Clone LD31680 Report

Search the DGRC for LD31680

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:316
Well:80
Vector:pOT2
Associated Gene/Transcriptash2-RC
Protein status:LD31680.pep: gold
Preliminary Size:2051
Sequenced Size:1922

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6677 2001-01-01 Release 2 assignment
CG6677 2001-07-04 Blastp of sequenced clone
CG6677 2003-01-01 Sim4 clustering to Release 3
ash2 2008-04-29 Release 5.5 accounting
ash2 2008-08-15 Release 5.9 accounting
ash2 2008-12-18 5.12 accounting

Clone Sequence Records

LD31680.complete Sequence

1922 bp (1922 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051803

> LD31680.complete
CGGGCCGCTAATATTTGTTTACATGCTAATTGTTGACTGAAAACCTTTAT
CACTGCAATGGAGGACAGCCAAATGGACACAAGCTCGCCGACAGAGTCCA
GCTCCGAGGTGAACTTCACTGCGGAGGAGGATAAATCGCAGGAAACGCGT
TCCGCAGCCGGCGTTTGTTACTGCGGCAAGGAGCGCAATCTCAATATTGT
GGAGCTGCTGTGTGCCACCTGTTCACGCTGGGTGCACGAGACCTGCGTTT
CCTACCAGCTTGGTAAGGGTAAACTTCTGCCCTTCATCACCAACTATGTG
TTCGTCTGTAAAAATTGCTCTGCCAGCGGATTGGAGAGCTTTCGCAAGAG
CCAGGCTACCATATCCCAGATGTGCCACTGTGCCATTGCCAACATGCAGC
AGGCGGCTTCCAGGGACGGACGTCGCCAGATTCAGTTTAGCAAGGACAAG
GAGATCATACCGTACATCGAACAGTACTGGGAGGCCATGACCACCATGCC
ACGCAGACTCACCCAGTCCTGGTACAGCACCGTCCAGCGATCTTTGGTCA
AGGATGTGCAGACCCTGTTCACCTACGAGGAGCATGCGGAACATGGCGCC
ATGTACGGACTATTCCATCAGGATCTGCGAATCATCAAGCCCAACTACGA
GAGCATGAGCAAGAGCGGCGCCCTGCGACTCACCGACGATGGATATACTC
AAGCTTCCCTCTCCAAAAACAATCGACAGAAAAGGAAATTTCCCGGCACG
GATTCGGGTCCCACGGGCAAGAAGGGTCGGCCCAGTTCCGATATTACGGC
CAATGTAAAGTTGCCACCGCATGGCTATCCATTGGAACACCCCTTCAACA
AGGATGGCTATCGTTATATACTCGCCGAACCGGATCCACATGCTCCATTT
CGTCAGGAGTTCGACGAGAGCTCCGATTGGGCTGGCAAACCTATCCCCGG
CTGGCTCTACCGCATCCTGGTGCCACATTCTGTGCTCCTGGCGCTGCATG
ATCGGGCACCACAGCTGAAAATAAGCGAGGATCGGTTGGCGGTGACGGGC
GAACGTGGTTACTGCATGGTCCGAGCCACACACTCTGTGAACCGGGGATG
CTGGTACTTTGAGGTCACCATCGAAGAGATGCCCGACGGAGCTGCCACGC
GACTTGGCTGGGGCCGGGAGTACGGCAACTTGCAGGCTCCATTGGGATAC
GACAAGTTCGGTTACTCCTGGAGATCTCGCAAGGGCACCAAGTTTACCGA
GAGCCATGGCAAACACTACAGTGATGCCTATGTGGAGGGCGATACATTGG
GATTCCTCATAGAGCTGCCAGAGGAGGCGTCGCTCGACTATCTGCCCAAC
ACATTCAAAGATCGGCCCCTGGTCAAGTTCAAGTCTCATCTGTACTACGA
GGATAAGGACAAGATCACAGAAACCCTGAAAAATCTGCACATCCTGCAGG
GCAGCCGCATCGAGTTCTTTAAGAACGGTCAATCGCAGGGTGTGGCATTC
GAAGACATTTATGCCGGCAGCTATTTCCCGGCCATCTCGATCCACAAAAG
TGCAACGGTCAGCGTAAACTTCGGACCCGCCTTCAAGTATCCCGAGGTGC
TCGTCGAGCACAAAGCCAAGGGGATGCACGATCGCGTGGAGGAGCTGATC
ACAGAGCAATGTTTAGCCGACACCCTCTACCTCACAGAACACGATGGACG
TCTGCGCTTGGATAATATGGGTCTTTAGTGGGATATGTCGTCATACACAT
GAGTTTTGGAGAACTAGTGTGTTATTTTTGTATGCACTATACTTTGGAAA
GCAGAAATTTGAAAAGACTATCATCATACTATCATACCTAAAACATTTAA
AATTTACCACTTTTAAAGCAGAAGAATTTTAAGAAAACACTCTTTTGAGA
TCAAAAAAAAAAAAAAAAAAAA

LD31680.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:30:55
Subject Length Description Subject Range Query Range Score Percent Strand
ash2-RC 2020 ash2-RC 118..2020 1..1903 9515 100 Plus
ash2-RD 1971 ash2-RD 132..1971 64..1903 9200 100 Plus
ash2-RB 1459 ash2-RB 261..1459 704..1902 5995 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20475107..20475489 702..1084 1915 100 Plus
chr3R 27901430 chr3R 20473898..20474242 359..703 1725 100 Plus
chr3R 27901430 chr3R 20475558..20475838 1085..1365 1405 100 Plus
chr3R 27901430 chr3R 20476345..20476624 1623..1902 1400 100 Plus
chr3R 27901430 chr3R 20476029..20476287 1365..1623 1295 100 Plus
chr3R 27901430 chr3R 20473652..20473837 173..358 930 100 Plus
chr3R 27901430 chr3R 20473420..20473592 1..173 865 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:25:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24651859..24652241 702..1084 1915 100 Plus
3R 32079331 3R 24650650..24650994 359..703 1725 100 Plus
3R 32079331 3R 24653097..24653377 1623..1903 1405 100 Plus
3R 32079331 3R 24652310..24652590 1085..1365 1405 100 Plus
3R 32079331 3R 24652781..24653039 1365..1623 1295 100 Plus
3R 32079331 3R 24650404..24650589 173..358 930 100 Plus
3R 32079331 3R 24650172..24650344 1..173 865 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24392690..24393072 702..1084 1915 100 Plus
3R 31820162 3R 24391481..24391825 359..703 1725 100 Plus
3R 31820162 3R 24393928..24394208 1623..1903 1405 100 Plus
3R 31820162 3R 24393141..24393421 1085..1365 1405 100 Plus
3R 31820162 3R 24393612..24393870 1365..1623 1295 100 Plus
3R 31820162 3R 24391235..24391420 173..358 930 100 Plus
3R 31820162 3R 24391003..24391175 1..173 865 100 Plus
Blast to na_te.dros performed on 2019-03-16 16:37:25 has no hits.

LD31680.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:38:06 Download gff for LD31680.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20475558..20475838 1085..1365 100 -> Plus
chr3R 20473420..20473592 1..173 100 -> Plus
chr3R 20473653..20473837 174..358 100 -> Plus
chr3R 20473898..20474242 359..703 100 -> Plus
chr3R 20475109..20475489 704..1084 100 -> Plus
chr3R 20476030..20476287 1366..1623 100 -> Plus
chr3R 20476346..20476624 1624..1902 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:13:06 Download gff for LD31680.complete
Subject Subject Range Query Range Percent Splice Strand
ash2-RC 1..1671 58..1728 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:19:21 Download gff for LD31680.complete
Subject Subject Range Query Range Percent Splice Strand
ash2-RC 1..1671 58..1728 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:20:34 Download gff for LD31680.complete
Subject Subject Range Query Range Percent Splice Strand
ash2-RC 1..1671 58..1728 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:50:56 Download gff for LD31680.complete
Subject Subject Range Query Range Percent Splice Strand
ash2-RC 1..1671 58..1728 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:36:21 Download gff for LD31680.complete
Subject Subject Range Query Range Percent Splice Strand
ash2-RC 1..1671 58..1728 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:15:03 Download gff for LD31680.complete
Subject Subject Range Query Range Percent Splice Strand
ash2-RC 85..1986 1..1902 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:19:20 Download gff for LD31680.complete
Subject Subject Range Query Range Percent Splice Strand
ash2-RC 85..1986 1..1902 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:34 Download gff for LD31680.complete
Subject Subject Range Query Range Percent Splice Strand
ash2-RC 48..1949 1..1902 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:50:56 Download gff for LD31680.complete
Subject Subject Range Query Range Percent Splice Strand
ash2-RC 85..1986 1..1902 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:36:21 Download gff for LD31680.complete
Subject Subject Range Query Range Percent Splice Strand
ash2-RC 48..1949 1..1902 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:38:06 Download gff for LD31680.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24650172..24650344 1..173 100 -> Plus
3R 24650405..24650589 174..358 100 -> Plus
3R 24650650..24650994 359..703 100 -> Plus
3R 24651861..24652241 704..1084 100 -> Plus
3R 24652310..24652590 1085..1365 100 -> Plus
3R 24652782..24653039 1366..1623 100 -> Plus
3R 24653098..24653376 1624..1902 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:38:06 Download gff for LD31680.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24650172..24650344 1..173 100 -> Plus
3R 24650405..24650589 174..358 100 -> Plus
3R 24650650..24650994 359..703 100 -> Plus
3R 24651861..24652241 704..1084 100 -> Plus
3R 24652310..24652590 1085..1365 100 -> Plus
3R 24652782..24653039 1366..1623 100 -> Plus
3R 24653098..24653376 1624..1902 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:38:06 Download gff for LD31680.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24650172..24650344 1..173 100 -> Plus
3R 24650405..24650589 174..358 100 -> Plus
3R 24650650..24650994 359..703 100 -> Plus
3R 24651861..24652241 704..1084 100 -> Plus
3R 24652310..24652590 1085..1365 100 -> Plus
3R 24652782..24653039 1366..1623 100 -> Plus
3R 24653098..24653376 1624..1902 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:34 Download gff for LD31680.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20478820..20479098 1624..1902 100   Plus
arm_3R 20475894..20476066 1..173 100 -> Plus
arm_3R 20476127..20476311 174..358 100 -> Plus
arm_3R 20476372..20476716 359..703 100 -> Plus
arm_3R 20477583..20477963 704..1084 100 -> Plus
arm_3R 20478032..20478312 1085..1365 100 -> Plus
arm_3R 20478504..20478761 1366..1623 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:29:19 Download gff for LD31680.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24391003..24391175 1..173 100 -> Plus
3R 24391236..24391420 174..358 100 -> Plus
3R 24391481..24391825 359..703 100 -> Plus
3R 24392692..24393072 704..1084 100 -> Plus
3R 24393141..24393421 1085..1365 100 -> Plus
3R 24393613..24393870 1366..1623 100 -> Plus
3R 24393929..24394207 1624..1902 100   Plus

LD31680.pep Sequence

Translation from 57 to 1727

> LD31680.pep
MEDSQMDTSSPTESSSEVNFTAEEDKSQETRSAAGVCYCGKERNLNIVEL
LCATCSRWVHETCVSYQLGKGKLLPFITNYVFVCKNCSASGLESFRKSQA
TISQMCHCAIANMQQAASRDGRRQIQFSKDKEIIPYIEQYWEAMTTMPRR
LTQSWYSTVQRSLVKDVQTLFTYEEHAEHGAMYGLFHQDLRIIKPNYESM
SKSGALRLTDDGYTQASLSKNNRQKRKFPGTDSGPTGKKGRPSSDITANV
KLPPHGYPLEHPFNKDGYRYILAEPDPHAPFRQEFDESSDWAGKPIPGWL
YRILVPHSVLLALHDRAPQLKISEDRLAVTGERGYCMVRATHSVNRGCWY
FEVTIEEMPDGAATRLGWGREYGNLQAPLGYDKFGYSWRSRKGTKFTESH
GKHYSDAYVEGDTLGFLIELPEEASLDYLPNTFKDRPLVKFKSHLYYEDK
DKITETLKNLHILQGSRIEFFKNGQSQGVAFEDIYAGSYFPAISIHKSAT
VSVNFGPAFKYPEVLVEHKAKGMHDRVEELITEQCLADTLYLTEHDGRLR
LDNMGL*

LD31680.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17218-PA 555 GF17218-PA 1..555 1..556 2773 92.6 Plus
Dana\GF20784-PA 483 GF20784-PA 1..459 77..544 1587 62.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11306-PA 556 GG11306-PA 1..556 1..556 2990 98.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18438-PA 576 GH18438-PA 1..576 1..556 2663 83.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
ash2-PC 556 CG6677-PC 1..556 1..556 2978 100 Plus
ash2-PB 350 CG6677-PB 9..350 215..556 1841 99.4 Plus
ash2-PE 220 CG6677-PE 1..220 337..556 1179 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24014-PA 554 GI24014-PA 1..554 1..556 2701 86.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13614-PA 557 GL13614-PA 1..557 1..556 2794 92.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26848-PA 557 GA26848-PA 1..557 1..556 2789 92.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26615-PA 556 GM26615-PA 1..556 1..556 3004 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21115-PA 350 GD21115-PA 9..350 215..556 1844 98.5 Plus
Dsim\GD21114-PA 165 GD21114-PA 68..126 3..57 232 76.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23645-PA 573 GJ23645-PA 1..573 1..556 2706 84.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10965-PA 569 GK10965-PA 1..559 1..547 2698 87.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23503-PA 626 GE23503-PA 73..626 3..556 2978 98 Plus

LD31680.hyp Sequence

Translation from 57 to 1727

> LD31680.hyp
MEDSQMDTSSPTESSSEVNFTAEEDKSQETRSAAGVCYCGKERNLNIVEL
LCATCSRWVHETCVSYQLGKGKLLPFITNYVFVCKNCSASGLESFRKSQA
TISQMCHCAIANMQQAASRDGRRQIQFSKDKEIIPYIEQYWEAMTTMPRR
LTQSWYSTVQRSLVKDVQTLFTYEEHAEHGAMYGLFHQDLRIIKPNYESM
SKSGALRLTDDGYTQASLSKNNRQKRKFPGTDSGPTGKKGRPSSDITANV
KLPPHGYPLEHPFNKDGYRYILAEPDPHAPFRQEFDESSDWAGKPIPGWL
YRILVPHSVLLALHDRAPQLKISEDRLAVTGERGYCMVRATHSVNRGCWY
FEVTIEEMPDGAATRLGWGREYGNLQAPLGYDKFGYSWRSRKGTKFTESH
GKHYSDAYVEGDTLGFLIELPEEASLDYLPNTFKDRPLVKFKSHLYYEDK
DKITETLKNLHILQGSRIEFFKNGQSQGVAFEDIYAGSYFPAISIHKSAT
VSVNFGPAFKYPEVLVEHKAKGMHDRVEELITEQCLADTLYLTEHDGRLR
LDNMGL*

LD31680.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
ash2-PC 556 CG6677-PC 1..556 1..556 2978 100 Plus
ash2-PB 350 CG6677-PB 9..350 215..556 1841 99.4 Plus
ash2-PE 220 CG6677-PE 1..220 337..556 1179 100 Plus