Clone LD31969 Report

Search the DGRC for LD31969

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:319
Well:69
Vector:pOT2
Associated Gene/TranscriptCG15118-RA
Protein status:LD31969.pep: gold
Preliminary Size:2918
Sequenced Size:2509

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15118 2001-07-04 Blastp of sequenced clone
CG15118 2003-01-01 Sim4 clustering to Release 3
CG15118 2008-04-29 Release 5.5 accounting
CG15118 2008-08-15 Release 5.9 accounting
CG15118 2008-12-18 5.12 accounting

Clone Sequence Records

LD31969.complete Sequence

2509 bp (2509 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051804

> LD31969.complete
CTCATAAAGTTTGTTTTTTTCACCTAGCAGAGAAACAAAAGAATTGACAA
TTTAGCCGCAGATCAGACGACGCAAATCCCAATCCAGGATGAGGAGCGTC
GAGGAGATCAAAGCGGAGTACCCGCTGCACTGGCACATCTGGCACAACGA
ACTGGAGCAGCTGCAGGCGGCCATCGACCAGAACGATAAGGAGAAAATCG
ATCCCCGCGGCCGGACGCCACTGATGCTGGCTGTGAGATTGGCCAATTTG
CCATGCGTTAAATGCCTTCTGGCGGCCAAATGCAATGCGACCTATGAGTA
CGAAGGCTGGTCGATTGTCCAGGAAGCGGTCTGCACCGGCGATGTGGACA
TACTGACGGCCATCATCGAAGTCCGGGATCTCCAGCGTCATGTCCAGCGG
GTTACGCATGTGCCTAAGCTGCTGCAGCACCTATTGGACGCACCAGATTT
CTACATCGAGATGAAGTGGGAATTCACCTCCTGGGTGCCTCTGATGTCGC
GTCTCTGTCCCAGCGACACCTACAAGGTCTACAAGCGGGGAGCCAACGTC
CGGATAGATACCACCCTGCTGGGCTTCGACAACAACACCTGGCAACGGGG
CAATCGCTCTTACATCTTCAAGGGGGCCAAAGAAACTGCCACGATGATCG
AGATCGATCACGATACAAACGAAGTAATGGTGGAGGAGATGAGCAGCGAT
ATCGGTGATATTGTGGCCATTCCACCAGCCTTGGGCACCGTGAGGGCGCG
CCTCAATGCCCCGGTGATCACGAACAACATCGAGATGGACAAGATTAGCT
TCGAGCGCAACAAGTGCGGCATATGGGGATGGCGTAGCGAGAAATCTGAG
ATGATCAACGGCTACAACTGCAAGGTGTATGGGGCCAGCAACGTGGAGTT
TGTTACAAAGACGCGAATGGATCACCTTAGCGAGGAGCAAATTAAGAACA
AGACAGCGAGGACTCCACTGCATAGCCTGCTGGGAATTGCTGATGAGGAT
TATGTGTCACCCGCTGATGCTGCTGCGGCACTAAAAGATCGTACACCATC
GCCCCGGTTGGAGGAAGCTTCCAACGCTGGAGTTGAAAATGGTGGCCGAA
ACTCACCAGCCCCTGGAAATCAAAGCAACGGAAGCTCCGCGGGTGCGTCG
GGCACCAGTACTCCAAAGTCTTCTGTTACTCCGGAGGAGTATTTTACTCA
GGAGTTTGATCTTCACGGAAGGGATGTTGGCGGTCCCAAGAACCTGAGCA
CAAAGGTGCAGCGCTTTAGAGCCAACTTATGGTTAGCCGAGGAGCATCCC
ATTCGACTGCAGGAACAGGTGCTTCCCATTTTGGATCTCATGTCCACCAT
GGCCAGTCCACATGTGTCCAAGCTGAGAGACTTTATCACCATGCAGCTGC
CTGCTGGTTTTCCAGTCAAAGTGGAAATCCCGCTCTTCCATGTTTTAAAT
GCCTGTATTACATTTGGAAACGTATTTGCTTTAACCACGCCCGTTGATCA
CGTGGCCACGCTGCAGGAGCAAGATCGTGTCACTTGTTTGGTCGATGATC
GCTGCTTCGATATCCCAGCTCACTACACAAACAGGGGCAGCGATGTCCGT
CGGCAAATTCCTCTTGACGAGGATGACATGCTACAGTATGCAATTGAGCA
GAGTTTGGTGGAAACAAGCGGAGCCTGTGGCGTGGACGCTCGGGACGACG
ACAAGGTGGATATCTGGGAAGTGTTGAGAGGCCAAAACGTCGTGGGCTCC
GATCTCCTGCCAGAAGATGACGAGCAGCTGCAACGAGTCCTGCAGGAATC
GCTGCTTGGCGCCCATGCAAATCTCCAAAGCGGTTCGCCCGCCTCCGACG
AAGACGACGATGGTGGCTTCCGGTATGTGGATCCCGATTTGGCCATGGCC
ATGCGACTGTCACAGCAAGAGCAGAGAAAGTTCGAACTGGAGCGGCAGCA
GGAGCAGGAGATGATCGAGCAGGCGTTAAAGCTTAGCCTGCAAGAGCACT
AATATACTATCAGCAATTCCAAATTGAAGTTATATTGATTTCAAGTGTAA
CCTTCGGGCTAAGTTGTATAAATACTACGAGTACTTTAAGTTACCCTCGC
ATCCTTCTGCGCCCTGTCCTTGTTTTGTATTGTGATACAAGCGGGACGCA
AGCGGGAAGCAGTCGCCTGGTCTCAACTCGTCCACTCGCAACCGAAGGAT
CCACCCTATATATACCATGTATCCAAAGTAGTCCTTGTAGTTGTAGCTTT
TGCATTGAATCCGGTATCTATTATCTAGATACTATCTTAAATTTAAGTGC
GTGTGGCGACCGTGAGATATGTCTTATATGCGATCGAACCGGGTTAGCCA
CATGCTTGCGTGTCCTTAATCTGTAACCACTAATCACCATTATGCGTAAT
TTATACCAATAATACCCACTCACACATCATGCGCATGTAAGCCGACACCT
TTTTGTGTAAATGAAGAAAATATATGAAATAATCATCAGGAAAAAAAAAA
AAAAAAAAA

LD31969.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG15118-RB 2652 CG15118-RB 60..2553 1..2494 12455 99.9 Plus
CG15118.c 2533 CG15118.c 37..2527 1..2494 12385 99.8 Plus
CG15118-RE 2889 CG15118-RE 105..1889 1..1785 8910 99.9 Plus
CG15118-RE 2889 CG15118-RE 2184..2889 1785..2490 3530 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:04:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 15022013..15022755 1785..1043 3700 99.9 Minus
chr2R 21145070 chr2R 15020857..15021562 2490..1785 3500 99.7 Minus
chr2R 21145070 chr2R 15023068..15023384 946..630 1585 100 Minus
chr2R 21145070 chr2R 15023452..15023766 629..315 1575 100 Minus
chr2R 21145070 chr2R 15024080..15024260 181..1 905 100 Minus
chr2R 21145070 chr2R 15023824..15023959 314..179 665 99.3 Minus
chr2R 21145070 chr2R 15022815..15022916 1042..941 495 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:25:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19134883..19135625 1785..1043 3700 99.9 Minus
2R 25286936 2R 19133723..19134432 2494..1785 3550 100 Minus
2R 25286936 2R 19135939..19136255 946..630 1585 100 Minus
2R 25286936 2R 19136323..19136637 629..315 1575 100 Minus
2R 25286936 2R 19136951..19137131 181..1 905 100 Minus
2R 25286936 2R 19136695..19136830 314..179 680 100 Minus
2R 25286936 2R 19135685..19135786 1042..941 495 99 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:53:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 19136082..19136824 1785..1043 3700 99.8 Minus
2R 25260384 2R 19134922..19135631 2494..1785 3550 100 Minus
2R 25260384 2R 19137138..19137454 946..630 1585 100 Minus
2R 25260384 2R 19137522..19137836 629..315 1575 100 Minus
2R 25260384 2R 19138150..19138330 181..1 905 100 Minus
2R 25260384 2R 19137894..19138029 314..179 680 100 Minus
2R 25260384 2R 19136884..19136985 1042..941 495 99 Minus
Blast to na_te.dros performed on 2019-03-16 11:04:04 has no hits.

LD31969.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:04:57 Download gff for LD31969.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 15020857..15021561 1786..2490 99 <- Minus
chr2R 15022013..15022755 1043..1785 99 <- Minus
chr2R 15022815..15022910 947..1042 100 <- Minus
chr2R 15023068..15023384 630..946 100 <- Minus
chr2R 15023452..15023766 315..629 100 <- Minus
chr2R 15023824..15023956 182..314 99 <- Minus
chr2R 15024080..15024260 1..181 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:13:16 Download gff for LD31969.complete
Subject Subject Range Query Range Percent Splice Strand
CG15118-RB 1..1914 89..2002 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:19:24 Download gff for LD31969.complete
Subject Subject Range Query Range Percent Splice Strand
CG15118-RB 1..1914 89..2002 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:28:58 Download gff for LD31969.complete
Subject Subject Range Query Range Percent Splice Strand
CG15118-RA 1..1914 89..2002 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:50:59 Download gff for LD31969.complete
Subject Subject Range Query Range Percent Splice Strand
CG15118-RB 1..1914 89..2002 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:25:01 Download gff for LD31969.complete
Subject Subject Range Query Range Percent Splice Strand
CG15118-RA 1..1914 89..2002 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:15:10 Download gff for LD31969.complete
Subject Subject Range Query Range Percent Splice Strand
CG15118-RB 37..2526 1..2490 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:19:24 Download gff for LD31969.complete
Subject Subject Range Query Range Percent Splice Strand
CG15118-RB 37..2526 1..2490 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:28:58 Download gff for LD31969.complete
Subject Subject Range Query Range Percent Splice Strand
CG15118-RB 39..2528 1..2490 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:50:59 Download gff for LD31969.complete
Subject Subject Range Query Range Percent Splice Strand
CG15118-RB 37..2526 1..2490 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:25:01 Download gff for LD31969.complete
Subject Subject Range Query Range Percent Splice Strand
CG15118-RB 39..2528 1..2490 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:04:57 Download gff for LD31969.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19133727..19134431 1786..2490 100 <- Minus
2R 19134883..19135625 1043..1785 99 <- Minus
2R 19135685..19135780 947..1042 100 <- Minus
2R 19135939..19136255 630..946 100 <- Minus
2R 19136323..19136637 315..629 100 <- Minus
2R 19136695..19136827 182..314 100 <- Minus
2R 19136951..19137131 1..181 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:04:57 Download gff for LD31969.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19133727..19134431 1786..2490 100 <- Minus
2R 19134883..19135625 1043..1785 99 <- Minus
2R 19135685..19135780 947..1042 100 <- Minus
2R 19135939..19136255 630..946 100 <- Minus
2R 19136323..19136637 315..629 100 <- Minus
2R 19136695..19136827 182..314 100 <- Minus
2R 19136951..19137131 1..181 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:04:57 Download gff for LD31969.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19133727..19134431 1786..2490 100 <- Minus
2R 19134883..19135625 1043..1785 99 <- Minus
2R 19135685..19135780 947..1042 100 <- Minus
2R 19135939..19136255 630..946 100 <- Minus
2R 19136323..19136637 315..629 100 <- Minus
2R 19136695..19136827 182..314 100 <- Minus
2R 19136951..19137131 1..181 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:28:58 Download gff for LD31969.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15021232..15021936 1786..2490 100 <- Minus
arm_2R 15022388..15023130 1043..1785 99 <- Minus
arm_2R 15023190..15023285 947..1042 100 <- Minus
arm_2R 15023444..15023760 630..946 100 <- Minus
arm_2R 15023828..15024142 315..629 100 <- Minus
arm_2R 15024200..15024332 182..314 100 <- Minus
arm_2R 15024456..15024636 1..181 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:29:23 Download gff for LD31969.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19134926..19135630 1786..2490 100 <- Minus
2R 19136082..19136824 1043..1785 99 <- Minus
2R 19136884..19136979 947..1042 100 <- Minus
2R 19137138..19137454 630..946 100 <- Minus
2R 19137522..19137836 315..629 100 <- Minus
2R 19137894..19138026 182..314 100 <- Minus
2R 19138150..19138330 1..181 100   Minus

LD31969.pep Sequence

Translation from 88 to 2001

> LD31969.pep
MRSVEEIKAEYPLHWHIWHNELEQLQAAIDQNDKEKIDPRGRTPLMLAVR
LANLPCVKCLLAAKCNATYEYEGWSIVQEAVCTGDVDILTAIIEVRDLQR
HVQRVTHVPKLLQHLLDAPDFYIEMKWEFTSWVPLMSRLCPSDTYKVYKR
GANVRIDTTLLGFDNNTWQRGNRSYIFKGAKETATMIEIDHDTNEVMVEE
MSSDIGDIVAIPPALGTVRARLNAPVITNNIEMDKISFERNKCGIWGWRS
EKSEMINGYNCKVYGASNVEFVTKTRMDHLSEEQIKNKTARTPLHSLLGI
ADEDYVSPADAAAALKDRTPSPRLEEASNAGVENGGRNSPAPGNQSNGSS
AGASGTSTPKSSVTPEEYFTQEFDLHGRDVGGPKNLSTKVQRFRANLWLA
EEHPIRLQEQVLPILDLMSTMASPHVSKLRDFITMQLPAGFPVKVEIPLF
HVLNACITFGNVFALTTPVDHVATLQEQDRVTCLVDDRCFDIPAHYTNRG
SDVRRQIPLDEDDMLQYAIEQSLVETSGACGVDARDDDKVDIWEVLRGQN
VVGSDLLPEDDEQLQRVLQESLLGAHANLQSGSPASDEDDDGGFRYVDPD
LAMAMRLSQQEQRKFELERQQEQEMIEQALKLSLQEH*

LD31969.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:10:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13381-PA 642 GF13381-PA 1..642 1..637 3069 89.4 Plus
Dana\GF12280-PA 542 GF12280-PA 77..538 4..505 514 27.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:10:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20921-PA 637 GG20921-PA 1..637 1..637 3372 98.3 Plus
Dere\GG20989-PA 541 GG20989-PA 82..537 10..505 507 27.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23148-PA 649 GH23148-PA 1..649 1..637 2754 81.1 Plus
Dgri\GH20848-PA 531 GH20848-PA 84..527 9..505 498 27.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG15118-PB 637 CG15118-PB 1..637 1..637 3337 100 Plus
CG15118-PA 637 CG15118-PA 1..637 1..637 3337 100 Plus
CG15118-PD 592 CG15118-PD 1..592 46..637 3090 100 Plus
CG15118-PE 630 CG15118-PE 1..578 1..576 2984 98.6 Plus
CG5742-PB 543 CG5742-PB 84..539 10..505 495 27.1 Plus
CG5742-PA 543 CG5742-PA 84..539 10..505 495 27.1 Plus
CG5742-PC 585 CG5742-PC 84..539 10..505 495 27.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:10:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20625-PA 640 GI20625-PA 1..640 1..637 2825 82.7 Plus
Dmoj\GI20952-PA 520 GI20952-PA 75..516 9..505 475 28 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11759-PA 581 GL11759-PA 1..581 1..637 2570 78.5 Plus
Dper\GL10514-PA 539 GL10514-PA 82..535 11..505 517 28.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:10:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13506-PA 636 GA13506-PA 1..636 1..637 3044 88.8 Plus
Dpse\GA19099-PA 539 GA19099-PA 82..535 11..505 528 28.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:10:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19848-PA 637 GM19848-PA 1..637 1..637 3392 98.7 Plus
Dsec\GM19924-PA 543 GM19924-PA 84..539 10..505 506 28 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:11:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25337-PA 654 GD25337-PA 18..654 1..637 3382 98.4 Plus
Dsim\GD25413-PA 543 GD25413-PA 84..539 10..505 507 28 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19668-PA 641 GJ19668-PA 1..641 1..637 2805 83.5 Plus
Dvir\GJ20674-PA 514 GJ20674-PA 68..510 9..505 479 27.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17840-PA 641 GK17840-PA 1..641 1..637 2791 81.5 Plus
Dwil\GK21343-PA 550 GK21343-PA 77..546 11..505 541 28.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:11:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13859-PA 701 GE13859-PA 1..578 1..576 3035 97.2 Plus
Dyak\GE13932-PA 544 GE13932-PA 76..540 1..505 514 27.5 Plus
Dyak\GE13859-PA 701 GE13859-PA 626..701 562..637 358 90.8 Plus

LD31969.hyp Sequence

Translation from 88 to 2001

> LD31969.hyp
MRSVEEIKAEYPLHWHIWHNELEQLQAAIDQNDKEKIDPRGRTPLMLAVR
LANLPCVKCLLAAKCNATYEYEGWSIVQEAVCTGDVDILTAIIEVRDLQR
HVQRVTHVPKLLQHLLDAPDFYIEMKWEFTSWVPLMSRLCPSDTYKVYKR
GANVRIDTTLLGFDNNTWQRGNRSYIFKGAKETATMIEIDHDTNEVMVEE
MSSDIGDIVAIPPALGTVRARLNAPVITNNIEMDKISFERNKCGIWGWRS
EKSEMINGYNCKVYGASNVEFVTKTRMDHLSEEQIKNKTARTPLHSLLGI
ADEDYVSPADAAAALKDRTPSPRLEEASNAGVENGGRNSPAPGNQSNGSS
AGASGTSTPKSSVTPEEYFTQEFDLHGRDVGGPKNLSTKVQRFRANLWLA
EEHPIRLQEQVLPILDLMSTMASPHVSKLRDFITMQLPAGFPVKVEIPLF
HVLNACITFGNVFALTTPVDHVATLQEQDRVTCLVDDRCFDIPAHYTNRG
SDVRRQIPLDEDDMLQYAIEQSLVETSGACGVDARDDDKVDIWEVLRGQN
VVGSDLLPEDDEQLQRVLQESLLGAHANLQSGSPASDEDDDGGFRYVDPD
LAMAMRLSQQEQRKFELERQQEQEMIEQALKLSLQEH*

LD31969.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG15118-PB 637 CG15118-PB 1..637 1..637 3337 100 Plus
CG15118-PA 637 CG15118-PA 1..637 1..637 3337 100 Plus
CG15118-PD 592 CG15118-PD 1..592 46..637 3090 100 Plus
CG15118-PE 630 CG15118-PE 1..578 1..576 2984 98.6 Plus
CG5742-PB 543 CG5742-PB 84..539 10..505 495 27.1 Plus