Clone LD32008 Report

Search the DGRC for LD32008

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:320
Well:8
Vector:pOT2
Associated Gene/TranscriptRnp4F-RA
Protein status:LD32008.pep: gold
Preliminary Size:3130
Sequenced Size:3358

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3312 2001-01-01 Release 2 assignment
CG3312 2001-10-10 Blastp of sequenced clone
Rnp4F 2008-04-29 Release 5.5 accounting
Rnp4F 2008-08-15 Release 5.9 accounting
Rnp4F 2008-12-18 5.12 accounting

Clone Sequence Records

LD32008.complete Sequence

3358 bp (3358 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061395

> LD32008.complete
AAAAATTCGCATATTATTCACACTTTACCGGTGTTTCTTGACAGAAAATG
ATAAGTTTTCGTTAACCGAATTCTCAGAAAGTAAGTGCTTGGAAAGTTTT
TCCAAGAAAAAGTGCCCAATAGGGAAACCAAACCTGAAACCAAATAATTT
TCCACGATAAGCGCAACAACGCGATATTAGATTGGCCAGCCCTGCGTTTG
CGGTTTTTTTTTTGTTTTTTTATTTCCTGTATTTTTTTTGGGGGGGAAAA
ATTGCAGTTCCACGGAAAGCGAAAAGTTTTCCACCAAAATAAACGGTTGA
AGCATGGACGCCGACAAGCAGCTGGAAAGGCAGCTGGAGAAGGAGCTGGA
CGAGATGCCGGCAGAGGATTTGGACGACGATGCGTATGACGAGTATGATC
TGATCGTGATACCCGATCAGGGCAAGGGCTCGCCGCAGCAGGGGCACAGT
GAGTCGCCGCAGCAGGAGGAGGAGCACAAGTCGGAGGAGCTGCGCCAACG
ATCGCGCCCAACCTGGCCACCGTCGTCCGCCGGCGGGGATATGACCACCA
TTGAGTTGATCTCATCGGACGACGAGCCGTCAGTGGAGGAGACTGAGGGA
GGCAATGCCGCTGGCCGTGGCAGAGCGCGCAATGATTCCAGCAGCAGTAG
CGATGATGTGGGCGTGATCGAAGGCTCGGAATTGGAATCGAACAGTGAGG
TGTCCAGTGACAGTGACAGTGATAGCGACAACGCTGGCGGCGGAAATCAG
CTAGAGCGCTCGTATCAGGAGCTGAATGCGTTGCCCAGCAAAAAGTTTGC
CCAAATGGTCTCGCTCATTGGAATCGCATTCAAACTGAATGATCTGGAAA
AGATCGAGTCATCGGTGCTGGAGCTGCAAAATTTGGCCACTGTGCCGGCT
CACGTGTGGCTGAAGTATCTAAAGGCCCGCCTGGTCGTCACCCAAACGGA
CGAGGAGCGCAAGGCATTCGAGGAGCAGTGTGCCAAAGCGTTGGGCTACT
ACTACAGCATACCGCTGTCCGAATACGTTGTCAACTACCTGGTGGATCAG
GGCAACGTACAGAACCATGTGCTGTGGGCCAAACTGCTGGCGGACTACGA
CGTGGAGCGTCCAGACTTTGGCGACAAGCTGCGTTCGCTGATATCGACAA
TTACGGACGAAAATGAGGCTGCCGCCTTTGTGGAAATGCTGCAAAAGCAC
TGCGTCACCTGGACGTGCAACGTGGAGCAGCGGCAGATGATCAAGTCCGT
TGTGGACAAGTTTAAGCAACATCTGGACGAGACAACGCGTGGTTGGGATT
GGTCTGAGCAACACAAGGCTCATGTCTACGATGTGGAGACATTATCCCTT
GACGATGACCTCAAAAACGCTGTGATCCGTTTCATATTCGAACGCTCGGT
GGCCAAGTTTCCCATTGTCGATGTGCTCTGGTTATCCTACATTGAGTTCA
TTCAGTTCGAAGGCGTCACTGTGCCGGAGAATGAGGATGAGAATGAGGTA
ACCGCCGAAATGGTAGCCAAACGGGCCAAACGCTTGGGCAAAGGTTTTCT
GCGCAACACGGAACTCGATTTGGCCAATCGTGGTGTGCGCAGTCATCCCA
GTGTACAATTGAATCATCGTTTCCTCGACCTAATGGAGCGCTCGGACTTT
GAGTTGGCGGAAGTGGATGAAGAGATACGTCTCATATTGCAGCGCATTGT
GACCGACATGGATATGACCGTGGAGCTGCATCTGGACTATCTGGCCTATC
GTATTCGCAACACCAATGCCAGCGATGAGCAGCAGGTCGCCAGTCTGCGT
GCCGCCTTCAATCATGCTTGGGAGGAGCTAACCGTGCTCTACGGCGACCA
GGCGGACACCAGGTACGAGGTGCTGCAGTTGTGGGCCCAAGTTGAGTACA
CGCAACTGGGGAGTCCGGACAATGGCCGTGAGATTTGGCGCCAAATAATG
GGCTATCCGGGCAGCTCGATACGCGGCCTGCTCTGGCTGAACTTTGCCCA
GATGGAAAGCGAATACAATGGTGGCCACGGCACACGCGATGTCCTTCGCA
AAGCTCTCTCGCAGCCCGTCCTCGAGAATGGCCTTATGGTGCAGGAGTTT
TTTCGCCGCTATGAACGTTGCTATGGCACCTACGAGTCCATTGCCGCCTG
CCAGGCCCTCGATCTGCCTGTCGAGTATGTGAAGCCGCGTTCCCGCATTA
AGCCCAACTCACAGTCGGCTTATCCTCGCCAGCAGAAGCTTAAGCCGCGC
CAGCAGCAGCAACAAACGAATCGTGAGCCACTGAATCGCGAGCAGCGACG
TCGCCAGGCGCATGAGCAACAACAGCAACAGCAGCAGCAGCAGAAGCATG
GCATTAAGAAGTCCAGAACCGAGCCATCTGGTGGAGCTACGTCACCGCCA
TCGAAAGTCAAGGGGCCAGCGAATGCAGAGGCCAAGGAATCGAACTTTAA
GTATTCGCCCAACATGGAAATCAATAAGATCTTTGTAAGAAATCTGCATC
CCGCTTGCAGCAAGGAGGAGCTGCACGAACTCTTCTCGCCTTTCGGCACC
ATCAAAGATGTGCGCCTGGTGCACAAGCTAAACAAGCAGTTCAAGGGCAT
TGCATACGTTGAGTTCGAGAAGCCGGGCGAGGCGCAACGAGCAGTGGCTG
GACGAGATGGTTGTCTATTCAAGGGCATGAATATCTCTGTGGCCATTTCA
AACCCACCGCCGAGGGGCACATCAGCTGTCAAGCCAAGTGTGGCGCCCAA
GCGACGTGTGCCCACCTCGCTTATACCCACGACTCTGGTGCGCCAAGAGG
TGGCTGCCAAGAAGCTGCGCTTGCTTCTGCCCGAGCCGGGGGACATATCA
TCCACTTCGGCATCCGTCGACGTGGCCATCAAGCGCGAGGCTAATGGAGA
GGAGCAAAAAGGAGATGTTCAAGAACGAGATGAGCAAAAAGGAGAGGAGC
AAAAAGGAGAGGAGCAAAAAGGAGAGGAGCCAAAAGGAGAGGAGCAAAAA
GGAGATGATCAAATAGGAGAGGAGCAAAGTGGAGTGGAGCAAAAGGGAGA
TGAGAAAAAAGAAGAGGAGATGCCAGCTGCTGTGCCCAAGTCAAACGATG
ACTTTCGCAAGCTATTTCTCAAGGATTAGGCGACAAATGCCGGCGGCTGA
GCCCGGTGCCAGCGGCCATGGTTTAGTTTGTAAGACGAAGACGAAGATTT
GGAGCATATATTTTTTTAGATTTAAGGCAACCTAAACAGACAAGGTTGGA
GAACACTGTACAAAGAGAAAAACTGTTGTAAGACAATGATTTTTGTTTCG
ACTCATATAAATTGGTTTCTTGATGAACCAAGTGAAGAAAAAAAAAAAAA
AAAAAAAA

LD32008.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
Rnp4F-RA 3344 Rnp4F-RA 3..3344 1..3342 16710 100 Plus
Rnp4F.a 3281 Rnp4F.a 1..2174 1..2174 10870 100 Plus
Rnp4F-RE 3396 Rnp4F-RE 1..1952 1..1952 9760 100 Plus
Rnp4F-RE 3396 Rnp4F-RE 2005..3396 1951..3342 6960 100 Plus
Rnp4F.a 3281 Rnp4F.a 2175..3281 2236..3342 5535 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5213103..5214048 1952..1007 4685 99.7 Minus
chrX 22417052 chrX 5211473..5212127 3337..2683 3260 99.8 Minus
chrX 22417052 chrX 5212543..5213050 2458..1951 2540 100 Minus
chrX 22417052 chrX 5214364..5214876 830..318 2535 99.6 Minus
chrX 22417052 chrX 5214935..5215255 321..1 1605 100 Minus
chrX 22417052 chrX 5214106..5214282 1007..831 870 99.4 Minus
chrX 22417052 chrX 5212358..5212478 2579..2459 605 100 Minus
chrX 22417052 chrX 5212199..5212301 2682..2580 500 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:25:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5320558..5321503 1952..1007 4730 100 Minus
X 23542271 X 5318923..5319582 3342..2683 3300 100 Minus
X 23542271 X 5321819..5322331 830..318 2565 100 Minus
X 23542271 X 5319998..5320505 2458..1951 2540 100 Minus
X 23542271 X 5322390..5322710 321..1 1605 100 Minus
X 23542271 X 5321561..5321737 1007..831 885 100 Minus
X 23542271 X 5319813..5319933 2579..2459 605 100 Minus
X 23542271 X 5319654..5319756 2682..2580 515 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 5328656..5329601 1952..1007 4730 100 Minus
X 23527363 X 5327021..5327680 3342..2683 3300 100 Minus
X 23527363 X 5329917..5330429 830..318 2565 100 Minus
X 23527363 X 5328096..5328603 2458..1951 2540 100 Minus
X 23527363 X 5330488..5330808 321..1 1605 100 Minus
X 23527363 X 5329659..5329835 1007..831 885 100 Minus
X 23527363 X 5327911..5328031 2579..2459 605 100 Minus
X 23527363 X 5327752..5327854 2682..2580 515 100 Minus
Blast to na_te.dros performed 2019-03-15 13:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6948 2230..2406 235 63.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6946 2230..2376 201 63.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6788..6906 2230..2348 198 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6953 2243..2475 195 57.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2499 2230..2402 191 59.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2823..2995 2230..2406 191 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6864 2230..2348 190 62.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2388..2512 2230..2348 188 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2407 2247..2348 186 64.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2625..2810 2230..2407 161 61.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2785..2964 2231..2402 159 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2457..2569 2251..2373 152 61.8 Plus
roo 9092 roo DM_ROO 9092bp 1052..1149 2243..2342 152 65.3 Plus
roo 9092 roo DM_ROO 9092bp 1036..1163 2206..2335 150 59.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6827..6944 2230..2347 131 56.8 Plus

LD32008.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:43:30 Download gff for LD32008.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5211473..5211739 3071..3337 100 == Minus
chrX 5211871..5212127 2683..2939 100 <- Minus
chrX 5212199..5212301 2580..2682 99 <- Minus
chrX 5212358..5212478 2459..2579 100 <- Minus
chrX 5212543..5213049 1952..2458 93 <- Minus
chrX 5213104..5214048 1007..1951 99 <- Minus
chrX 5214107..5214282 831..1006 99 <- Minus
chrX 5214364..5214843 351..830 99 == Minus
chrX 5214935..5215255 1..321 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:13:22 Download gff for LD32008.complete
Subject Subject Range Query Range Percent Splice Strand
Rnp4F-RD 1..2826 304..3129 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:35:44 Download gff for LD32008.complete
Subject Subject Range Query Range Percent Splice Strand
Rnp4F-RD 1..2826 304..3129 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:09:30 Download gff for LD32008.complete
Subject Subject Range Query Range Percent Splice Strand
Rnp4F-RA 1..2826 304..3129 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:04:26 Download gff for LD32008.complete
Subject Subject Range Query Range Percent Splice Strand
Rnp4F-RD 1..2826 304..3129 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:38:07 Download gff for LD32008.complete
Subject Subject Range Query Range Percent Splice Strand
Rnp4F-RA 1..2826 304..3129 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:15:47 Download gff for LD32008.complete
Subject Subject Range Query Range Percent Splice Strand
Rnp4F-RA 1..3337 1..3337 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:35:43 Download gff for LD32008.complete
Subject Subject Range Query Range Percent Splice Strand
Rnp4F-RA 1..3337 1..3337 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:09:30 Download gff for LD32008.complete
Subject Subject Range Query Range Percent Splice Strand
Rnp4F-RA 1..3323 15..3337 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:04:26 Download gff for LD32008.complete
Subject Subject Range Query Range Percent Splice Strand
Rnp4F-RA 1..3337 1..3337 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:38:07 Download gff for LD32008.complete
Subject Subject Range Query Range Percent Splice Strand
Rnp4F-RA 1..3323 15..3337 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:43:30 Download gff for LD32008.complete
Subject Subject Range Query Range Percent Splice Strand
X 5318928..5319582 2683..3337 100 <- Minus
X 5319654..5319756 2580..2682 100 <- Minus
X 5319813..5319933 2459..2579 100 <- Minus
X 5319998..5320504 1952..2458 100 <- Minus
X 5320559..5321503 1007..1951 100 <- Minus
X 5321562..5321737 831..1006 100 <- Minus
X 5321819..5322327 322..830 100 <- Minus
X 5322390..5322710 1..321 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:43:30 Download gff for LD32008.complete
Subject Subject Range Query Range Percent Splice Strand
X 5318928..5319582 2683..3337 100 <- Minus
X 5319654..5319756 2580..2682 100 <- Minus
X 5319813..5319933 2459..2579 100 <- Minus
X 5319998..5320504 1952..2458 100 <- Minus
X 5320559..5321503 1007..1951 100 <- Minus
X 5321562..5321737 831..1006 100 <- Minus
X 5321819..5322327 322..830 100 <- Minus
X 5322390..5322710 1..321 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:43:30 Download gff for LD32008.complete
Subject Subject Range Query Range Percent Splice Strand
X 5318928..5319582 2683..3337 100 <- Minus
X 5319654..5319756 2580..2682 100 <- Minus
X 5319813..5319933 2459..2579 100 <- Minus
X 5319998..5320504 1952..2458 100 <- Minus
X 5320559..5321503 1007..1951 100 <- Minus
X 5321562..5321737 831..1006 100 <- Minus
X 5321819..5322327 322..830 100 <- Minus
X 5322390..5322710 1..321 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:09:30 Download gff for LD32008.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5213846..5213966 2459..2579 100 <- Minus
arm_X 5212961..5213615 2683..3337 100 <- Minus
arm_X 5213687..5213789 2580..2682 100 <- Minus
arm_X 5214031..5214537 1952..2458 100 <- Minus
arm_X 5214592..5215536 1007..1951 100 <- Minus
arm_X 5215595..5215770 831..1006 100 <- Minus
arm_X 5215852..5216360 322..830 100 <- Minus
arm_X 5216423..5216743 1..321 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:40:27 Download gff for LD32008.complete
Subject Subject Range Query Range Percent Splice Strand
X 5327026..5327680 2683..3337 100 <- Minus
X 5327752..5327854 2580..2682 100 <- Minus
X 5327911..5328031 2459..2579 100 <- Minus
X 5328096..5328602 1952..2458 100 <- Minus
X 5328657..5329601 1007..1951 100 <- Minus
X 5329660..5329835 831..1006 100 <- Minus
X 5329917..5330425 322..830 100 <- Minus
X 5330488..5330808 1..321 100   Minus

LD32008.pep Sequence

Translation from 303 to 3128

> LD32008.pep
MDADKQLERQLEKELDEMPAEDLDDDAYDEYDLIVIPDQGKGSPQQGHSE
SPQQEEEHKSEELRQRSRPTWPPSSAGGDMTTIELISSDDEPSVEETEGG
NAAGRGRARNDSSSSSDDVGVIEGSELESNSEVSSDSDSDSDNAGGGNQL
ERSYQELNALPSKKFAQMVSLIGIAFKLNDLEKIESSVLELQNLATVPAH
VWLKYLKARLVVTQTDEERKAFEEQCAKALGYYYSIPLSEYVVNYLVDQG
NVQNHVLWAKLLADYDVERPDFGDKLRSLISTITDENEAAAFVEMLQKHC
VTWTCNVEQRQMIKSVVDKFKQHLDETTRGWDWSEQHKAHVYDVETLSLD
DDLKNAVIRFIFERSVAKFPIVDVLWLSYIEFIQFEGVTVPENEDENEVT
AEMVAKRAKRLGKGFLRNTELDLANRGVRSHPSVQLNHRFLDLMERSDFE
LAEVDEEIRLILQRIVTDMDMTVELHLDYLAYRIRNTNASDEQQVASLRA
AFNHAWEELTVLYGDQADTRYEVLQLWAQVEYTQLGSPDNGREIWRQIMG
YPGSSIRGLLWLNFAQMESEYNGGHGTRDVLRKALSQPVLENGLMVQEFF
RRYERCYGTYESIAACQALDLPVEYVKPRSRIKPNSQSAYPRQQKLKPRQ
QQQQTNREPLNREQRRRQAHEQQQQQQQQQKHGIKKSRTEPSGGATSPPS
KVKGPANAEAKESNFKYSPNMEINKIFVRNLHPACSKEELHELFSPFGTI
KDVRLVHKLNKQFKGIAYVEFEKPGEAQRAVAGRDGCLFKGMNISVAISN
PPPRGTSAVKPSVAPKRRVPTSLIPTTLVRQEVAAKKLRLLLPEPGDISS
TSASVDVAIKREANGEEQKGDVQERDEQKGEEQKGEEQKGEEPKGEEQKG
DDQIGEEQSGVEQKGDEKKEEEMPAAVPKSNDDFRKLFLKD*

LD32008.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20948-PA 857 GF20948-PA 107..855 148..938 2103 54.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18501-PA 896 GG18501-PA 1..896 1..941 3407 72.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24363-PA 799 GH24363-PA 42..797 128..938 1312 36.9 Plus
Dgri\GH23233-PA 773 GH23233-PA 42..771 128..938 1231 35.4 Plus
Dgri\GH10308-PA 407 GH10308-PA 42..399 128..495 622 37.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
Rnp4F-PF 941 CG3312-PF 1..941 1..941 4864 100 Plus
Rnp4F-PD 941 CG3312-PD 1..941 1..941 4864 100 Plus
Rnp4F-PA 941 CG3312-PA 1..941 1..941 4864 100 Plus
Rnp4F-PB 941 CG3312-PB 1..941 1..941 4864 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11056-PA 785 GI11056-PA 9..733 113..851 1311 39 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14328-PA 772 GL14328-PA 52..733 149..857 1056 33.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17297-PA 772 GA17297-PA 52..733 149..857 1061 34.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12648-PA 223 GM12648-PA 88..223 787..941 401 64.3 Plus
Dsec\GM12648-PA 223 GM12648-PA 1..55 1..55 220 80 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16573-PA 792 GJ16573-PA 38..790 124..938 1493 40.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16926-PA 806 GK16926-PA 73..766 150..856 1573 46.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16818-PA 903 GE16818-PA 1..903 1..941 3347 72.3 Plus

LD32008.hyp Sequence

Translation from 303 to 3128

> LD32008.hyp
MDADKQLERQLEKELDEMPAEDLDDDAYDEYDLIVIPDQGKGSPQQGHSE
SPQQEEEHKSEELRQRSRPTWPPSSAGGDMTTIELISSDDEPSVEETEGG
NAAGRGRARNDSSSSSDDVGVIEGSELESNSEVSSDSDSDSDNAGGGNQL
ERSYQELNALPSKKFAQMVSLIGIAFKLNDLEKIESSVLELQNLATVPAH
VWLKYLKARLVVTQTDEERKAFEEQCAKALGYYYSIPLSEYVVNYLVDQG
NVQNHVLWAKLLADYDVERPDFGDKLRSLISTITDENEAAAFVEMLQKHC
VTWTCNVEQRQMIKSVVDKFKQHLDETTRGWDWSEQHKAHVYDVETLSLD
DDLKNAVIRFIFERSVAKFPIVDVLWLSYIEFIQFEGVTVPENEDENEVT
AEMVAKRAKRLGKGFLRNTELDLANRGVRSHPSVQLNHRFLDLMERSDFE
LAEVDEEIRLILQRIVTDMDMTVELHLDYLAYRIRNTNASDEQQVASLRA
AFNHAWEELTVLYGDQADTRYEVLQLWAQVEYTQLGSPDNGREIWRQIMG
YPGSSIRGLLWLNFAQMESEYNGGHGTRDVLRKALSQPVLENGLMVQEFF
RRYERCYGTYESIAACQALDLPVEYVKPRSRIKPNSQSAYPRQQKLKPRQ
QQQQTNREPLNREQRRRQAHEQQQQQQQQQKHGIKKSRTEPSGGATSPPS
KVKGPANAEAKESNFKYSPNMEINKIFVRNLHPACSKEELHELFSPFGTI
KDVRLVHKLNKQFKGIAYVEFEKPGEAQRAVAGRDGCLFKGMNISVAISN
PPPRGTSAVKPSVAPKRRVPTSLIPTTLVRQEVAAKKLRLLLPEPGDISS
TSASVDVAIKREANGEEQKGDVQERDEQKGEEQKGEEQKGEEPKGEEQKG
DDQIGEEQSGVEQKGDEKKEEEMPAAVPKSNDDFRKLFLKD*

LD32008.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:35:58
Subject Length Description Subject Range Query Range Score Percent Strand
Rnp4F-PF 941 CG3312-PF 1..941 1..941 4864 100 Plus
Rnp4F-PD 941 CG3312-PD 1..941 1..941 4864 100 Plus
Rnp4F-PA 941 CG3312-PA 1..941 1..941 4864 100 Plus
Rnp4F-PB 941 CG3312-PB 1..941 1..941 4864 100 Plus