BDGP Sequence Production Resources |
Search the DGRC for LD32009
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 320 |
Well: | 9 |
Vector: | pOT2 |
Associated Gene/Transcript | Drep-2-RA |
Protein status: | LD32009.pep: gold |
Preliminary Size: | 4370 |
Sequenced Size: | 5216 |
Gene | Date | Evidence |
---|---|---|
CG1975 | 2001-01-01 | Release 2 assignment |
CG1975 | 2001-07-04 | Blastp of sequenced clone |
CG1975 | 2003-01-01 | Sim4 clustering to Release 3 |
Rep2 | 2008-04-29 | Release 5.5 accounting |
Rep2 | 2008-08-15 | Release 5.9 accounting |
Rep2 | 2008-12-18 | 5.12 accounting |
5216 bp (5216 high quality bases) assembled on 2001-07-04
GenBank Submission: AY060400
> LD32009.complete TTGCCGAAAATAAAAATTGATTTGCATTTCTTCTCGGCTTAAAATGAATT AAATGTTATTGTTTCCGCACCGAAAAAACTCATAAATCGTTAAAACAACA AATTCCGAAATCGGAATTAATTCGAACAATTGAACAACTGCCAAAAACTA GAACGTATGTGAAGCGTGTGTGTCGTACATACCAAGAGATAAGGACAAAA AACGGTTAAAAGAAAGCTTTCAAGAAAGAGAGTATAGAAAATAAATTTTA CTAAAGTAACAAAAAAAAAACAACGAAACGCGTGTGCGTGTGCAACAAAA AAGTGTATGTCAAATAAGAAAATGTGGCTCCAGCGATAACGGTACTCCAA TGTGCTCTCTCGCACGCACACAGAAGCATCCCGCACACGTACACCACCAC CACTGCCAAAAAGCAAATCCTGCCCAACAGCCGCACCTATAAAAGTGGGC GTGGGTTGACCCAAGTTACTGTAACAAATTTGCAAAAAGTGATGCATGCT AATTGTTTAAACAAATCCCAGCTTTCCTAATCAAATACCTTTGCGAATTC CAATACACACCTATACACACATACCCACGCAGTGATTGGTGTGGAGAGGA AGAAGGAAAGGAAGCCAAAGGACAGGATAGAAAAGCAAGAGGAAGAACGA AACAGCATCGGCGCGTTGGAGAAATGTGCGGGAAGAGAAGATTGAAAATA AACGTGTAGTAGAGAATTTTTGAGACACTCACACGCACACACTCCTCCCA CACTCTTTCTCTCTGTCTCTCCGTCTATACCGCTTGCCGCCTACACACAC ACATACTTAAGTAGACGCACGAGAGTTCTCGTATCGCGAAAAGCGTGTGC TTTGTTGTTGCCTCTCCCACTCCCTCGCTCTAAGAGGCGCTCCCGTGTTG TTTTTGTTGTTATTGCCGCTGAGCAAATGGCAGACCCTCTAAGCGGGTGC CGCTGGTGATAACATGTCGTAATGGCCAGAGAGGAGTCTCGCGGCAAGAG ACCACTGAAAATCTGGGACAGCTGGCGGAATGTGCGCAAGGGCGTCGTAG TTGGGACCTTCGAGGAGCTCTTGGTCCGCGGCAAGGATAAGCTGGGGGTT CCTGCTTCAGAACCGGTGCGCGTTGTTCTGGAGTGTGATGGAACCCAAAT CGAGGATGGCGAATACTTTCGCACCCTGGCCAACAATACGGTGCTGCTGC TGTTAAGGCAGGGCGAGCGCTGGTATCCCACTGGCGTCGATGTCATAAAG GCTGCCATATCAGCTATACCGAAAATCGTCTGTGAGACGATTCATGCGCT GGAGTTGCACGATGAGACACCGTCGTGGAAGATCATGGATAACAAAGGGC GTGTCACGGTCGTTCTGCACTGGGATCAGCGGCAGGGTGGAGGAAGCGGC GGCGGAGGAGGAGGCGGTGGCGCCGGCGGCGGAGTGGGGAGCATGTGCTC CGGCCTGGGCAGCAGCAATGGGCTGCTGTCGTCCGATAAGTACTCGCCCT CAAAGAAGGGCCTCTCCGCGCAGAGTTCGCTGGACAACAAGTCGGTGTCG TCGCAGTCCTCCCAGCCGCGCTATGCCAGCCCTCAAATAACGGTGATCAG CGACGACGGACCGGCGAGCATATACCATCCCGGTGGCGTTGTTCTGCCGC CAGGAGTTGTGATACCCGGCGGCAGCAGGCGACTCTCCAAGCAGGGAAGC TCCTTCGACAGCACCGTAGGCGTGGGTGTGGGAGCTGTCCATGTGCACAC GCCGGAATGCGCCCACCACGCCCACACGCCCAGCAGGGCGGGCAGTCCCA GCACCACCGAGTGCGACTTCCACTGCTGTGCGCTGCACGAGGAGGGGCGC AAGATCGCTGTGCACAAGAGCGTGGCCACGTCGCCCATCCAGGACGGAAG CAGCAGTCCCCAGCCGCAGTCGGCACCATCGGTTATGGATCCTATGCTGG GCGGCAGCGGTGGCGGCGGAAGCGGCAGCATGCAACGCCGCTCCTCGGGC GCCAAGGGCCATGTGCGATTCCTGGACATCGCTCCCGAGCGGGATAGCTC CGAGAGCGAAACGGAGAACACGGTGATGGAGGACGACAAGACGACGACGG AGAAGTTTCTGCTGCTGATCGACCAGTTGTCGGTGGACCAGAAGCGTCAC CTCAGCATCAAGGACATCGGCATCATACTGGAACGCCTCAACTCCAAGAT CCTTGACGTGGAGCGATTGGATCGCGAGTCCGAGTCAGACGACTGCTACA ACTGGACGATAAAGGCGACAATACGCGGCGATGCGCTGCGCGAACTGGGC GTCATTTACAATGGCAATTACTATGCCATCTCTGAGCATCCTGGCTACAA GGAGGAGCTAGAGGAGAACGGCGAGGAGGTCGAGGAGGAGGAGGAAGAGG ATGAGGAGGACAGAATTTAGAGTGCCAATGACAGGCAGACGGGCAAACCC ACAGGTTCATGACTGTCCCACGTTGGGCGCCACAGAAGGTATCAATAAAC TAGCGCATTTTACAGAAACCAAAACGAAAAAATGGAAAAACCCAAAATAA GAGTAGCCCAGCAGCTCGACACAAGAACACACACACAAACACACACCAAC ATGCATACATATATACATATATACTTATATAAAATAATTACGAGAATATA ATAATGCAAGTCGCACATTGTACAATAGTGAAGTAAGCGTAAACGTGAAT TATAAAAAGGCGAAAGCAAAGCAGCCACACACCCAGAAACACATACACCC ATGCCCACAACAACAGCAACAAGCGCGAACCACTTAAGAGCAGTTTTTGT AGCATTTATCCAATATTCTCATTGACGGGGACCGACGTTACCATAAATCA GAAGCATGGCTGGTTGGAGACGTCGAAGAATATCACTGCACCGTCTGCAG CCAGCTTAACGAATTCTGAATTCGCAAAATTCAATTCAAACGCCCCAAAA TTTAGCCCACAGATCAGTTGCAAGCCCCCAAATCAGCCATCCTTGTGTTG TTATCGTTGTTGTACAATAGATGTTCCGTGTTCCGTTGTGATTGTGTGCC AAAATAGCCTTATTTAGTTGGATAGCCCCACAAACAGACTGCCACTCGAG TCAGGAAATCTAATCTAACCCCAAAGACTATAAGTTGTGAAAGAGATATA GATAACAGAGACTATAAAATGTTGTTGCCAGAAAAACGATGATGACGCGG GGTCTAATTGTAGTTGGTCGGTCTCTCTTTTCCTATGTAGTGAGTTCCTC ATTTTAATTTGCTTAACGAACCCCCAACCCGCATTTGTATAGTTCCTGGA CAGCGTAACTCTCTGTTAGTGGCCTATTCTTTGTTAATCTTGTTGCATTT CTGCCCCCAAAGAAATTCCGGAAATCATCCGCATCAGCATGTAAAACTGC CGTTATTTGTAGTGTTGTCAAACGTTCAACAAATCGCGCACAATGTTAAA ATTAAACACAGAGAATAGAAACAATAAGCAAGACGCTCGATGATGCTCGA TGCTCGCCAAATGCCTGACGACAGACTAAAAAATTATGTGTAGTAGATAA AGACCGCCCCCGCATGGCCGACAGAATCAGCCGTAGATCCATTGGGAGTA TGTATCAGAAGACATCACACGATCGCAATCGAAATCGTAATTGAAAAATG CGTAAAAGCGAAAACACTGCCAACATCGCCATTAGCATTCGCACCTGCAT CCACATTCGTTGGGTTAGGCTTTCGACTTCCAGAACTTTGACTGTTCCAT ACGGGTATCAAGCAATCGGGATAAATTGAGAGAGCACTGGGTTGGAGGAT TCTTGGCAAGGACATGGAAGGTTTAGGCGATGGATGTGCCAACGTAATGA ATATAATACTATCGAAAGGAAGCACGTACGTTTTAGTGTGGGTAAACTAA CCAATGAACCTAAACATTCTCTGAATTGTTTGAATATATTATGCTCCTAG TTTATACTTTATAGTTGATATTTGAAAATTATTATAACATCATTGTTCGA CTTGTTTTGTTAATGTCACTTAGACTTGTTTTTACTGCAGACTTGAGTTC TTATTGTTAAGGCATCTCCCACTTGGGATTGCTATTCAGAAAGGGTCGTC ATAGGTAGTCCATTGCAAACGTAGCTGGTCTACGTTGCTAGTCACTGTGT CCTGGATTAGATCTGTGTGCATTCGATTTAGAAACTTCCGCTGCGCAATT AGATCCTAAGACCTTATGCTGAGATCAGCCAACACTGTACTCCCATCTAA CCAAAACTAACTTAAATGTAAAACGGAATCGAGAAGTGGAATAAGAAAGC GACTTTTAACAGACATTTGTCCAAGGCACAAAACTAAAGCATTGAAGCGA AAAAAGATTAAATGAAAACCTAGTATGTATAAATGAAAATTGAAATTGAT AATTGATTGATAACGATAATAAATGAAAAGTTAGTGGAGAGCGGAGCAGG CGATGAAGAAGAACGTTAAACGAGAACTCACAATTAGCGAGACGAAAAAA AAATTCATTAGCGTTGTTTTAATTTATTAGTAAGTCGAGAACGACAAGCG ACCCAAAACTCGATGATGAATATATCTCCATGTGTATGTATGTATGATTA AAGGACGGAGTACGAGGGAGGGGAGTCGAGTTATAGAGGTTGAGGAGAGG AAGGTAGAACGGAAATACCTATGCATAACATAGTTATAAGACGGGAACTC GCAATATGATGGTAACTCAACTTCAAAACCGATACAGACTTCTTCAGCTG ACTTCCATAATCATAATCATTGTTAACACTTAACTATAGAGGATAACGCT TTAAACGAACAAACACACACTTACATACACGAACCTTGGTTGCGGTTGAG TTAGTAATAACCTATAGGTTCTGTTCCAGTTCCAGTTCCACATCACGATC CTGACCCAACCTGCCCCGCCCCTTTCTGACCCTTCCCTTTCCTTCCCTGC CCCTCCACTCAGACTCGTCGTCACACACTCTGTGTAAATGCAATCAGTTA GATTTATAAGATGAATAACAAGTCAACACGAATGTAAGACATCCCCAGAA GGCATTAATTAAGCTACGAAACAATTTGCAAATAATACTCATAGAGCGCG AGTCGAGGCAGAAGATGCAACATCATGCGTTACATTGTTTTAATATGCGA ATTACGATAAATTGATCAATTAACATATACATACAACAAAGAACAAACAA AAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 5185795..5189733 | 1254..5198 | 19395 | 99.6 | Plus |
chr2R | 21145070 | chr2R | 5179417..5180401 | 1..984 | 4770 | 99.2 | Plus |
chr2R | 21145070 | chr2R | 5184793..5185065 | 982..1254 | 1365 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 9298266..9302213 | 1254..5201 | 19740 | 100 | Plus |
2R | 25286936 | 2R | 9291887..9292870 | 1..984 | 4920 | 100 | Plus |
2R | 25286936 | 2R | 9297264..9297536 | 982..1254 | 1365 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 9299465..9303412 | 1254..5201 | 19740 | 100 | Plus |
2R | 25260384 | 2R | 9293086..9294069 | 1..984 | 4920 | 100 | Plus |
2R | 25260384 | 2R | 9298463..9298735 | 982..1254 | 1365 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 512..657 | 179..324 | 135 | 60.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 5179417..5180009 | 1..592 | 99 | == | Plus |
chr2R | 5180065..5180400 | 648..983 | 98 | -> | Plus |
chr2R | 5184795..5185065 | 984..1254 | 100 | -> | Plus |
chr2R | 5185796..5186887 | 1255..2349 | 96 | == | Plus |
chr2R | 5186949..5187114 | 2411..2576 | 99 | == | Plus |
chr2R | 5187168..5189733 | 2632..5198 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rep2-RA | 1..1449 | 972..2420 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Drep-2-RC | 1..1449 | 972..2420 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Drep-2-RA | 1..1449 | 972..2420 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rep2-RA | 1..1449 | 972..2420 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Drep-2-RA | 1..1449 | 972..2420 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rep2-RA | 31..5228 | 1..5198 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Drep-2-RA | 31..5228 | 1..5198 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Drep-2-RA | 32..5229 | 1..5198 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rep2-RA | 31..5228 | 1..5198 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Drep-2-RA | 32..5229 | 1..5198 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9291887..9292869 | 1..983 | 100 | -> | Plus |
2R | 9297266..9297536 | 984..1254 | 100 | -> | Plus |
2R | 9298267..9302210 | 1255..5198 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9291887..9292869 | 1..983 | 100 | -> | Plus |
2R | 9297266..9297536 | 984..1254 | 100 | -> | Plus |
2R | 9298267..9302210 | 1255..5198 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9291887..9292869 | 1..983 | 100 | -> | Plus |
2R | 9297266..9297536 | 984..1254 | 100 | -> | Plus |
2R | 9298267..9302210 | 1255..5198 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 5179392..5180374 | 1..983 | 100 | -> | Plus |
arm_2R | 5184771..5185041 | 984..1254 | 100 | -> | Plus |
arm_2R | 5185772..5189715 | 1255..5198 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9293086..9294068 | 1..983 | 100 | -> | Plus |
2R | 9298465..9298735 | 984..1254 | 100 | -> | Plus |
2R | 9299466..9303409 | 1255..5198 | 100 | Plus |
Translation from 971 to 2419
> LD32009.hyp MAREESRGKRPLKIWDSWRNVRKGVVVGTFEELLVRGKDKLGVPASEPVR VVLECDGTQIEDGEYFRTLANNTVLLLLRQGERWYPTGVDVIKAAISAIP KIVCETIHALELHDETPSWKIMDNKGRVTVVLHWDQRQGGGSGGGGGGGG AGGGVGSMCSGLGSSNGLLSSDKYSPSKKGLSAQSSLDNKSVSSQSSQPR YASPQITVISDDGPASIYHPGGVVLPPGVVIPGGSRRLSKQGSSFDSTVG VGVGAVHVHTPECAHHAHTPSRAGSPSTTECDFHCCALHEEGRKIAVHKS VATSPIQDGSSSPQPQSAPSVMDPMLGGSGGGGSGSMQRRSSGAKGHVRF LDIAPERDSSESETENTVMEDDKTTTEKFLLLIDQLSVDQKRHLSIKDIG IILERLNSKILDVERLDRESESDDCYNWTIKATIRGDALRELGVIYNGNY YAISEHPGYKEELEENGEEVEEEEEEDEEDRI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Drep-2-PC | 482 | CG1975-PC | 1..482 | 1..482 | 2520 | 100 | Plus |
Drep-2-PA | 482 | CG1975-PA | 1..482 | 1..482 | 2520 | 100 | Plus |
Drep-2-PD | 497 | CG1975-PD | 17..497 | 2..482 | 2503 | 99.6 | Plus |
Drep-2-PB | 549 | CG1975-PB | 72..549 | 5..482 | 2501 | 100 | Plus |
Translation from 971 to 2419
> LD32009.pep MAREESRGKRPLKIWDSWRNVRKGVVVGTFEELLVRGKDKLGVPASEPVR VVLECDGTQIEDGEYFRTLANNTVLLLLRQGERWYPTGVDVIKAAISAIP KIVCETIHALELHDETPSWKIMDNKGRVTVVLHWDQRQGGGSGGGGGGGG AGGGVGSMCSGLGSSNGLLSSDKYSPSKKGLSAQSSLDNKSVSSQSSQPR YASPQITVISDDGPASIYHPGGVVLPPGVVIPGGSRRLSKQGSSFDSTVG VGVGAVHVHTPECAHHAHTPSRAGSPSTTECDFHCCALHEEGRKIAVHKS VATSPIQDGSSSPQPQSAPSVMDPMLGGSGGGGSGSMQRRSSGAKGHVRF LDIAPERDSSESETENTVMEDDKTTTEKFLLLIDQLSVDQKRHLSIKDIG IILERLNSKILDVERLDRESESDDCYNWTIKATIRGDALRELGVIYNGNY YAISEHPGYKEELEENGEEVEEEEEEDEEDRI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11819-PA | 608 | GF11819-PA | 125..608 | 5..482 | 2458 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23432-PA | 478 | GG23432-PA | 1..478 | 1..482 | 2495 | 99 | Plus |
Dere\GG20243-PA | 262 | GG20243-PA | 115..186 | 10..84 | 157 | 44 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20347-PA | 534 | GH20347-PA | 55..515 | 5..460 | 2097 | 92.6 | Plus |
Dgri\GH20857-PA | 301 | GH20857-PA | 12..89 | 6..84 | 155 | 39.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Drep2-PC | 482 | CG1975-PC | 1..482 | 1..482 | 2520 | 100 | Plus |
Drep2-PA | 482 | CG1975-PA | 1..482 | 1..482 | 2520 | 100 | Plus |
Drep2-PD | 497 | CG1975-PD | 17..497 | 2..482 | 2503 | 99.6 | Plus |
Drep2-PB | 549 | CG1975-PB | 72..549 | 5..482 | 2501 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20016-PA | 539 | GI20016-PA | 60..520 | 5..460 | 2086 | 92.1 | Plus |
Dmoj\GI20962-PA | 286 | GI20962-PA | 13..88 | 8..84 | 154 | 37.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17583-PA | 476 | GL17583-PA | 1..476 | 1..482 | 2379 | 94.9 | Plus |
Dper\GL17094-PA | 311 | GL17094-PA | 9..86 | 6..84 | 154 | 39.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15166-PA | 476 | GA15166-PA | 1..476 | 1..482 | 2379 | 94.9 | Plus |
Dpse\GA15166-PB | 539 | GA15166-PB | 68..539 | 5..482 | 2367 | 94.8 | Plus |
Dpse\GA21015-PA | 310 | GA21015-PA | 9..86 | 6..84 | 153 | 39.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21115-PA | 387 | GM21115-PA | 1..270 | 1..280 | 1207 | 91.1 | Plus |
Dsec\GM21115-PA | 387 | GM21115-PA | 252..365 | 347..460 | 601 | 100 | Plus |
Dsec\GM21330-PA | 258 | GM21330-PA | 109..182 | 8..84 | 156 | 42.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10649-PA | 481 | GD10649-PA | 1..481 | 1..482 | 2513 | 99.8 | Plus |
Dsim\GD10838-PA | 258 | GD10838-PA | 109..182 | 8..84 | 156 | 42.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21264-PA | 505 | GJ21264-PA | 55..485 | 47..460 | 1888 | 90 | Plus |
Dvir\GJ20683-PA | 288 | GJ20683-PA | 13..91 | 9..87 | 156 | 40 | Plus |