Clone LD32003 Report

Search the DGRC for LD32003

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:320
Well:3
Vector:pOT2
Associated Gene/TranscriptCG2747-RD
Protein status:LD32003.pep: gold
Sequenced Size:7059

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2747 2003-01-01 Sim4 clustering to Release 3
CG2747 2008-04-29 Release 5.5 accounting
CG2747 2008-08-15 Release 5.9 accounting
CG2747 2008-12-18 5.12 accounting

Clone Sequence Records

LD32003.complete Sequence

7059 bp (7059 high quality bases) assembled on 2005-10-24

GenBank Submission: BT023946

> LD32003.complete
ACAAACCGTATCGCAACGCAGTGAAAATTCGTGAAAAATTCAATTTTTCC
AGTAAACTAAAAGCAATAACCATGTGAAGAGAGTGATTTTAATTGTAAAC
TTGTTTGTGCACGAAGTGAACCGATCGTTTATAAACAGCGACCATTTTTC
CGCCTCATCGACAAGGGGACGCTCGGAAACTGAGGAGGAGGCTATATCCG
AAATGGAGCTGGCCCACACTTTGATCCTTAATGAGGATGCTCTCAAGCAG
TTGCCCGAACACAAGCGGCCTGTGTTCGAGTTGGAATGGCTGCGCTACTT
GGAGAAGGCCCTGCCACTGGTGTCCAAAGCGGAGATCAAGGCGAGCCAGA
AGAAGCTGGTGCAGCAGCTCTCTGAAAGAATCCAGGGCGCACCAGGTCCG
CCCATTCGTAAGCTCATTGCTAGCGCGTTGGCCACGCTATTCTCCGTTGG
TGACACCTTCATGCTCTTCGACACCGTCAACGCCTGCAATGACATCCTGA
AGAACAAGGACGACTCGCCCAGCTACTTGCCCACAAAGCTTGCCGCCATT
TGTGTGCTGGGCTCTATGTATGAGAAGCTGGGCAGGATGATGGGCCGCAC
CTACGAGGATACGGTGCAGATCCTTATTCGAACGCTTCGCAACGCTGAGT
CGCAGGCGCGGATTGAGATCATGCACACGCTGGAGAAGGTGAGCGCTGGC
ATGGGCACAGCCATTGCCAACGTGCACAAGGATATTTACAAGGCGGCCAA
GCATTGCCTGTTGGACCGAGTTATGGCTGTTCGAGTGGCTGCAGCCCGCT
GCATCCTTAAAATGATATACAGTGCACCATTCCTGTACCAAACGGAGCTG
GAAAGCTTGGGAACATTGTGTTTCCGAGCCTTCGACGGCAGCAACTATGA
AGTGCGATGTGCGGTAGCTCAGCTGCTGGGAACACTTCTAGCCTATACTC
AACAACTGGCAGAAGCGGCAACAAGCAAAAAGAAACAGGGACAAGCGGTG
GCTATTCAAGCGGGCAAGGGAGCTACCCAACGCTTGGTTTCCCTGGATGA
AGCTCTGGGCATTCTCATGTCAGGTTTCCTTCGTGGTGGCGCATCTTTTC
TCAAGGGTACCGGAGAGATTATCAAAGGCAGCTCAGGTGTCAACCGTGAG
GTGCGAGTGGGTGTAACGCATGCATACGTGGTTTTCGTGCAATTCATGGG
CAGCGTTTGGTTGGAACGACAGTTAAGCACATTTCTGGCACACGTTTTGG
ATCTCGTGGCCAATCCAAAGGCAGCGTGCTCCCACGTAGATGCAGTGTAT
TCACGGAAATGCATTAGCTTTATACTCCGATCAACGATTGGAAAGATGCT
AGGCGAGAAGGCGCAGAGCGCTGCCTGCAAGGAACTGGTCCATCTGGTAG
CCAAACAGATGAACTCAATTGACTTCAATCCCGAGAACGCCAAGGATTCT
AATCAAGAAACACTGTTCAGTCAGCACCTGCTGGTGTGTGCCCTCCAGGA
ATTGAGTTCTCTACTTATTGGATTAGGAACCACGGCCCAGAACTTGTTGG
GAGATCAATCCCTGCAAGCGATCGATGCTACCTGTGCCGTATTGGTACAT
CCCTGCGCCGCTGCCCGTTTGGCTGCCGCTTGGTGCTTACGATGCGCTTG
TGTGGCGGTTCCTGGGCAAATCACGCCACTAATTGATCGCTTTGTGGAGG
CCATCGAGCAGATGCGATCCTCGCCAGAAGCAATGGCCGGATATAGCTGC
GCTTTGGCGGCAATTTTGGGAAGCGTTCGGTACTCGCCATTGGGCATACC
CCACACAAAGGGAAAGGTCGTGTTCAACTGTGCGGAGGAACTGCTGCGAT
CTGCTTCCCAGAATAGCCGCATGTCGCTGCACCGTACCCAGGCCGGCTGG
CTATTAATTGGAGCTATAATGACTTTGGGATCGCCGGTAGTCAAGGGCTT
GCTGCCGCGAATGCTGCTACTGTGGCGGAACTCTTTCCCGCGGTCCAACA
AAGAGCTTGAATCGGAAAAGGCGCGCGGCGATGCCTTTACCTGGCAGGTG
ACCCTAGAGGGCAGAGCTGGAGCTCTTTCTGTAATGCACAGCTTCCTGCT
TAATTGCCCGGATCTCCTGAACGAAGACATAACCAGACGACTACTCACCC
CCATCGAAAGCGCCCTGGCCATGTTGGTCAACTTGGCATCTGTCCTAAAG
AGCTATGGAACCCAGCTAAAGGCACCGGCAGCTATGGTGCGGCTTCGTCT
CTTTGAAACGCTGACGCTGCTGCCTGCTAATGCGCTAGAGGCCTCCTATA
CCCATCTTCTTCGCATGCTCGTCTCGGAGTTTACTCTTTCGGATAACGCG
GCCAACACTACAAACTCATTGTTGCGGACGCTTTGTCATGGTGATGATTC
GATCATACTGGGCACCTGGCTGCAAGAAACTAATCATCGCACCATTGAGG
ATCAGCTGCAACCCAATAGCGCCGCGGGATCTGGCGCCTTAGAGCACGAT
CCATGCTGTTTGTACCGTCCCAGGTCTGCCCAAGGCAATGGATCCAGCTC
GAATGGTTCATCAGCAACATCTACTGGTGGAAGCAACGGCGGTGGAGGAA
GCAACATTCAGCAGATCAGCAAGGCCCAACAGTGTCCAGGACCATTGCCA
CTCGGGGTAGCAGTGATCGATATGGCAGTGACTCTGTATGGAACCATTTT
TCCCAAAGTGGCAAACAAGCATAGGCTGCAAATGCTGGAGCACTTTACTG
AGTGCATTCGCCAGGCCAAGAGCAGTCGCCAAGAAGCCGTTCAAATGAAT
ATCTTTACGGCTCTGCTATGCGCTCTAAAAAATCTGACAGATAGCAAGAC
AAGCCTAGGACAGGAGGATGTTCGAAAGAGTGCCACGGCATTGATAGTTG
CTTCGCTGACGAGTGCCAACTCTACCATACGGTGTGCGGCTGGAGAGGCC
TTGGGTCGATTGGCCCAGGTCGTGGGAGATTCTCATTTTACCGCGGAGTT
GGCTCAAAATAGTTTTGATAAACTAAAGTCTGCCAGAGATGTGGTCACGA
GGACGGGACATTCACATGCCCTGGGCTGCCTGCATCGCTATGTGGGTGGC
ATGGGCTCGTCGCAGCATCTGAGCACCAGTGTATCTATCCTTTTGGCCTT
GGGTCAAGATAGTGCATCGCCAGTGGTACAGGCTTGGTCGCTTTATGCTC
TAGCGCAGATTGCCGACTCTGGAGGACCAATGTTCCGCGGCTACGTGGAG
GCAACTTTGACGCTGTGTCTGAAACTTTTACTTACCGTACCCCACGCTCA
TGTTGATGTACATCAGTGTGTGGGCCGTGTAGTCAATGCGTTGATCACCA
CCGTGGGACCGGAGTTGCAAGGAGGAGGAGGCGCAGTGGCCACCATGAGA
GGATCATTCCTCTGCTCAGCAGCTCTTCTTCAATCACATTCGGATCCTCT
TGTACAAGCTGAGGCTATTGGCTGCCTGCAGCAGCTACATCTTTTTGCCA
GTAAATCTCTGCAACTAGAGGAGTTGGTACCCACGCTGGTTGGAATGCTA
GCCTGTAACTATTTCATACTTCGCAAGGCCTCCGTTTCCTGCCTCCGTCA
GTTGGCCCATCGAGAAGCTAAGGAAGTGTGTGAATTAGCTTTAACTATTA
ACGCCGAACAACTTCCGGATTTGGTAATTACGGAGTATGGACTTCCAGGG
CTGCTTTTCTCACTGCTCGACACAGAAACGGATGCCGAGATGCTGAGAAA
CATTCACGATACACTCACATCAATGCTCCAAATGCTGGCTGCAGATAATC
TCAGCTCCTGGTTGAGTCTTTGCAAGAATGTGTTAACCGTTGCTGTGGAA
GGAGGACTAAATGATGATCCCGCTGCTGGGGAACAAAGCAAGAGCAAGGA
GGCTGGTGGAGAAGATGATGAAGAGGACGAGGAGGAAGAGTATGCTGATG
ATGTAACAGAATACCGAGCAGAGGAGAACACATCCACCCATCCAGCAGTG
CAGCCAAGGTGGCCCACTCGTGTTTTCGCCGCCCAGTGCGTGCGGCGGAT
CATAGCCAGCTGTGAGGCTGCCAGTTCAGTGCACTTTGATCTCCTGCAGG
CTAAGGAACAGCAACTTATTCGTTCTCGCGGAGATTACCTCATCCTCCAT
TTAGCGGAACTTATTCGAATGTCCTTTATGGCTGCCACCTCGGACTCGGA
TCAATTGAGATTAGAAGGATTGCGCACCCTGCAGGAAATAATCGATCGAT
TTGCTAACGTTCCGGAACCGGAGTTCCCTGGTCACCTACTCTTGGAGCAG
TTCCAGGCTCAGGTGGGAGCTGCCTTGCGCCCTGCTTTCGCGCCGGATAC
CCCCTCCCATGTGACAGCTGCTGCTTGTGAAGTTTGCTCAGCGTGGATTG
GATCTGGAGTGGCTCGCGACATAGGAGATCTAAAAAGAGTTCACCAGCTG
TTAGTCAGTTCCCTTGATAAGCTTTCCTCAAAAACCAACAGCACTCAGTT
ATATAACGAATCCATGGCTACTTTGGAGAAGCTAAGCATTTTAAAGGCGT
GGGCAGAGGTTTATATTGTGGCCATGATAGGAAATGGAAAGGCTCCGGCT
TCCCTACTGAATCTCCAATCCCAACAATCCGGCTTTCAATCCTTAACCAA
TCTGGAAACGGACTCGGATGTTCCTGACAGTAGGGGTGAAAGTCTTTTAG
GATTAGTGCAACCTGAGCTCCACAATCTTTCAACACACTGGCTGAGTGCT
ATGAAGGATCACGCCTTGCTGCTTCTACCTGCGGAGTTCCAATCCCAACT
ACCGCACGACGGAGGAGCCTTTTACACCACGGACACCATTAATTCGTCAA
AACCACATTACATGACCAGTTGGCCCCCAATCCTCTATGCCTCCGCACTA
TGGTTAAGGGATGAAGGGTTCGCCCGTCATCTAGACACAAGTGAAGCCGC
AGCTGAGTCCAACAATAATCAGATCACTCATGGATCTTTGTCAGCGGATC
GCTTCCATATGATCTTCGGCATCTGCATGGAGGCGCTCTGCAGCATGAGA
AGCTCTGAAAGGCCGAGAAACATTGTGAGCTGCCTTCGCTCACTGCACAG
CATCTTTGATTCTGATTGGGCTAGGAGGCAGTTGGTCAAGGATCGGGCTT
TAACCATTGAACTCTGTCATGTTCTACATCGTCAGATACTGACGAGAGAT
GAATTACTCGTACAACTTCTGTGCGTAGAAATTTTAAAGCAAACAATCCG
CGCTGCTAGGGAAGACTTAGAAAGAAAACGGGACGATAATGCCAATTCTG
AGGACGGAAAGGGTGGAGAGCGACATGGAGAAGATGATTCTATGCAGCCA
GGAAGCTCGCATGTCTACGCCGTTCTGGAGGTTTGTCTTTGCCTATTTGT
TCGCCAAATACCTACGATGAATCCCACGAGGCAGGGAGCTGGTGGCTCCG
GCTTACAGCTGGACTTTGCCTATGCCAAAATGGCCACTGGCTCGTCATTC
TTCTCGGTGCTCGGCGATGAAAACGGCCTGCTAGTATCCAGCGGACTGCA
GTGCGTCGAACAGTTGATGGATTTGTGTACTCCCAAAGGTGCCCTTGCAA
TCCTGCCCACCGTCCTGTATATGACAACCAGTATCGTTAAAGAAATCGCC
AACAAGTCGGCCATAGATAGTACTATCTTGGCAAATACGTGTGCTGTGAA
GTCTGCCCTGCAGTGCTTGCGATCCGTTTGTGTCCACAAGTGGGCTAAAG
TAGAGGAGACAACCGAGGAATGGCAACAGTTACTGCAAAGTGCACTGGCC
ACCATTGTGGATCTCACCAAAACGGCTGGCGATAACGAGGAAAGGAAAGT
CGACGAGGTCACTATGCTGCTGGCCATCACTGTTTTTATTCTACATACTC
CCGCCTCCGTTGTGGCTACACCTTCATTGCAATATCCATGCATTAATCAC
TTCCGGCAGTGCCTGCAGTCGGAGAACCTCTCGGTGAAGCTGCGCTGCAT
CGAGACCACGCGATCGATCTTCGCTCGGGCCGAATTGAAGACGGCAACAC
CCTACATCCACGCACTTGCGCCTAGGATAATCGAATCGTTGTATGCGGAG
TCCAGCAAGGTGCCCACAAGCGAACTGGAGCTACAGGTCACCCTGGAGAG
CATCGTTACCGTGGAGCAGCTTATAGACTTGTCGGAGCCGCAGAACCATA
TTCAGATGCTGACTCTGTTGGTCCCTGTGCTCATTGGCTTCCTAGCGGAA
CCCAGTCGACTCCGGACGCTGCCAAAGTATCAACGGCAGCTGCACGACCA
GGCGCTGCAGTGGCTACTGAAGATCGGTCCGAAATATCCGCAGGAGTTTA
AGGCCCTGATGGGTCAAACACCGGAACTGCGACAAAAACTAGAAGCGGCC
ATTCGCAGCCAACAGCAGTCGATTAACATTGCCCAAAAAGCAAGCGAGGC
GCAGAGGAACCTGCTGGCCAAGCCGCAGAAGCCTACGATCAAGCTGAAGA
CGGATTTCAGTAACTTCCAATGAGCGCCTCCCCCGGGAATCGAACAAAAT
AGTTCTCAAGCTGCTAGTGCTATCATAAAAATGCTTTGTAATACATTGTT
ACCGCATGAACAATAGGATGGATCGGTTCTTTTTATATTGAAAATAAGGT
TTAGACAATTTTGCTCTAATAACTAAATATCCGGGATAAAAGTTTTGAAA
GGATTGTAAAACGGCAACTAAAATATACATTAGTTTTTTTGACTGCTTGT
GTATTAAATTGTTTCGTTTTGCAGGGCGTTTTGCTATAAATATACCTTTT
TTCAAACCTAAGCAATATTTTTAAACTACAATCAGAAAAATGAGCCACCC
TAATGCACATCGGTCCGGCATTTGATTTTGCTGTATGTGAAATACGTTAA
AAGTACCTACAAGTTTATAAATTATTTGTTAGCCATTGTAATGAACTATT
ATATAACGCGATATGAAGTAAAAAATATAAACTTTTAAAGCTTAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAGAAAAAAAAAAAAAAAA
AAAAAAAAA

LD32003.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG2747-RD 7009 CG2747-RD 17..7009 1..6993 34965 100 Plus
CG2747-RB 7042 CG2747-RB 2505..7042 2456..6993 22690 100 Plus
CG2747.a 7284 CG2747.a 2754..7284 2456..6986 22655 100 Plus
CG2747-RB 7042 CG2747-RB 17..2483 1..2467 12290 99.8 Plus
CG2747.a 7284 CG2747.a 388..2732 123..2467 11680 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 3844271..3848014 6197..2454 18660 99.9 Minus
chr3R 27901430 chr3R 3849016..3850656 2181..541 8190 99.9 Minus
chr3R 27901430 chr3R 3842251..3843049 6996..6198 3995 100 Minus
chr3R 27901430 chr3R 3850716..3851133 540..123 2060 99.5 Minus
chr3R 27901430 chr3R 3848681..3848954 2455..2182 1355 99.6 Minus
chr3R 27901430 chr3R 3856717..3856839 123..1 600 99.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:25:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8018208..8021951 6197..2454 18720 100 Minus
3R 32079331 3R 8022953..8024593 2181..541 8205 100 Minus
3R 32079331 3R 8016207..8017005 6996..6198 3995 100 Minus
3R 32079331 3R 8024653..8025070 540..123 2090 100 Minus
3R 32079331 3R 8022618..8022891 2455..2182 1370 100 Minus
3R 32079331 3R 8030645..8030767 123..1 615 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 7759039..7762782 6197..2454 18720 100 Minus
3R 31820162 3R 7763784..7765424 2181..541 8205 100 Minus
3R 31820162 3R 7757038..7757836 6996..6198 3995 100 Minus
3R 31820162 3R 7765484..7765901 540..123 2090 100 Minus
3R 31820162 3R 7763449..7763722 2455..2182 1370 100 Minus
3R 31820162 3R 7771476..7771598 123..1 615 100 Minus
Blast to na_te.dros performed 2019-03-16 20:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 961..1044 6947..7033 202 73.6 Plus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1364..1434 6961..7032 150 69.4 Plus
Tc1 1666 Tc1 TC1 1666bp 65..191 6988..6876 125 65.4 Minus

LD32003.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:34:54 Download gff for LD32003.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 3842254..3843049 6198..6993 100 <- Minus
chr3R 3844271..3848012 2456..6197 99 <- Minus
chr3R 3848681..3848954 2182..2455 99 <- Minus
chr3R 3849016..3850656 541..2181 99 <- Minus
chr3R 3850716..3851132 124..540 99 <- Minus
chr3R 3856717..3856839 1..123 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:17:54 Download gff for LD32003.complete
Subject Subject Range Query Range Percent Splice Strand
CG2747-RB 1..2252 203..2454 100 -> Plus
CG2747-RB 2284..6354 2455..6523 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:45:11 Download gff for LD32003.complete
Subject Subject Range Query Range Percent Splice Strand
CG2747-RC 65..6465 123..6523 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:23:56 Download gff for LD32003.complete
Subject Subject Range Query Range Percent Splice Strand
CG2747-RC 65..6465 123..6523 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:26:06 Download gff for LD32003.complete
Subject Subject Range Query Range Percent Splice Strand
CG2747-RB 1..2252 203..2454 100 -> Plus
CG2747-RB 2284..6354 2455..6523 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:06:42 Download gff for LD32003.complete
Subject Subject Range Query Range Percent Splice Strand
CG2747-RC 65..6465 123..6523 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:17:53 Download gff for LD32003.complete
Subject Subject Range Query Range Percent Splice Strand
CG2747-RA 379..2710 123..2454 100 -> Plus
CG2747-RA 2742..6817 2455..6528 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:45:11 Download gff for LD32003.complete
Subject Subject Range Query Range Percent Splice Strand
CG2747-RD 17..7009 1..6993 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:56 Download gff for LD32003.complete
Subject Subject Range Query Range Percent Splice Strand
CG2747-RD 24..7016 1..6993 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:26:07 Download gff for LD32003.complete
Subject Subject Range Query Range Percent Splice Strand
CG2747-RA 379..2710 123..2454 100 -> Plus
CG2747-RA 2742..6817 2455..6528 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:42 Download gff for LD32003.complete
Subject Subject Range Query Range Percent Splice Strand
CG2747-RD 24..7016 1..6993 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:34:54 Download gff for LD32003.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8016210..8017005 6198..6993 100 <- Minus
3R 8018208..8021949 2456..6197 100 <- Minus
3R 8022618..8022891 2182..2455 100 <- Minus
3R 8022953..8024593 541..2181 100 <- Minus
3R 8024653..8025069 124..540 100 <- Minus
3R 8030645..8030767 1..123 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:34:54 Download gff for LD32003.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8016210..8017005 6198..6993 100 <- Minus
3R 8018208..8021949 2456..6197 100 <- Minus
3R 8022618..8022891 2182..2455 100 <- Minus
3R 8022953..8024593 541..2181 100 <- Minus
3R 8024653..8025069 124..540 100 <- Minus
3R 8030645..8030767 1..123 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:34:54 Download gff for LD32003.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8016210..8017005 6198..6993 100 <- Minus
3R 8018208..8021949 2456..6197 100 <- Minus
3R 8022618..8022891 2182..2455 100 <- Minus
3R 8022953..8024593 541..2181 100 <- Minus
3R 8024653..8025069 124..540 100 <- Minus
3R 8030645..8030767 1..123 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:56 Download gff for LD32003.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3856367..3856489 1..123 100   Minus
arm_3R 3841932..3842727 6198..6993 100 <- Minus
arm_3R 3843930..3847671 2456..6197 100 <- Minus
arm_3R 3848340..3848613 2182..2455 100 <- Minus
arm_3R 3848675..3850315 541..2181 100 <- Minus
arm_3R 3850375..3850791 124..540 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:59:06 Download gff for LD32003.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7757041..7757836 6198..6993 100 <- Minus
3R 7759039..7762780 2456..6197 100 <- Minus
3R 7763449..7763722 2182..2455 100 <- Minus
3R 7763784..7765424 541..2181 100 <- Minus
3R 7765484..7765900 124..540 100 <- Minus
3R 7771476..7771598 1..123 100   Minus

LD32003.hyp Sequence

Translation from 202 to 6522

> LD32003.hyp
MELAHTLILNEDALKQLPEHKRPVFELEWLRYLEKALPLVSKAEIKASQK
KLVQQLSERIQGAPGPPIRKLIASALATLFSVGDTFMLFDTVNACNDILK
NKDDSPSYLPTKLAAICVLGSMYEKLGRMMGRTYEDTVQILIRTLRNAES
QARIEIMHTLEKVSAGMGTAIANVHKDIYKAAKHCLLDRVMAVRVAAARC
ILKMIYSAPFLYQTELESLGTLCFRAFDGSNYEVRCAVAQLLGTLLAYTQ
QLAEAATSKKKQGQAVAIQAGKGATQRLVSLDEALGILMSGFLRGGASFL
KGTGEIIKGSSGVNREVRVGVTHAYVVFVQFMGSVWLERQLSTFLAHVLD
LVANPKAACSHVDAVYSRKCISFILRSTIGKMLGEKAQSAACKELVHLVA
KQMNSIDFNPENAKDSNQETLFSQHLLVCALQELSSLLIGLGTTAQNLLG
DQSLQAIDATCAVLVHPCAAARLAAAWCLRCACVAVPGQITPLIDRFVEA
IEQMRSSPEAMAGYSCALAAILGSVRYSPLGIPHTKGKVVFNCAEELLRS
ASQNSRMSLHRTQAGWLLIGAIMTLGSPVVKGLLPRMLLLWRNSFPRSNK
ELESEKARGDAFTWQVTLEGRAGALSVMHSFLLNCPDLLNEDITRRLLTP
IESALAMLVNLASVLKSYGTQLKAPAAMVRLRLFETLTLLPANALEASYT
HLLRMLVSEFTLSDNAANTTNSLLRTLCHGDDSIILGTWLQETNHRTIED
QLQPNSAAGSGALEHDPCCLYRPRSAQGNGSSSNGSSATSTGGSNGGGGS
NIQQISKAQQCPGPLPLGVAVIDMAVTLYGTIFPKVANKHRLQMLEHFTE
CIRQAKSSRQEAVQMNIFTALLCALKNLTDSKTSLGQEDVRKSATALIVA
SLTSANSTIRCAAGEALGRLAQVVGDSHFTAELAQNSFDKLKSARDVVTR
TGHSHALGCLHRYVGGMGSSQHLSTSVSILLALGQDSASPVVQAWSLYAL
AQIADSGGPMFRGYVEATLTLCLKLLLTVPHAHVDVHQCVGRVVNALITT
VGPELQGGGGAVATMRGSFLCSAALLQSHSDPLVQAEAIGCLQQLHLFAS
KSLQLEELVPTLVGMLACNYFILRKASVSCLRQLAHREAKEVCELALTIN
AEQLPDLVITEYGLPGLLFSLLDTETDAEMLRNIHDTLTSMLQMLAADNL
SSWLSLCKNVLTVAVEGGLNDDPAAGEQSKSKEAGGEDDEEDEEEEYADD
VTEYRAEENTSTHPAVQPRWPTRVFAAQCVRRIIASCEAASSVHFDLLQA
KEQQLIRSRGDYLILHLAELIRMSFMAATSDSDQLRLEGLRTLQEIIDRF
ANVPEPEFPGHLLLEQFQAQVGAALRPAFAPDTPSHVTAAACEVCSAWIG
SGVARDIGDLKRVHQLLVSSLDKLSSKTNSTQLYNESMATLEKLSILKAW
AEVYIVAMIGNGKAPASLLNLQSQQSGFQSLTNLETDSDVPDSRGESLLG
LVQPELHNLSTHWLSAMKDHALLLLPAEFQSQLPHDGGAFYTTDTINSSK
PHYMTSWPPILYASALWLRDEGFARHLDTSEAAAESNNNQITHGSLSADR
FHMIFGICMEALCSMRSSERPRNIVSCLRSLHSIFDSDWARRQLVKDRAL
TIELCHVLHRQILTRDELLVQLLCVEILKQTIRAAREDLERKRDDNANSE
DGKGGERHGEDDSMQPGSSHVYAVLEVCLCLFVRQIPTMNPTRQGAGGSG
LQLDFAYAKMATGSSFFSVLGDENGLLVSSGLQCVEQLMDLCTPKGALAI
LPTVLYMTTSIVKEIANKSAIDSTILANTCAVKSALQCLRSVCVHKWAKV
EETTEEWQQLLQSALATIVDLTKTAGDNEERKVDEVTMLLAITVFILHTP
ASVVATPSLQYPCINHFRQCLQSENLSVKLRCIETTRSIFARAELKTATP
YIHALAPRIIESLYAESSKVPTSELELQVTLESIVTVEQLIDLSEPQNHI
QMLTLLVPVLIGFLAEPSRLRTLPKYQRQLHDQALQWLLKIGPKYPQEFK
ALMGQTPELRQKLEAAIRSQQQSINIAQKASEAQRNLLAKPQKPTIKLKT
DFSNFQ*

LD32003.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG2747-PD 2106 CG2747-PD 1..2106 1..2106 10679 100 Plus
CG2747-PC 2154 CG2747-PC 49..2154 1..2106 10679 100 Plus
CG2747-PA 2165 CG2747-PA 49..2165 1..2106 10657 99.5 Plus
CG2747-PB 2117 CG2747-PB 1..2117 1..2106 10657 99.5 Plus
CG2747-PE 2161 CG2747-PE 49..2161 1..2106 10653 99.6 Plus

LD32003.pep Sequence

Translation from 202 to 6522

> LD32003.pep
MELAHTLILNEDALKQLPEHKRPVFELEWLRYLEKALPLVSKAEIKASQK
KLVQQLSERIQGAPGPPIRKLIASALATLFSVGDTFMLFDTVNACNDILK
NKDDSPSYLPTKLAAICVLGSMYEKLGRMMGRTYEDTVQILIRTLRNAES
QARIEIMHTLEKVSAGMGTAIANVHKDIYKAAKHCLLDRVMAVRVAAARC
ILKMIYSAPFLYQTELESLGTLCFRAFDGSNYEVRCAVAQLLGTLLAYTQ
QLAEAATSKKKQGQAVAIQAGKGATQRLVSLDEALGILMSGFLRGGASFL
KGTGEIIKGSSGVNREVRVGVTHAYVVFVQFMGSVWLERQLSTFLAHVLD
LVANPKAACSHVDAVYSRKCISFILRSTIGKMLGEKAQSAACKELVHLVA
KQMNSIDFNPENAKDSNQETLFSQHLLVCALQELSSLLIGLGTTAQNLLG
DQSLQAIDATCAVLVHPCAAARLAAAWCLRCACVAVPGQITPLIDRFVEA
IEQMRSSPEAMAGYSCALAAILGSVRYSPLGIPHTKGKVVFNCAEELLRS
ASQNSRMSLHRTQAGWLLIGAIMTLGSPVVKGLLPRMLLLWRNSFPRSNK
ELESEKARGDAFTWQVTLEGRAGALSVMHSFLLNCPDLLNEDITRRLLTP
IESALAMLVNLASVLKSYGTQLKAPAAMVRLRLFETLTLLPANALEASYT
HLLRMLVSEFTLSDNAANTTNSLLRTLCHGDDSIILGTWLQETNHRTIED
QLQPNSAAGSGALEHDPCCLYRPRSAQGNGSSSNGSSATSTGGSNGGGGS
NIQQISKAQQCPGPLPLGVAVIDMAVTLYGTIFPKVANKHRLQMLEHFTE
CIRQAKSSRQEAVQMNIFTALLCALKNLTDSKTSLGQEDVRKSATALIVA
SLTSANSTIRCAAGEALGRLAQVVGDSHFTAELAQNSFDKLKSARDVVTR
TGHSHALGCLHRYVGGMGSSQHLSTSVSILLALGQDSASPVVQAWSLYAL
AQIADSGGPMFRGYVEATLTLCLKLLLTVPHAHVDVHQCVGRVVNALITT
VGPELQGGGGAVATMRGSFLCSAALLQSHSDPLVQAEAIGCLQQLHLFAS
KSLQLEELVPTLVGMLACNYFILRKASVSCLRQLAHREAKEVCELALTIN
AEQLPDLVITEYGLPGLLFSLLDTETDAEMLRNIHDTLTSMLQMLAADNL
SSWLSLCKNVLTVAVEGGLNDDPAAGEQSKSKEAGGEDDEEDEEEEYADD
VTEYRAEENTSTHPAVQPRWPTRVFAAQCVRRIIASCEAASSVHFDLLQA
KEQQLIRSRGDYLILHLAELIRMSFMAATSDSDQLRLEGLRTLQEIIDRF
ANVPEPEFPGHLLLEQFQAQVGAALRPAFAPDTPSHVTAAACEVCSAWIG
SGVARDIGDLKRVHQLLVSSLDKLSSKTNSTQLYNESMATLEKLSILKAW
AEVYIVAMIGNGKAPASLLNLQSQQSGFQSLTNLETDSDVPDSRGESLLG
LVQPELHNLSTHWLSAMKDHALLLLPAEFQSQLPHDGGAFYTTDTINSSK
PHYMTSWPPILYASALWLRDEGFARHLDTSEAAAESNNNQITHGSLSADR
FHMIFGICMEALCSMRSSERPRNIVSCLRSLHSIFDSDWARRQLVKDRAL
TIELCHVLHRQILTRDELLVQLLCVEILKQTIRAAREDLERKRDDNANSE
DGKGGERHGEDDSMQPGSSHVYAVLEVCLCLFVRQIPTMNPTRQGAGGSG
LQLDFAYAKMATGSSFFSVLGDENGLLVSSGLQCVEQLMDLCTPKGALAI
LPTVLYMTTSIVKEIANKSAIDSTILANTCAVKSALQCLRSVCVHKWAKV
EETTEEWQQLLQSALATIVDLTKTAGDNEERKVDEVTMLLAITVFILHTP
ASVVATPSLQYPCINHFRQCLQSENLSVKLRCIETTRSIFARAELKTATP
YIHALAPRIIESLYAESSKVPTSELELQVTLESIVTVEQLIDLSEPQNHI
QMLTLLVPVLIGFLAEPSRLRTLPKYQRQLHDQALQWLLKIGPKYPQEFK
ALMGQTPELRQKLEAAIRSQQQSINIAQKASEAQRNLLAKPQKPTIKLKT
DFSNFQ*

LD32003.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16869-PA 2142 GF16869-PA 47..2142 1..2106 10174 93.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24741-PA 2165 GG24741-PA 49..2165 1..2106 11043 97.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15167-PA 2175 GH15167-PA 49..2175 1..2106 9535 86.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG2747-PD 2106 CG2747-PD 1..2106 1..2106 10679 100 Plus
CG2747-PC 2154 CG2747-PC 49..2154 1..2106 10679 100 Plus
CG2747-PA 2165 CG2747-PA 49..2165 1..2106 10657 99.5 Plus
CG2747-PB 2117 CG2747-PB 1..2117 1..2106 10657 99.5 Plus
CG2747-PE 2161 CG2747-PE 49..2161 1..2106 10653 99.6 Plus
CG2747-PF 2172 CG2747-PF 49..2172 1..2106 10631 99.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22493-PA 2173 GI22493-PA 46..2173 1..2106 9628 86.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22338-PA 2169 GL22338-PA 48..2169 1..2106 9943 89.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15452-PA 2169 GA15452-PA 48..2169 1..2106 9925 89.1 Plus
Dpse\GA15452-PB 2122 GA15452-PB 1..2122 1..2106 9924 89.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10436-PA 2166 GM10436-PA 49..2166 1..2106 11146 98.8 Plus
Dsec\GM15026-PA 316 GM15026-PA 1..282 678..947 1353 93.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19437-PA 562 GD19437-PA 49..547 1..499 2639 99.4 Plus
Dsim\GD19438-PA 149 GD19438-PA 1..126 557..679 569 88.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10094-PA 1903 GJ10094-PA 47..1075 1..1020 4737 88.3 Plus
Dvir\GJ10094-PA 1903 GJ10094-PA 1079..1903 1299..2106 3631 82.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13824-PA 2167 GK13824-PA 58..2167 1..2106 9587 87 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25749-PA 2165 GE25749-PA 49..2165 1..2106 11004 97.5 Plus
Dyak\GE25748-PA 286 GE25748-PA 49..117 1..69 348 94.2 Plus