Clone LD31822 Report

Search the DGRC for LD31822

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:318
Well:22
Vector:pOT2
Associated Gene/TranscriptCG31918-RA
Protein status:LD31822.pep: gold
Preliminary Size:2184
Sequenced Size:2280

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18592 2001-01-01 Release 2 assignment
CG31918 2001-10-10 Blastp of sequenced clone
CG31918 2003-01-01 Sim4 clustering to Release 3
CG31918 2008-04-29 Release 5.5 accounting
CG31918 2008-08-15 Release 5.9 accounting
CG31918 2008-12-18 5.12 accounting

Clone Sequence Records

LD31822.complete Sequence

2280 bp (2280 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061394

> LD31822.complete
CGCAATTCGCCAAAACAACAGATTTAAAATTTCGTATAATTTCATCAGGT
TTCTTAGAAGTCATTGCTGATTACTTCCAAATGCCGCATCAGTTGATGAG
TTAAGATGATGGAATCCAGATCGTACCTCAGCCTAAGCTGGCTGCTTCTT
CTTCTGTGCAGTACAGTATGTTCTGCAAATCCCAATCTCGAGATCATGAA
GCGAATGCTAGACGACATGGATGAAAAAGTCGAACCATGTCACAATTTCT
ACAACTCCTCCCAAAAGAATCTCAAGTGGCATGCATTTGCGACGGTGAGC
GATCAGTTCCAACTCCTCTTCGACGGAATTGAGAACGAGGTGTTCGAGAA
GCACAGCTTCGAGGAAAAGTTGCAGCGTCTATACAAAATCTGTTCGACCA
TGGAGAGACCCAGTCTTCTGAGGTATTTTGAGCTGGTGAAGCCGGGAGAA
GATCTCAACTGGCCCTTTCTGACGCCCCGAGGAGGCAAGTGGCCCAAGGA
GAAGTTTCAGTGGATGGAGGCACTGGCTCGACTGCGTCGGTACGGCTTCA
ATGACATCATGTTTGGAATGAGTATAAGACAGGATCCGAACAGTGACAGT
GGCCAACCCATAGTAGTTTTTGAAAAAAAGTACGATTCTCTATTCCGTTT
CATAGAGTCGCTGCAAAATATTGGTCTGCCACCAAAATTGGCAAAGGAGA
TAGCGCCTCTGGATAATGCCATACAAGAAATGTACAAATCAGATATGAAA
TTTGAACACTATGCACGAGATGCAGCACCAGTGAAACGGATTAGTCTAGG
GCAGTTGGAAATTTATGGGGTGTCCCTAACCAAGTATCTGGAGATCGTCT
TCGGACGCCCCTTTTCGCCGGATTTTGTAGTGCATGTGGAGAATCTGTAC
TACTTACGGGGGCTCCAGAATTTGATGACTGCCGTTCCGAGCCAGGTGGT
GGCCAATTATCTAACGGCACGCTTCAGCTTCTATATAATGTTCACGTTCA
TGAAGCATGGAGATTCATGCGTGACTACAATGCGCCAATCCATGGAATTC
GCCAGCAATCTGCTGTTCGAGGAGCGAATTCTGGGACGCAAGAAGCTGCG
TAGCTATCAAAACCAGGCCGGCAAGATATTTGATGCCATACGCCAGCAGC
TAAACATCCGGCTCGAAAGGAACGTTCTTAAGCTGCCGCCCGCTGAGATT
TCCTTACTGCAGAAGAAGTTGAATGGCCTGAGCCTGAGCATCGGCAATCT
GCCGGGAAAGGCGGGCCATCGACGTTTCGTAACCCGATACTACAAGGAGC
TTGAATTTGCGGACGACGAGGAACTTGCGACTGCTCACCTAAAGGTTCTG
GAGCACCGAACGCGTGCCGAACTAAGCTTACTGGACCAACCGAACTTCAA
AGACCGGCGATACATGCTCCATTCATATCCCATTTCGAATTTCTTCTTCG
AAACTGCGTATGAGGAAAATGGAAATACGATTTATGTGGCATACGACTTT
CTGGCAGATGCTTCATTTGATCCCGACAGCCACGATATCTTCAAAGTGAC
ACCCTTGGGCATTCGCTTTGGCCTTGAGATGTTAAAAAGTTTCGATCTTT
TTAATTGCAAACATCATAAGGTCAATATGCTCCAATTGTTCGACGATAAC
CAAATTACTACCGCCGGCGATGAGTGTGTAAGCGCATGGACCCAAGATAA
TTTGCTTAGCCAACGCGACCAGTACCTCGTCGTGCTCCATTTGGTCCACG
AAGCCTACTTCGCAGAAGGTTCCAAGTTCAGCCAGAGGCAGCCCAACTTC
ACCACCATGTCTCTGAGGGAATTGTTCTTCTTCAGATTTGGCCAGAGTTC
CTTCGGCCAAACCCTGTATTTCGGCAGCGATTTCGTCGAGGGCGGTTCAC
CCATAAATTCCCTGACAAGGCTGCCTGTTTTTGTCCGGACCTTCAACTGC
TTGGCTCCAGGGGAGCAGCTCACCACCACACAGAAATCTACATAGTTTAA
AGATACTTTTCATTCCAGTACATGCTAGATATACATATGTACTAGAATAA
CGAAAAATGAATGCATTTACTACATGGTCTACCTCATTTTACAAAATGAT
ACAATAGAATATATGTATTTTTGTACGAAACCATTCAAATTAATGTTCAA
TTGTTGCCGAGACAGCAAGACAACAATTACAATTTAAGAGACACAACTAA
TAATGTACAGTCTGAACAAAATATATGAATGAACGCTTTCCTTTGTGGTT
AAACATTTACAAAAAAAAAAAAAAAAAAAA

LD31822.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG31918-RA 2268 CG31918-RA 1..2268 1..2268 11325 99.9 Plus
His3_3A-RA 1049 His3_3A-RA 838..1049 2269..2058 1045 99.5 Minus
His3_3A.a 905 His3_3A.a 727..905 2269..2091 880 99.4 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5055082..5057341 2260..1 11300 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:25:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5055973..5058241 2269..1 11330 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:35:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5055973..5058241 2269..1 11330 99.9 Minus
Blast to na_te.dros performed 2019-03-16 10:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 501..665 2036..2196 131 59.4 Plus

LD31822.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:51:54 Download gff for LD31822.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5055082..5057341 1..2260 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:13:11 Download gff for LD31822.complete
Subject Subject Range Query Range Percent Splice Strand
CG31918-RA 1..1890 106..1995 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:51:16 Download gff for LD31822.complete
Subject Subject Range Query Range Percent Splice Strand
CG31918-RA 1..1890 106..1995 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:27:23 Download gff for LD31822.complete
Subject Subject Range Query Range Percent Splice Strand
CG31918-RA 1..1890 106..1995 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:20:22 Download gff for LD31822.complete
Subject Subject Range Query Range Percent Splice Strand
CG31918-RA 1..1890 106..1995 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:17:44 Download gff for LD31822.complete
Subject Subject Range Query Range Percent Splice Strand
CG31918-RA 1..1890 106..1995 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:36:06 Download gff for LD31822.complete
Subject Subject Range Query Range Percent Splice Strand
CG31918-RA 1..2260 1..2260 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:51:16 Download gff for LD31822.complete
Subject Subject Range Query Range Percent Splice Strand
CG31918-RA 1..2260 1..2260 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:27:23 Download gff for LD31822.complete
Subject Subject Range Query Range Percent Splice Strand
CG31918-RA 8..2267 1..2260 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:20:22 Download gff for LD31822.complete
Subject Subject Range Query Range Percent Splice Strand
CG31918-RA 1..2260 1..2260 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:17:44 Download gff for LD31822.complete
Subject Subject Range Query Range Percent Splice Strand
CG31918-RA 8..2267 1..2260 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:51:54 Download gff for LD31822.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5055982..5058241 1..2260 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:51:54 Download gff for LD31822.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5055982..5058241 1..2260 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:51:54 Download gff for LD31822.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5055982..5058241 1..2260 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:27:23 Download gff for LD31822.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5055982..5058241 1..2260 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:57:04 Download gff for LD31822.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5055982..5058241 1..2260 100   Minus

LD31822.pep Sequence

Translation from 105 to 1994

> LD31822.pep
MMESRSYLSLSWLLLLLCSTVCSANPNLEIMKRMLDDMDEKVEPCHNFYN
SSQKNLKWHAFATVSDQFQLLFDGIENEVFEKHSFEEKLQRLYKICSTME
RPSLLRYFELVKPGEDLNWPFLTPRGGKWPKEKFQWMEALARLRRYGFND
IMFGMSIRQDPNSDSGQPIVVFEKKYDSLFRFIESLQNIGLPPKLAKEIA
PLDNAIQEMYKSDMKFEHYARDAAPVKRISLGQLEIYGVSLTKYLEIVFG
RPFSPDFVVHVENLYYLRGLQNLMTAVPSQVVANYLTARFSFYIMFTFMK
HGDSCVTTMRQSMEFASNLLFEERILGRKKLRSYQNQAGKIFDAIRQQLN
IRLERNVLKLPPAEISLLQKKLNGLSLSIGNLPGKAGHRRFVTRYYKELE
FADDEELATAHLKVLEHRTRAELSLLDQPNFKDRRYMLHSYPISNFFFET
AYEENGNTIYVAYDFLADASFDPDSHDIFKVTPLGIRFGLEMLKSFDLFN
CKHHKVNMLQLFDDNQITTAGDECVSAWTQDNLLSQRDQYLVVLHLVHEA
YFAEGSKFSQRQPNFTTMSLRELFFFRFGQSSFGQTLYFGSDFVEGGSPI
NSLTRLPVFVRTFNCLAPGEQLTTTQKST*

LD31822.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15285-PA 584 GF15285-PA 1..579 38..614 798 35.5 Plus
Dana\GF15284-PA 564 GF15284-PA 22..560 67..615 750 35.3 Plus
Dana\GF16985-PA 671 GF16985-PA 1..662 1..622 721 29.8 Plus
Dana\GF15392-PA 656 GF15392-PA 21..645 23..615 543 27.6 Plus
Dana\GF14393-PA 474 GF14393-PA 19..403 21..383 317 25.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24319-PA 619 GG24319-PA 19..618 20..622 2575 79.6 Plus
Dere\GG11194-PA 644 GG11194-PA 29..628 21..615 671 30.7 Plus
Dere\GG10409-PA 692 GG10409-PA 133..639 87..586 223 22 Plus
Dere\GG10407-PA 652 GG10407-PA 38..648 22..627 190 20.5 Plus
Dere\GG25355-PA 74 GG25355-PA 1..74 64..135 151 41.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13261-PA 678 GH13261-PA 54..674 25..627 603 27.8 Plus
Dgri\GH25251-PA 658 GH25251-PA 29..654 25..627 587 27.4 Plus
Dgri\GH13639-PA 635 GH13639-PA 1..631 15..627 520 26.8 Plus
Dgri\GH10747-PA 713 GH10747-PA 143..698 76..615 259 21.6 Plus
Dgri\GH21315-PA 613 GH21315-PA 2..597 6..615 239 22.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:21
Subject Length Description Subject Range Query Range Score Percent Strand
Nepl3-PA 629 CG31918-PA 1..629 1..629 3294 100 Plus
Nepl6-PA 655 CG9508-PA 23..615 24..601 567 28.5 Plus
Nepl8-PA 619 CG4580-PA 2..578 12..586 457 23.7 Plus
Nepl5-PA 684 CG9507-PA 7..631 10..586 250 21.2 Plus
Nepl4-PA 652 CG9505-PA 38..637 22..615 202 19.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17503-PA 863 GI17503-PA 230..810 27..580 575 27.8 Plus
Dmoj\GI11574-PA 689 GI11574-PA 2..674 8..615 240 21.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:24:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26263-PA 958 GL26263-PA 319..941 25..615 690 29.7 Plus
Dper\GL25525-PA 676 GL25525-PA 112..619 76..580 304 23.5 Plus
Dper\GL10114-PA 919 GL10114-PA 36..492 37..497 218 23.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:24:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28099-PA 956 GA28099-PA 291..939 9..615 677 28.9 Plus
Dpse\GA21842-PA 676 GA21842-PA 112..619 76..580 304 23.5 Plus
Dpse\GA21158-PA 634 GA21158-PA 36..492 37..497 214 23.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18038-PA 462 GM18038-PA 171..462 338..629 1433 91.8 Plus
Dsec\GM26493-PA 661 GM26493-PA 1..618 1..590 694 30.3 Plus
Dsec\GM17944-PA 948 GM17944-PA 293..898 9..580 562 27 Plus
Dsec\GM18038-PA 462 GM18038-PA 1..105 1..105 445 92.4 Plus
Dsec\GM17180-PA 335 GM17180-PA 2..330 12..316 307 26.9 Plus
Dsec\GM18625-PA 684 GM18625-PA 7..631 10..586 216 20.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:24:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22664-PA 392 GD22664-PA 1..368 1..370 1711 90.5 Plus
Dsim\GD21007-PA 658 GD21007-PA 27..626 19..606 663 31.1 Plus
Dsim\GD22581-PA 948 GD22581-PA 293..898 9..580 572 27.9 Plus
Dsim\GD24059-PA 638 GD24059-PA 2..511 12..496 501 27.1 Plus
Dsim\GD23407-PA 684 GD23407-PA 7..631 10..586 223 21.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:24:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12871-PA 699 GJ12871-PA 2..684 8..615 263 21.8 Plus
Dvir\GJ22936-PA 666 GJ22936-PA 25..527 25..500 215 22.9 Plus
Dvir\GJ15205-PA 650 GJ15205-PA 38..647 21..628 187 21.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15358-PA 952 GK15358-PA 320..908 25..589 539 27.5 Plus
Dwil\GK14758-PA 685 GK14758-PA 2..670 8..615 299 22.5 Plus
Dwil\GK15360-PA 646 GK15360-PA 33..644 22..629 181 20.5 Plus
Dwil\GK18887-PA 635 GK18887-PA 31..608 28..615 169 22.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18699-PA 620 GE18699-PA 18..619 19..622 2494 76.7 Plus
Dyak\GE18847-PA 622 GE18847-PA 1..619 2..618 745 31.7 Plus
Dyak\GE10361-PA 662 GE10361-PA 1..646 1..615 686 30 Plus
Dyak\GE18448-PA 676 GE18448-PA 21..669 9..621 587 27 Plus
Dyak\GE13111-PA 637 GE13111-PA 2..511 12..497 463 25.8 Plus

LD31822.hyp Sequence

Translation from 105 to 1994

> LD31822.hyp
MMESRSYLSLSWLLLLLCSTVCSANPNLEIMKRMLDDMDEKVEPCHNFYN
SSQKNLKWHAFATVSDQFQLLFDGIENEVFEKHSFEEKLQRLYKICSTME
RPSLLRYFELVKPGEDLNWPFLTPRGGKWPKEKFQWMEALARLRRYGFND
IMFGMSIRQDPNSDSGQPIVVFEKKYDSLFRFIESLQNIGLPPKLAKEIA
PLDNAIQEMYKSDMKFEHYARDAAPVKRISLGQLEIYGVSLTKYLEIVFG
RPFSPDFVVHVENLYYLRGLQNLMTAVPSQVVANYLTARFSFYIMFTFMK
HGDSCVTTMRQSMEFASNLLFEERILGRKKLRSYQNQAGKIFDAIRQQLN
IRLERNVLKLPPAEISLLQKKLNGLSLSIGNLPGKAGHRRFVTRYYKELE
FADDEELATAHLKVLEHRTRAELSLLDQPNFKDRRYMLHSYPISNFFFET
AYEENGNTIYVAYDFLADASFDPDSHDIFKVTPLGIRFGLEMLKSFDLFN
CKHHKVNMLQLFDDNQITTAGDECVSAWTQDNLLSQRDQYLVVLHLVHEA
YFAEGSKFSQRQPNFTTMSLRELFFFRFGQSSFGQTLYFGSDFVEGGSPI
NSLTRLPVFVRTFNCLAPGEQLTTTQKST*

LD31822.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG31918-PA 629 CG31918-PA 1..629 1..629 3294 100 Plus
CG42370-PA 655 CG9508-PA 23..615 24..601 567 28.5 Plus
CG4580-PA 619 CG4580-PA 2..578 12..586 457 23.7 Plus
CG9507-PA 684 CG9507-PA 7..631 10..586 250 21.2 Plus
CG9505-PA 652 CG9505-PA 38..637 22..615 202 19.8 Plus