 1220 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8042955..8043602 555..1202 3240 100 Plus
3R 31820162 3R 8042588..8042897 245..554 1550 100 Plus
3R 31820162 3R 8042290..8042533 1..244 1220 100 Plus
Blast to na_te.dros performed on 2019-03-15 16:01:56 has no hits.

LD31571.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:02:58 Download gff for LD31571.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4127479..4127722 1..244 100 -> Plus
chr3R 4127777..4128086 245..554 100 -> Plus
chr3R 4128144..4128790 555..1201 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:12:55 Download gff for LD31571.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL1-RA 1..1065 54..1118 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:19:33 Download gff for LD31571.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL1-RA 1..1065 54..1118 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:49:40 Download gff for LD31571.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL1-RA 1..1065 54..1118 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:51:08 Download gff for LD31571.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL1-RA 1..1065 54..1118 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:24:01 Download gff for LD31571.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL1-RA 1..1065 54..1118 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:15:29 Download gff for LD31571.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL1-RA 18..1218 1..1201 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:19:33 Download gff for LD31571.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL1-RA 18..1218 1..1201 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:49:40 Download gff for LD31571.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL1-RA 20..1220 1..1201 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:51:08 Download gff for LD31571.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL1-RA 18..1218 1..1201 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:24:01 Download gff for LD31571.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL1-RA 20..1220 1..1201 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:02:58 Download gff for LD31571.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8301757..8302066 245..554 100 -> Plus
3R 8301459..8301702 1..244 100 -> Plus
3R 8302124..8302770 555..1201 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:02:58 Download gff for LD31571.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8301757..8302066 245..554 100 -> Plus
3R 8301459..8301702 1..244 100 -> Plus
3R 8302124..8302770 555..1201 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:02:58 Download gff for LD31571.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8301757..8302066 245..554 100 -> Plus
3R 8301459..8301702 1..244 100 -> Plus
3R 8302124..8302770 555..1201 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:49:40 Download gff for LD31571.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4127181..4127424 1..244 100 -> Plus
arm_3R 4127479..4127788 245..554 100 -> Plus
arm_3R 4127846..4128492 555..1201 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:29:33 Download gff for LD31571.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8042290..8042533 1..244 100 -> Plus
3R 8042588..8042897 245..554 100 -> Plus
3R 8042955..8043601 555..1201 100   Plus

LD31571.hyp Sequence

Translation from 53 to 1117

> LD31571.hyp
MQSILSSMRALALRQSTVEPLRLLHLSAVSEAARKGTREKARKKKVKVEV
KKVGFIPHNQRNKKINVKRADKHVDDSWKQVPKDDCYVGRYYRWPVYSVQ
EAIQCHRETHHPSMYNVPNAPLNLDIELNMQAEKITRFVDNFQRMAMIPH
KFDHGEERKIIVFTKGNNEVLEAREAGASLVGGVELIKDITSGELLLSDY
QYVIAHPNILAELVALRGLMKRKFPNPKSETLGTNLAEMIVKFSSGISYS
AAKDEYQQNFGLITASVGTLDMDVQKLEENIKFLLQDINTMRPKREGRFI
TRVLLKSPPSSEQLKIDPFVYVPEMWDKSTAKVKRDGAKKQTEPAEPQEA
VASN*

LD31571.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL1-PA 354 CG7494-PA 1..354 1..354 1813 100 Plus

LD31571.pep Sequence

Translation from 53 to 1117

> LD31571.pep
MQSILSSMRALALRQSTVEPLRLLHLSAVSEAARKGTREKARKKKVKVEV
KKVGFIPHNQRNKKINVKRADKHVDDSWKQVPKDDCYVGRYYRWPVYSVQ
EAIQCHRETHHPSMYNVPNAPLNLDIELNMQAEKITRFVDNFQRMAMIPH
KFDHGEERKIIVFTKGNNEVLEAREAGASLVGGVELIKDITSGELLLSDY
QYVIAHPNILAELVALRGLMKRKFPNPKSETLGTNLAEMIVKFSSGISYS
AAKDEYQQNFGLITASVGTLDMDVQKLEENIKFLLQDINTMRPKREGRFI
TRVLLKSPPSSEQLKIDPFVYVPEMWDKSTAKVKRDGAKKQTEPAEPQEA
VASN*

LD31571.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18339-PA 355 GF18339-PA 1..353 1..353 1599 90.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24696-PA 354 GG24696-PA 1..354 1..354 1747 95.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:12:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18673-PA 356 GH18673-PA 1..340 1..340 1516 85.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL1-PA 354 CG7494-PA 1..354 1..354 1813 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:12:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24185-PA 355 GI24185-PA 1..355 1..354 1523 82.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23426-PA 354 GL23426-PA 1..354 1..354 1619 88.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20391-PA 354 GA20391-PA 1..354 1..354 1628 89.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:12:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23720-PA 354 GM23720-PA 1..354 1..354 1883 98.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:12:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10532-PA 353 GJ10532-PA 4..346 5..348 1479 83.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:12:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11393-PA 357 GK11393-PA 1..352 1..352 1548 85.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25864-PA 354 GE25864-PA 1..354 1..354 1840 96.3 Plus