Clone LD31602 Report

Search the DGRC for LD31602

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:316
Well:2
Vector:pOT2
Associated Gene/Transcriptspin-RC
Protein status:LD31602.pep: gold
Sequenced Size:2985

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
spin 2008-04-29 Picked prior to 5.5
spin 2008-08-15 Release 5.9 accounting
spin 2008-12-18 5.12 accounting

Clone Sequence Records

LD31602.complete Sequence

2985 bp assembled on 2008-05-14

GenBank Submission: BT032842

> LD31602.complete
TGTTCGCGTCGCGGAAGAAACAAGAAAGAAAAACAGCGAGAAGCACTGCA
AATGCATTGGCTGCATTTAAAGAACAACCGCGATTAGAGGAAGTGTCTCA
GTACACAGTCGAATTAGCCATACAAATTGGCAAAAGTGTTATAAAAGAGA
AGCGCGGTGGTGTGCCAACAGCCCAAGAGCAAATTCTTTTGCATTCGCTT
TTGAACCGCTTTCATCGCGAGTTCCCGTTTCTCTGTGTGCGTGAGCAAAG
AGCGTGTGCAAATAACTTTTTGCCGCGTTGTCCGCCTGCTGCGAATTTCC
AACCGAAAGAGGACAGCGAGAGCGCGAGAAGAGAAGAGAGGATCGAGTGA
TCGGGTGAATGTCGCTGAAACACCAGAAGCAATCCTACCAACCGCTCCCA
ACGGCGGCCGCCATGGACAATCCGGCGATGATCCAGAGCAGCGGTAGCAG
TGGGAGCAGCTCCTCTGAGGAGGGCGGGAGTCGTGAGGATGTGGCCAATC
TATCGCCGCTCGGACTGCCTACGACCTACTCGTCACAGCAATTGATGCCC
TCGGATACGGACAGCATGGAGGAGGAGCGGCACCGACTGCGTCCCCACCA
CCATCACCACCACCCACTGGGCGAGCACCACCACATCCCGGGCATACCAC
CATCCGCCGTCGTGCCATCGCGTCTCTCCAGCGTGGGCAGATCGCAGTGG
TTCACCGTTACCGTGCTATGCTTCGTCAACCTCATCAACTACATGGATCG
CTTTACGATCGCAGGAGTTCTCACAGATGTCCGAAATGATTTCGATATTG
GCAATGATAGTGCCGGACTTCTCCAGACGGTCTTCGTTATCTCGTACATG
GTATGCGCCCCCATCTTCGGCTATCTGGGCGATCGTTACTCCCGCCCCTG
GATAATGGCGGTGGGCGTGGGTCTGTGGAGCACCACCACCCTACTGGGGT
CGTTCATGAAGCAGTTTGGATGGTTCATCGCCTTCAGAGCGCTGGTCGGG
ATCGGCGAGGCATCGTACAGTACCATCGCACCGACGATTATCTCGGATCT
GTTCGTGCACGACATGCGCTCCAAGATGCTGGCACTGTTCTACTTTGCCA
TACCCGTGGGATCCGGTCTGGGATACATTGTGGGATCCAAGACAGCGCAC
CTGGCCAACGATTGGCGCTGGGCTCTGAGGGTCACGCCCATTCTGGGCAT
TGTGGCAGTTTTCCTCATTTTGCTGATCAAGGATCCGGTGCGGGGTCACA
GCGAGGGATCGCACAATTTGGAGGCCACTACCTACAAGCAGGACATCAAG
GCGTTGGTCAGGAACCGTTCCTTCATGCTCTCCACGGCTGGATTCACGTG
CGTTGCCTTCGTGGCCGGAGCACTGGCCTGGTGGGGACCTTCCTTCATCT
ATCTAGGCATGAAGATGCAGCCCGGCAACGAGAACATTGTCCAGGACGAC
ATCTCGTACAAGTTTGGTCTGGTGGCCATGTTGGCCGGACTCATCGGAGT
CCCGTTGGGCTCCTTTCTGGCCCAGCGATTGAGGGGTCGCTACGAGAACT
GTGATCCGTACATCTGTGCGGTGGGACTTTTCATCTCGGCTCCGATGGTC
TTCGCTGCTCTCGTGGTGCCGCAGACAAGCGAGAGCCTCTGCTTTTTCTT
CGTTTTCGTGGCCCAGGTGGCACTGAACCTGTGCTGGTCCATTGTAGCCG
ACATCCTACTGTATGTGGTGGTTCCCACGCGACGTTCAACAGCCGAGGCC
TTCCAAATCCTCATCTCACACGCACTCGGTGATGCCGGCAGTCCGTATTT
GGTTGGAGCAATCTCCGAGGCCATCATGAAACACCTGCACAAGAACCCCA
GCGACTCTGGACTGACCACCGAGCTGCGAAGCATGTCCCAAGTGGCAGGT
TCCGCGATCAGTAATGCCACCCAGGTGATCGCGGAAGCCACCACCAGTTT
GATGGAAACAGCACGCTCGTCAGCCTCTCAGGAATACTCTGATGTGGAGC
AATTCGAGGGACTGCAATATGCGCTCTTCTCCACCAGTTTTGTGGAGGTG
CTGGGCGGCATTTTCTTCATATTCACCGCCTGCTTTATCATCAAAGACAA
GTACAATGCCACACGAGGACTGCAAGATGCCACGGCTCAGCAACAGCAGC
GGGATGAGCGCGGTCAGATTGCCTAATACCAGCCGATTCTGGAGGTTATG
CTGCGCACTCAGAGCTCCGATGGCATGCCGGGTGAACTGATACTGACTGA
AAACCATCTTTAATTTAATTTACGGTCACTCGCACCACGCACATCCCGCA
TCGGATCGTACTGGAAGCTTACGGGGACGGGGACACCTTGCTCAGTTGGG
CGGACAAGTTCCCGATGTTCATGTTCCTATTGGAAGGGATCGGAGGAAGG
AGGAAAATGGGGGAAAGGACCACCATGCCAACACGTTCAAGCACGCCACA
CCGATTTGTAGATATATATACAAACAAAATCAAAAACTCTCACCCAGGCA
CTCACTCACTCACCAAGTCATAACATAACACAGATCATTTTACTTGTAAA
CGTCAAAGGTCTTGGGTACCCAGGATACCTTGCTTCACCCACGTAGTCGT
AGATAGGTCTAGCTCTGGTATTTTAGACTAAATCAAAATTAGCAAGAGTT
TCAAGCGGACTCGCATTCGAAGAAGTGCTCCCTCAGATCGGATAATGTAA
ATAGATTATCTCAGGCATCGAATGCGTAGGTCGTGCAGTTTGGATATTTA
TATTAACGAATGTATATTTAATATGAATTGTAAATATAGATAAGCACCGG
GCCATTGTATAAGTGCGTAGTCTATTTAATCAATTTTATCATAACGCCTT
AGTTTTACACTGAACATAATTTTAATCATAGCCTTAGTTAGTTGTGTAAC
GAATTGGAGAAATGTGTGCACCCTCAGCAATTACTGAATATTACAGCAAA
ACTATTTTGAACCAAAAAAAAAAAAAAAAAAAAAA

LD31602.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
spin-RC 3225 spin-RC 47..3013 1..2967 14835 100 Plus
spin-RB 3420 spin-RB 46..2171 1..2126 10630 100 Plus
spin-RD 3400 spin-RD 37..1485 1..1449 7245 100 Plus
spin-RB 3420 spin-RB 2367..3208 2126..2967 4210 100 Plus
spin-RD 3400 spin-RD 2358..3199 2126..2967 4210 100 Plus
spin-RD 3400 spin-RD 1727..2162 1691..2126 2120 99 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12024534..12025372 2125..2963 4150 99.6 Plus
chr2R 21145070 chr2R 12012372..12013136 1..765 3765 99.5 Plus
chr2R 21145070 chr2R 12018887..12019247 762..1122 1805 100 Plus
chr2R 21145070 chr2R 12019656..12019983 1122..1449 1595 99.1 Plus
chr2R 21145070 chr2R 12020177..12020438 1450..1711 1310 100 Plus
chr2R 21145070 chr2R 12023518..12023691 1811..1984 840 98.9 Plus
chr2R 21145070 chr2R 12023756..12023897 1985..2126 680 98.6 Plus
chr2R 21145070 chr2R 12023354..12023453 1711..1810 500 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:25:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16137203..16138045 2125..2967 4215 100 Plus
2R 25286936 2R 16125019..16125783 1..765 3825 100 Plus
2R 25286936 2R 16131539..16131899 762..1122 1805 100 Plus
2R 25286936 2R 16132308..16132635 1122..1449 1640 100 Plus
2R 25286936 2R 16132829..16133090 1450..1711 1310 100 Plus
2R 25286936 2R 16136187..16136360 1811..1984 870 100 Plus
2R 25286936 2R 16136425..16136566 1985..2126 710 100 Plus
2R 25286936 2R 16136026..16136125 1711..1810 500 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16138402..16139244 2125..2967 4215 100 Plus
2R 25260384 2R 16126218..16126982 1..765 3825 100 Plus
2R 25260384 2R 16132738..16133098 762..1122 1805 100 Plus
2R 25260384 2R 16133507..16133834 1122..1449 1640 100 Plus
2R 25260384 2R 16134028..16134289 1450..1711 1310 100 Plus
2R 25260384 2R 16137386..16137559 1811..1984 870 100 Plus
2R 25260384 2R 16137624..16137765 1985..2126 710 100 Plus
2R 25260384 2R 16137225..16137324 1711..1810 500 100 Plus
Blast to na_te.dros performed on 2019-03-16 01:17:30 has no hits.

LD31602.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:18:33 Download gff for LD31602.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12012372..12013135 1..764 99 -> Plus
chr2R 12018890..12019247 765..1122 100 -> Plus
chr2R 12019657..12019983 1123..1449 99 -> Plus
chr2R 12020177..12020438 1450..1711 100 -> Plus
chr2R 12023355..12023453 1712..1810 100 -> Plus
chr2R 12023518..12023691 1811..1984 98 -> Plus
chr2R 12023756..12023897 1985..2126 98 -> Plus
chr2R 12024536..12025372 2127..2963 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:49:37 Download gff for LD31602.complete
Subject Subject Range Query Range Percent Splice Strand
spin-RC 1..1818 359..2176 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:49:03 Download gff for LD31602.complete
Subject Subject Range Query Range Percent Splice Strand
spin-RC 1..1818 359..2176 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:04:27 Download gff for LD31602.complete
Subject Subject Range Query Range Percent Splice Strand
spin-RC 1..1818 359..2176 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:48:28 Download gff for LD31602.complete
Subject Subject Range Query Range Percent Splice Strand
spin-RC 1..1818 359..2176 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:30:08 Download gff for LD31602.complete
Subject Subject Range Query Range Percent Splice Strand
spin-RC 1..1818 359..2176 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:49:36 Download gff for LD31602.complete
Subject Subject Range Query Range Percent Splice Strand
spin-RC 37..2999 1..2963 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:49:03 Download gff for LD31602.complete
Subject Subject Range Query Range Percent Splice Strand
spin-RC 37..2999 1..2963 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:04:27 Download gff for LD31602.complete
Subject Subject Range Query Range Percent Splice Strand
spin-RC 39..3001 1..2963 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:48:29 Download gff for LD31602.complete
Subject Subject Range Query Range Percent Splice Strand
spin-RC 37..2999 1..2963 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:30:08 Download gff for LD31602.complete
Subject Subject Range Query Range Percent Splice Strand
spin-RC 39..3001 1..2963 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:18:33 Download gff for LD31602.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16125019..16125782 1..764 100 -> Plus
2R 16131542..16131899 765..1122 100 -> Plus
2R 16132309..16132635 1123..1449 100 -> Plus
2R 16132829..16133090 1450..1711 100 -> Plus
2R 16136027..16136125 1712..1810 100 -> Plus
2R 16136187..16136360 1811..1984 100 -> Plus
2R 16136425..16136566 1985..2126 100 -> Plus
2R 16137205..16138041 2127..2963 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:18:33 Download gff for LD31602.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16125019..16125782 1..764 100 -> Plus
2R 16131542..16131899 765..1122 100 -> Plus
2R 16132309..16132635 1123..1449 100 -> Plus
2R 16132829..16133090 1450..1711 100 -> Plus
2R 16136027..16136125 1712..1810 100 -> Plus
2R 16136187..16136360 1811..1984 100 -> Plus
2R 16136425..16136566 1985..2126 100 -> Plus
2R 16137205..16138041 2127..2963 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:18:33 Download gff for LD31602.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16125019..16125782 1..764 100 -> Plus
2R 16131542..16131899 765..1122 100 -> Plus
2R 16132309..16132635 1123..1449 100 -> Plus
2R 16132829..16133090 1450..1711 100 -> Plus
2R 16136027..16136125 1712..1810 100 -> Plus
2R 16136187..16136360 1811..1984 100 -> Plus
2R 16136425..16136566 1985..2126 100 -> Plus
2R 16137205..16138041 2127..2963 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:04:27 Download gff for LD31602.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12012524..12013287 1..764 100 -> Plus
arm_2R 12019047..12019404 765..1122 100 -> Plus
arm_2R 12019814..12020140 1123..1449 100 -> Plus
arm_2R 12020334..12020595 1450..1711 100 -> Plus
arm_2R 12023532..12023630 1712..1810 100 -> Plus
arm_2R 12023692..12023865 1811..1984 100 -> Plus
arm_2R 12023930..12024071 1985..2126 100 -> Plus
arm_2R 12024710..12025546 2127..2963 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:28:11 Download gff for LD31602.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16137386..16137559 1811..1984 100 -> Plus
2R 16137624..16137765 1985..2126 100 -> Plus
2R 16137226..16137324 1712..1810 100 -> Plus
2R 16126218..16126981 1..764 100 -> Plus
2R 16132741..16133098 765..1122 100 -> Plus
2R 16133508..16133834 1123..1449 100 -> Plus
2R 16134028..16134289 1450..1711 100 -> Plus
2R 16138404..16139240 2127..2963 100   Plus

LD31602.pep Sequence

Translation from 358 to 2175

> LD31602.pep
MSLKHQKQSYQPLPTAAAMDNPAMIQSSGSSGSSSSEEGGSREDVANLSP
LGLPTTYSSQQLMPSDTDSMEEERHRLRPHHHHHHPLGEHHHIPGIPPSA
VVPSRLSSVGRSQWFTVTVLCFVNLINYMDRFTIAGVLTDVRNDFDIGND
SAGLLQTVFVISYMVCAPIFGYLGDRYSRPWIMAVGVGLWSTTTLLGSFM
KQFGWFIAFRALVGIGEASYSTIAPTIISDLFVHDMRSKMLALFYFAIPV
GSGLGYIVGSKTAHLANDWRWALRVTPILGIVAVFLILLIKDPVRGHSEG
SHNLEATTYKQDIKALVRNRSFMLSTAGFTCVAFVAGALAWWGPSFIYLG
MKMQPGNENIVQDDISYKFGLVAMLAGLIGVPLGSFLAQRLRGRYENCDP
YICAVGLFISAPMVFAALVVPQTSESLCFFFVFVAQVALNLCWSIVADIL
LYVVVPTRRSTAEAFQILISHALGDAGSPYLVGAISEAIMKHLHKNPSDS
GLTTELRSMSQVAGSAISNATQVIAEATTSLMETARSSASQEYSDVEQFE
GLQYALFSTSFVEVLGGIFFIFTACFIIKDKYNATRGLQDATAQQQQRDE
RGQIA*

LD31602.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:03:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11295-PA 712 GF11295-PA 1..436 1..449 1887 81.5 Plus
Dana\GF11295-PA 712 GF11295-PA 446..671 365..587 720 61.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:03:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20571-PA 605 GG20571-PA 1..605 1..605 3156 97.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:03:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22071-PA 576 GH22071-PA 1..557 1..599 1997 67.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
spin-PC 605 CG8428-PC 1..605 1..605 3120 100 Plus
spin-PB 630 CG8428-PB 1..598 1..598 3043 98.8 Plus
spin-PA 605 CG8428-PA 1..605 1..605 2906 92.9 Plus
spin-PD 630 CG8428-PD 1..598 1..598 2829 91.6 Plus
spin-PE 402 CG8428-PE 1..365 1..365 1918 99.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19157-PA 590 GI19157-PA 1..543 1..585 1927 66.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:03:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20621-PA 609 GL20621-PA 1..574 1..586 2368 77.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:03:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21072-PB 591 GA21072-PB 1..589 1..601 2394 76.7 Plus
Dpse\GA21072-PA 609 GA21072-PA 1..576 1..588 2367 77.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:03:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21663-PA 605 GM21663-PA 1..605 1..605 3203 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11163-PA 710 GD11163-PA 1..451 1..451 2436 99.1 Plus
Dsim\GD11163-PA 710 GD11163-PA 472..710 367..605 1009 81.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22291-PA 668 GJ22291-PA 1..447 1..492 1604 66.7 Plus
Dvir\GJ22291-PA 668 GJ22291-PA 418..630 365..585 607 55.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:03:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21866-PA 699 GK21866-PA 1..612 1..587 2176 71 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:03:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11757-PA 738 GE11757-PA 1..451 1..451 2427 99.1 Plus
Dyak\GE11757-PA 738 GE11757-PA 498..738 365..605 989 78.4 Plus

LD31602.hyp Sequence

Translation from 358 to 2175

> LD31602.hyp
MSLKHQKQSYQPLPTAAAMDNPAMIQSSGSSGSSSSEEGGSREDVANLSP
LGLPTTYSSQQLMPSDTDSMEEERHRLRPHHHHHHPLGEHHHIPGIPPSA
VVPSRLSSVGRSQWFTVTVLCFVNLINYMDRFTIAGVLTDVRNDFDIGND
SAGLLQTVFVISYMVCAPIFGYLGDRYSRPWIMAVGVGLWSTTTLLGSFM
KQFGWFIAFRALVGIGEASYSTIAPTIISDLFVHDMRSKMLALFYFAIPV
GSGLGYIVGSKTAHLANDWRWALRVTPILGIVAVFLILLIKDPVRGHSEG
SHNLEATTYKQDIKALVRNRSFMLSTAGFTCVAFVAGALAWWGPSFIYLG
MKMQPGNENIVQDDISYKFGLVAMLAGLIGVPLGSFLAQRLRGRYENCDP
YICAVGLFISAPMVFAALVVPQTSESLCFFFVFVAQVALNLCWSIVADIL
LYVVVPTRRSTAEAFQILISHALGDAGSPYLVGAISEAIMKHLHKNPSDS
GLTTELRSMSQVAGSAISNATQVIAEATTSLMETARSSASQEYSDVEQFE
GLQYALFSTSFVEVLGGIFFIFTACFIIKDKYNATRGLQDATAQQQQRDE
RGQIA*

LD31602.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
spin-PC 605 CG8428-PC 1..605 1..605 3120 100 Plus
spin-PB 630 CG8428-PB 1..598 1..598 3043 98.8 Plus
spin-PA 605 CG8428-PA 1..605 1..605 2906 92.9 Plus
spin-PD 630 CG8428-PD 1..598 1..598 2829 91.6 Plus
spin-PE 402 CG8428-PE 1..365 1..365 1918 99.7 Plus