Clone LD31675 Report

Search the DGRC for LD31675

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:316
Well:75
Vector:pOT2
Associated Gene/TranscriptCycY-RA
Protein status:LD31675.pep: gold
Preliminary Size:2324
Sequenced Size:2139

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14939 2001-01-01 Release 2 assignment
CG14939 2001-11-29 Blastp of sequenced clone
CG14939 2003-01-01 Sim4 clustering to Release 3
CG14939 2008-04-29 Release 5.5 accounting
CG14939 2008-08-15 Release 5.9 accounting
CG14939 2008-12-18 5.12 accounting

Clone Sequence Records

LD31675.complete Sequence

2139 bp (2139 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069580

> LD31675.complete
AAAATACGATACATTTCATTTTCGAGCAGCAAACGCTCGACGACGGGCAG
CGGTAATTGTGGAGCGATAGAAACGCCAGCGCCATGCCCATAGACATAGA
CGCACGACGACCAAGTGCCAAAAGCGAGAACCGAGCGTGAGCGACTGCCA
GGAGCAGGATCCGTAACCACGGGGTCCATCCGCTAGTCAAGAGAGAGTGA
GCAAGCGAGCGAGTGAGTGCCAAGCCAAGTTTGCATTTAGTTTGAGCGCC
CGACCAACCGAACCAATCCGAAACGGCAAAATGGGCAACAAGAACTCGTG
CTGCGCGTACTCCAGTCCGCAGTCGGACCGCAAGTCTAAGGACATGCCGC
CCGTCTTCGAGGAGCGGATTATCCAGCTGGGTCATCCGCCGCACACGTCA
CAGCACCAGTTGGACGGCCACCATGGATCCGCGTCGGCGGTGCACCTGCA
TCACCATCATCACGGCCACAATCAGCAACAGAATCAGCAGGGTGGCGGCG
GTGACAACTATGAGAACCAGCAGAATCTGCAGCACATCTCCGAGCGAGAG
GCGCTGGAGGGCGAGGAGGATCCGTCGGTCGATCCCACTGCAGCCACCAT
GTTCCTGGAACGATCAAAGGTGGAGAACGGCGGCATGACGCGCAAGCGTT
CGCAACAGCAGATTGCCCAGCAGGCGGGCAGCGGCGGCGGAGGAGGCGGC
GGCGGTGGCGGCGGCAGTACTCCCGGTGGCAATAGTTGCGGCGGTGGTGG
CGGCATGAAGAAGAGCTCCTCCTGCTCGACGATCTATCTGGACGACAGCA
CTGTGTCGCAGCCGAATCTTAAGAATACGGTCAAATGCGTCTCACTGGCC
ATTTACTATCACATCAAGAATCGGCAATCGGATCGCCGGCTGGACATCTT
CGACGAGAAGCTTCATCCGCTGACCCACGACCAGGTGCCGGATAACTATG
ACACGCACAATCCGGAACACCGGCAGATCTACAAGTTCGTGCGCACGCTC
TTTAACGCCGCCCAGCTGACGGCCGAGTGTGCGATCATCACGCTAGTCTA
CCTGGAGCGGCTACTCACCTACGCCGAGCTGGATGTGGGACCCTGCAACT
GGAAGCGCATGGTGTTGGGTGCCATTCTCCTCGCCTCAAAGGTGTGGGAT
GACCAGGCCGTTTGGAATGTAGATTACTGCCAAATACTCAAAGACATCAC
CGTGGAGGACATGAACGAGCTGGAGCGCCAGTTCCTCGAGCTGCTGCAGT
TCAACATCAATGTACCGTCCTCGGTGTACGCCAAATACTACTTCGACCTG
CGCACGCTCGCCGAGGCCAACGAGCTCAACTTCCCCACGGAGCCGCTGTC
CAAGGAGCGGGCCCAGAAGCTGGAGGCCATGTCGCGTGTGATGCAGGACA
AGGTCACTGCCGAGGCACTGAAGAATGGGATCAAGAAGTGGTCCTCCATG
GACAACATCAGTCAGGGCGGGCCGCGACGCAGCGTGGCCATACTATCGTG
ATTTATATTAGCTTACTAAAACCGAACAACCAACCAACAGCAGCAATGAG
ATCCGTACTCTGTAGTCCGTAGTCCGATCGAACGTCATTTGAGAACCGTA
GCTCTGCGCTGAATCAGATTTTGCACACAGATTCAGATACATTTCGTAGG
CCACCCGGTTGCATAAGCTTTTGCGGGTGGCTTTTTAGCCAGCACACAGA
CTCTAAAAGGAACACCCAAATACGTGCAGAAAGAATCACAGTCTTATATA
CAATATATACATACACGAAGAAAAGCGTTTTAACCACACGTCTCGAATTA
AGGACCACTTTTTACATATACGTACATGCGATCGATGTATGTAAGCGAAA
CTACCGATGCAGTCATGGATTTGGATGATGATTTTAAACAGAGACACAGA
AGTACTACTACAGCAACGCGTAACCAATTGCCAAACGAAAGATCACAGAA
GCAGAAAGAGATACAGAAACCTAAACCGAACAGTAGAGAATTGTTTGTAC
AAAACGGCTTAAATAATATTGTAATTGACTTGGCCACCTAATCCAGCTGG
CATCTAAGCAATTTAATCTCAACGGTTGGCCACGGCCACCAAATTGTCAT
TTACTTAGCGCGTCCGCGCCCAAAAAAAAAAAAAAAAAA

LD31675.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:55:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14939-RA 2591 CG14939-RA 48..2186 1..2139 10665 99.9 Plus
CG14939.a 3085 CG14939.a 589..2698 30..2139 10520 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 11810235..11811330 1121..26 5480 100 Minus
chr2L 23010047 chr2L 11809141..11810144 2121..1118 5005 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:25:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11811591..11812686 1121..26 5480 100 Minus
2L 23513712 2L 11810479..11811500 2139..1118 5080 99.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11811591..11812686 1121..26 5480 100 Minus
2L 23513712 2L 11810479..11811500 2139..1118 5080 99.8 Minus
2L 23513712 2L 11813725..11813753 29..1 145 100 Minus
Blast to na_te.dros performed 2019-03-16 04:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 6619..6713 1921..2014 121 61.5 Plus
accord2 7650 accord2 QBERT 7650bp 5523..5616 1773..1683 120 61.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6898 383..490 116 60 Plus

LD31675.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:14:17 Download gff for LD31675.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 11809141..11810143 1119..2121 99 <- Minus
chr2L 11810238..11811326 30..1118 96 <- Minus
chr2L 11812370..11812398 1..29 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:13:05 Download gff for LD31675.complete
Subject Subject Range Query Range Percent Splice Strand
CG14939-RA 1..1221 281..1501 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:27:06 Download gff for LD31675.complete
Subject Subject Range Query Range Percent Splice Strand
CycY-RA 1..1221 281..1501 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:21:57 Download gff for LD31675.complete
Subject Subject Range Query Range Percent Splice Strand
CycY-RA 1..1221 281..1501 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:54:32 Download gff for LD31675.complete
Subject Subject Range Query Range Percent Splice Strand
CG14939-RA 1..1221 281..1501 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:31:59 Download gff for LD31675.complete
Subject Subject Range Query Range Percent Splice Strand
CycY-RA 1..1221 281..1501 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:03:48 Download gff for LD31675.complete
Subject Subject Range Query Range Percent Splice Strand
CG14939-RA 48..2168 1..2121 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:27:06 Download gff for LD31675.complete
Subject Subject Range Query Range Percent Splice Strand
CycY-RA 48..2168 1..2121 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:21:57 Download gff for LD31675.complete
Subject Subject Range Query Range Percent Splice Strand
CycY-RA 28..2148 1..2121 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:54:32 Download gff for LD31675.complete
Subject Subject Range Query Range Percent Splice Strand
CG14939-RA 48..2168 1..2121 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:31:59 Download gff for LD31675.complete
Subject Subject Range Query Range Percent Splice Strand
CycY-RA 28..2148 1..2121 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:14:17 Download gff for LD31675.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11810497..11811499 1119..2121 100 <- Minus
2L 11811594..11812682 30..1118 100 <- Minus
2L 11813725..11813753 1..29 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:14:17 Download gff for LD31675.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11810497..11811499 1119..2121 100 <- Minus
2L 11811594..11812682 30..1118 100 <- Minus
2L 11813725..11813753 1..29 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:14:17 Download gff for LD31675.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11810497..11811499 1119..2121 100 <- Minus
2L 11811594..11812682 30..1118 100 <- Minus
2L 11813725..11813753 1..29 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:21:57 Download gff for LD31675.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11810497..11811499 1119..2121 100 <- Minus
arm_2L 11811594..11812682 30..1118 100 <- Minus
arm_2L 11813725..11813753 1..29 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:30:40 Download gff for LD31675.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11810497..11811499 1119..2121 100 <- Minus
2L 11811594..11812682 30..1118 100 <- Minus
2L 11813725..11813753 1..29 100   Minus

LD31675.pep Sequence

Translation from 280 to 1500

> LD31675.pep
MGNKNSCCAYSSPQSDRKSKDMPPVFEERIIQLGHPPHTSQHQLDGHHGS
ASAVHLHHHHHGHNQQQNQQGGGGDNYENQQNLQHISEREALEGEEDPSV
DPTAATMFLERSKVENGGMTRKRSQQQIAQQAGSGGGGGGGGGGGSTPGG
NSCGGGGGMKKSSSCSTIYLDDSTVSQPNLKNTVKCVSLAIYYHIKNRQS
DRRLDIFDEKLHPLTHDQVPDNYDTHNPEHRQIYKFVRTLFNAAQLTAEC
AIITLVYLERLLTYAELDVGPCNWKRMVLGAILLASKVWDDQAVWNVDYC
QILKDITVEDMNELERQFLELLQFNINVPSSVYAKYYFDLRTLAEANELN
FPTEPLSKERAQKLEAMSRVMQDKVTAEALKNGIKKWSSMDNISQGGPRR
SVAILS*

LD31675.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:16:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23396-PA 402 GF23396-PA 1..402 1..406 2054 95.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:16:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10296-PA 402 GG10296-PA 1..402 1..406 2060 95.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13072-PA 404 GH13072-PA 1..404 1..406 1814 88.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
CycY-PB 406 CG14939-PB 1..406 1..406 2161 100 Plus
CycY-PA 406 CG14939-PA 1..406 1..406 2161 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17691-PA 401 GI17691-PA 1..401 1..406 1791 87.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15279-PA 395 GL15279-PA 1..395 1..406 1809 88.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13366-PA 395 GA13366-PA 1..395 1..406 1809 88.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:16:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10957-PA 404 GM10957-PA 1..404 1..406 2182 99.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:16:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22156-PA 404 GD22156-PA 1..404 1..406 2182 99.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17477-PA 393 GJ17477-PA 1..393 1..406 1876 89 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:16:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14972-PA 407 GK14972-PA 1..407 1..406 1818 90 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12676-PA 400 GE12676-PA 1..400 1..406 2117 97.3 Plus

LD31675.hyp Sequence

Translation from 280 to 1500

> LD31675.hyp
MGNKNSCCAYSSPQSDRKSKDMPPVFEERIIQLGHPPHTSQHQLDGHHGS
ASAVHLHHHHHGHNQQQNQQGGGGDNYENQQNLQHISEREALEGEEDPSV
DPTAATMFLERSKVENGGMTRKRSQQQIAQQAGSGGGGGGGGGGGSTPGG
NSCGGGGGMKKSSSCSTIYLDDSTVSQPNLKNTVKCVSLAIYYHIKNRQS
DRRLDIFDEKLHPLTHDQVPDNYDTHNPEHRQIYKFVRTLFNAAQLTAEC
AIITLVYLERLLTYAELDVGPCNWKRMVLGAILLASKVWDDQAVWNVDYC
QILKDITVEDMNELERQFLELLQFNINVPSSVYAKYYFDLRTLAEANELN
FPTEPLSKERAQKLEAMSRVMQDKVTAEALKNGIKKWSSMDNISQGGPRR
SVAILS*

LD31675.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
CycY-PB 406 CG14939-PB 1..406 1..406 2161 100 Plus
CycY-PA 406 CG14939-PA 1..406 1..406 2161 100 Plus