Clone LD31582 Report

Search the DGRC for LD31582

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:315
Well:82
Vector:pOT2
Associated Gene/Transcriptsowah-RI
Protein status:LD31582.pep: gold
Preliminary Size:2165
Sequenced Size:2312

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10632 2001-01-01 Release 2 assignment
CG10632 2001-07-04 Blastp of sequenced clone
CG10632 2003-01-01 Sim4 clustering to Release 3
CG10632 2008-04-29 Release 5.5 accounting
CG10632 2008-08-15 Release 5.9 accounting
CG10632 2008-12-18 5.12 accounting

Clone Sequence Records

LD31582.complete Sequence

2312 bp (2312 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051801

> LD31582.complete
CCCTGGTCAAATGTTTTTGTTTGTTGTGTTTATTTTTTACTTATTTCGCG
TTTAAAAGTGTTTTAAAGTGAGATTTAAAGTGCAATGGAGCTACCGAAGG
AGTTATCCGTTGCGGAGATCCGTAATTACATGTTGGCAAACGAGTGCAAG
GTGACAAATCACGCCTTGGTGAAGCACTTCAAGAAATTCCTAACTCACCC
GCAGTCGCAAAATGAGGCTCGCAAGCGATTCAAGACCTATGTCACACTGC
TGTCCACCATCAAGAACGAGAACAATCAGAAGTTTTTGATATTGCGCAAG
AAATACGTAAACGAATGCCCCACGGATGAGGTTGTGGAGCGCGCGGTGGC
CGCCGCATCTGGTATTCCGGAGCCCTCAAGTCCCGGCGGCGCATCTCTTA
ACTTTGACTCGCCCATGAGGCAGCCACCGCCATATAAACCGCCGCCCATG
GTCACCTCTCCGCCAGCCGTTTCCATTGCCAAGGAGCACCAGGAGAATTA
CCAGGAGTGCGTGGACGAATTCACGGCTGCCATAAAGCGCATTGAGCCAG
CACGCTTGGAGAGGCGAACGTCGGTCAAGTCCGAGGATCTGGATCAGCAG
GAGAAGCCGGAGAAAACGTCTCGATCGAATTCCATCGATGTGATCGACAA
CAAGGAGAACATACCACGTTTCTCCTTCTCCTCGGAGGCCTCCTCGGCGT
CCAGCACTTCCATTGAAAAGCCGGAGATGGCTGATCCCACAGCTCCCGCC
GCCGTAGGCGATGTGGCCGAGAATCCCATCAGCGTGAAGGAGGCCACGCG
CAAATTTAATCGGATGGCGTCTGAAGAAGAGGCTAAAATCATATCGCCGC
CAGCTAAGAAGAAGCCAGAGAAGCAATTAATCGAGGAGAAGGATTCACCG
GAGGTTACGCTGGCGCATCCCAAGGCAAAGGAGTGGATAGTCTCGATGGC
GAAGGCTAATTACCAGGAGCTGGCCAAGATGGCCAGTGAGTATCCGGAAC
TGGTTAAGCTGCAGTGCCCTGCAACGGGCTATACCGCTCTACACTGGGCA
GCGAAGCACGGAAACGAGGATGTGGTTAAACTAATTGCCGGCACCTACAA
GGCGGATGTGAATGCGAGAACGAACGGGGGATACACTCCTCTCCATTTGG
CTACCCAGTTTGGTAGGGATAATATCTTTGAATTACTCTGGAATGTCTAC
AAGGCCAATCGGGACATCATGGACTGGAGCGGCAACAAGCCACTGGACTA
CAGTCGCCAGCGGTCGAGCGTCTCGGCATCGACGTGCAGCAAAATCAAGG
CTCGCAAAAAGCATGCAATCGAAAAAGATTTGGGCTTCCTACGGATTGGT
TCTCTGAATGTCCGGGTAAAGAAGACCACCGAGGCGTTCAGCAACTTCTT
GGGAGTGGGCAATGGCAGTGGGGTGGCGCCGACGGGCTATGGCAATGGCG
GGTCGGCGGTAGCAGCAAATCGCCATCACCCTCGATCTCACCGAGCCCCT
CATCAGCGTCATCATCACCACGTTGGTACGACACGGAGTCGCCATCCGAA
TCAGAGGGCAGCGATGAGCACACCCTATGCCACGAACGGCGGCCTTCCGT
CGAGGGCGAGTGTGCCCAATAGCCGGAACATCTACGATGGGGTGCACAAG
TCGTGGGGATCGGCGGACAATATACCGCATCGATCGGAGGACCTAATGCC
GCCGCCCAAGGCGGTGGAGTATATCAGCAAGCGGAATAAGTCCTCGAAGC
GTTCGTCCTATGCATCGAATACCACCGATTCGCCGCGTGATTCCATCTGC
TCCTCGAACTCCAGCTCGAATCTGAATGGTGGCTATAGCAGCATGCCTAC
GACCCCGAATCAGTTGCGTGCTCCCAAGGGGATCGCCGCATCCTTCGCCG
TGGACTCCGACTCGGACTCCGCCTGCGGATTCGACTCAACCTGGTCGGTC
AATTGTCGCGGTTCCTCGAGCAGCAATCCTTCGCAATCCTAATTACCTGA
ATATTGTTGTTAGCACAGTCTACATACCACCATACAACTTTTAACATTGA
CCATGGAATCGTGAAAGTATTTGTTTTTCAATTAACTAATATATATACTT
TAAGCATTGACCATTATTTAGACGTTACATTTTCTTGTGTTTGTATCTAA
AAGTTTGTATCTTAAAAGTATCCAACATTTGTTATTTCCTATTTTGTGCC
CTTTTCTAGGGACATCCAATATAATGTTTCATTTAATATGTGTATTTTTT
AATCGAAAATAAAGCTTGTATGCTTTTTAATGCATTTATGAATTAAAAAA
AAAAAAAAAAAA

LD31582.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
sowah.a 1188 sowah.a 106..1132 1..1027 5135 100 Plus
sowah.b 2170 sowah.b 106..1119 1..1014 5070 100 Plus
sowah-RD 2613 sowah-RD 106..1119 1..1014 5070 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 12528114..12529094 2294..1314 4890 99.9 Minus
chr3L 24539361 chr3L 12562047..12562708 873..212 3310 100 Minus
chr3L 24539361 chr3L 12562815..12563030 216..1 1065 99.5 Minus
chr3L 24539361 chr3L 12555406..12555548 1014..872 715 100 Minus
chr3L 24539361 chr3L 12530654..12530743 1291..1202 450 100 Minus
chr3L 24539361 chr3L 12531886..12531975 1122..1033 450 100 Minus
chr3L 24539361 chr3L 12530987..12531060 1201..1128 355 98.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:25:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12537511..12538493 2296..1314 4900 99.9 Minus
3L 28110227 3L 12571539..12572200 873..212 3310 100 Minus
3L 28110227 3L 12572307..12572522 216..1 1065 99.5 Minus
3L 28110227 3L 12564899..12565041 1014..872 715 100 Minus
3L 28110227 3L 12540057..12540146 1291..1202 450 100 Minus
3L 28110227 3L 12541288..12541377 1122..1033 450 100 Minus
3L 28110227 3L 12540390..12540463 1201..1128 370 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:53:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 12530611..12531593 2296..1314 4900 99.8 Minus
3L 28103327 3L 12564639..12565300 873..212 3310 100 Minus
3L 28103327 3L 12565407..12565622 216..1 1065 99.5 Minus
3L 28103327 3L 12557999..12558141 1014..872 715 100 Minus
3L 28103327 3L 12534388..12534477 1122..1033 450 100 Minus
3L 28103327 3L 12533157..12533246 1291..1202 450 100 Minus
3L 28103327 3L 12533490..12533563 1201..1128 370 100 Minus
Blast to na_te.dros performed 2019-03-16 19:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 273..470 2289..2099 115 57.9 Minus

LD31582.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:51:22 Download gff for LD31582.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 12562820..12563030 1..211 100   Minus
chr3L 12528114..12529089 1319..2294 100 <- Minus
chr3L 12529151..12529177 1292..1318 100 <- Minus
chr3L 12530654..12530743 1202..1291 100 <- Minus
chr3L 12530987..12531059 1123..1201 91 <- Minus
chr3L 12531886..12531975 1033..1122 100 <- Minus
chr3L 12539038..12539057 1015..1032 75 <- Minus
chr3L 12555406..12555546 874..1014 100 <- Minus
chr3L 12562047..12562708 212..873 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:25:24 Download gff for LD31582.complete
Subject Subject Range Query Range Percent Splice Strand
CG10632-RF 1..1896 85..1992 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:19:35 Download gff for LD31582.complete
Subject Subject Range Query Range Percent Splice Strand
sowah-RI 1..1908 85..1992 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:34:36 Download gff for LD31582.complete
Subject Subject Range Query Range Percent Splice Strand
sowah-RI 1..1908 85..1992 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:51:09 Download gff for LD31582.complete
Subject Subject Range Query Range Percent Splice Strand
CG10632-RF 1..1896 85..1992 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:43:25 Download gff for LD31582.complete
Subject Subject Range Query Range Percent Splice Strand
sowah-RI 1..1908 85..1992 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:25:23 Download gff for LD31582.complete
Subject Subject Range Query Range Percent Splice Strand
CG10632-RC 1..1010 1..1010 100 == Plus
CG10632-RC 1011..2270 1028..2294 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:19:34 Download gff for LD31582.complete
Subject Subject Range Query Range Percent Splice Strand
sowah-RI 1..2294 1..2294 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:36 Download gff for LD31582.complete
Subject Subject Range Query Range Percent Splice Strand
sowah-RI 21..2314 1..2294 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:51:10 Download gff for LD31582.complete
Subject Subject Range Query Range Percent Splice Strand
CG10632-RC 1..1010 1..1010 100 == Plus
CG10632-RC 1011..2270 1028..2294 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:43:25 Download gff for LD31582.complete
Subject Subject Range Query Range Percent Splice Strand
sowah-RI 21..2314 1..2294 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:22 Download gff for LD31582.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12564899..12565039 874..1014 100 <- Minus
3L 12537513..12538488 1319..2294 100 <- Minus
3L 12538550..12538576 1292..1318 100 <- Minus
3L 12540057..12540146 1202..1291 100 <- Minus
3L 12540390..12540462 1123..1201 92 <- Minus
3L 12541288..12541377 1033..1122 100 <- Minus
3L 12548477..12548496 1015..1032 75 <- Minus
3L 12571539..12572200 212..873 100 <- Minus
3L 12572312..12572522 1..211 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:22 Download gff for LD31582.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12564899..12565039 874..1014 100 <- Minus
3L 12537513..12538488 1319..2294 100 <- Minus
3L 12538550..12538576 1292..1318 100 <- Minus
3L 12540057..12540146 1202..1291 100 <- Minus
3L 12540390..12540462 1123..1201 92 <- Minus
3L 12541288..12541377 1033..1122 100 <- Minus
3L 12548477..12548496 1015..1032 75 <- Minus
3L 12571539..12572200 212..873 100 <- Minus
3L 12572312..12572522 1..211 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:22 Download gff for LD31582.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12564899..12565039 874..1014 100 <- Minus
3L 12537513..12538488 1319..2294 100 <- Minus
3L 12538550..12538576 1292..1318 100 <- Minus
3L 12540057..12540146 1202..1291 100 <- Minus
3L 12540390..12540462 1123..1201 92 <- Minus
3L 12541288..12541377 1033..1122 100 <- Minus
3L 12548477..12548496 1015..1032 75 <- Minus
3L 12571539..12572200 212..873 100 <- Minus
3L 12572312..12572522 1..211 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:36 Download gff for LD31582.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12530613..12531588 1319..2294 100 <- Minus
arm_3L 12531650..12531676 1292..1318 100 <- Minus
arm_3L 12533157..12533246 1202..1291 100 <- Minus
arm_3L 12533490..12533562 1123..1201 92 <- Minus
arm_3L 12534388..12534477 1033..1122 100 <- Minus
arm_3L 12541577..12541596 1015..1032 75 <- Minus
arm_3L 12557999..12558139 874..1014 100 <- Minus
arm_3L 12564639..12565300 212..873 100 <- Minus
arm_3L 12565412..12565622 1..211 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:29:35 Download gff for LD31582.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12565412..12565622 1..211 100   Minus
3L 12530613..12531588 1319..2294 100 <- Minus
3L 12531650..12531676 1292..1318 100 <- Minus
3L 12533157..12533246 1202..1291 100 <- Minus
3L 12533490..12533562 1123..1201 92 <- Minus
3L 12534388..12534477 1033..1122 100 <- Minus
3L 12541577..12541596 1015..1032 75 <- Minus
3L 12557999..12558139 874..1014 100 <- Minus
3L 12564639..12565300 212..873 100 <- Minus

LD31582.hyp Sequence

Translation from 84 to 1083

> LD31582.hyp
MELPKELSVAEIRNYMLANECKVTNHALVKHFKKFLTHPQSQNEARKRFK
TYVTLLSTIKNENNQKFLILRKKYVNECPTDEVVERAVAAASGIPEPSSP
GGASLNFDSPMRQPPPYKPPPMVTSPPAVSIAKEHQENYQECVDEFTAAI
KRIEPARLERRTSVKSEDLDQQEKPEKTSRSNSIDVIDNKENIPRFSFSS
EASSASSTSIEKPEMADPTAPAAVGDVAENPISVKEATRKFNRMASEEEA
KIISPPAKKKPEKQLIEEKDSPEVTLAHPKAKEWIVSMAKANYQELAKMA
SEYPELVKLQCPATVSLPLYTGQRSTETRMWLN*

LD31582.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
sowah-PH 527 CG10632-PH 1..314 1..314 1605 100 Plus
sowah-PJ 548 CG10632-PJ 1..314 1..314 1605 100 Plus
sowah-PI 635 CG10632-PI 1..314 1..314 1605 100 Plus
sowah-PG 780 CG10632-PG 1..314 1..314 1605 100 Plus

LD31582.pep Sequence

Translation from 84 to 1991

> LD31582.pep
MELPKELSVAEIRNYMLANECKVTNHALVKHFKKFLTHPQSQNEARKRFK
TYVTLLSTIKNENNQKFLILRKKYVNECPTDEVVERAVAAASGIPEPSSP
GGASLNFDSPMRQPPPYKPPPMVTSPPAVSIAKEHQENYQECVDEFTAAI
KRIEPARLERRTSVKSEDLDQQEKPEKTSRSNSIDVIDNKENIPRFSFSS
EASSASSTSIEKPEMADPTAPAAVGDVAENPISVKEATRKFNRMASEEEA
KIISPPAKKKPEKQLIEEKDSPEVTLAHPKAKEWIVSMAKANYQELAKMA
SEYPELVKLQCPATGYTALHWAAKHGNEDVVKLIAGTYKADVNARTNGGY
TPLHLATQFGRDNIFELLWNVYKANRDIMDWSGNKPLDYSRQRSSVSAST
CSKIKARKKHAIEKDLGFLRIGSLNVRVKKTTEAFSNFLGVGNGSGVAPT
GYGNGGSAVAANRHHPRSHRAPHQRHHHHVGTTRSRHPNQRAAMSTPYAT
NGGLPSRASVPNSRNIYDGVHKSWGSADNIPHRSEDLMPPPKAVEYISKR
NKSSKRSSYASNTTDSPRDSICSSNSSSNLNGGYSSMPTTPNQLRAPKGI
AASFAVDSDSDSACGFDSTWSVNCRGSSSSNPSQS*

LD31582.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25116-PA 767 GF25116-PA 1..393 1..393 1488 76.7 Plus
Dana\GF25116-PA 767 GF25116-PA 532..758 400..626 946 85 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13812-PA 757 GG13812-PA 1..394 1..402 2011 94.5 Plus
Dere\GG13812-PA 757 GG13812-PA 523..757 403..635 1185 93.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16838-PA 311 GH16838-PA 2..307 317..631 1265 80.4 Plus
Dgri\GH16837-PA 298 GH16837-PA 8..273 5..254 701 58.6 Plus
Dgri\GH11486-PA 323 GH11486-PA 201..284 316..399 159 41.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
sowah-PI 635 CG10632-PI 1..635 1..635 3316 100 Plus
sowah-PH 527 CG10632-PH 1..408 1..408 2096 99.3 Plus
sowah-PG 780 CG10632-PG 1..479 1..474 2091 86.7 Plus
sowah-PJ 548 CG10632-PJ 1..479 1..474 2091 86.7 Plus
sowah-PG 780 CG10632-PG 548..780 403..635 1231 99.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13059-PA 318 GI13059-PA 1..314 317..631 1113 76.6 Plus
Dmoj\GI13058-PA 313 GI13058-PA 8..298 5..254 661 52.6 Plus
Dmoj\GI16982-PA 182 GI16982-PA 60..140 316..396 160 45.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24938-PA 581 GL24938-PA 1..581 1..635 2068 72.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:13:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10454-PA 756 GA10454-PA 1..398 1..402 1623 79.7 Plus
Dpse\GA10454-PA 756 GA10454-PA 527..756 403..635 871 80.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24639-PA 740 GM24639-PA 1..355 1..393 1656 88.5 Plus
Dsec\GM24639-PA 740 GM24639-PA 508..740 403..635 1194 97.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:13:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12705-PA 813 GD12705-PA 1..432 1..393 1758 85.5 Plus
Dsim\GD12705-PA 813 GD12705-PA 585..813 403..635 1160 96.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13806-PA 802 GJ13806-PA 8..417 5..402 1411 68.3 Plus
Dvir\GJ13806-PA 802 GJ13806-PA 569..798 400..631 773 72.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10564-PA 316 GK10564-PA 6..312 317..623 1092 75.7 Plus
Dwil\GK10563-PA 287 GK10563-PA 1..286 1..310 794 59.7 Plus
Dwil\GK13551-PA 109 GK13551-PA 1..105 288..392 405 70.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20106-PA 582 GE20106-PA 1..573 1..626 2632 86.5 Plus