Clone LD32040 Report

Search the DGRC for LD32040

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:320
Well:40
Vector:pOT2
Associated Gene/Transcriptmsb1l-RA
Protein status:LD32040.pep: gold
Preliminary Size:1496
Sequenced Size:1350

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10364 2001-01-01 Release 2 assignment
CG10364 2001-07-04 Blastp of sequenced clone
CG10364 2003-01-01 Sim4 clustering to Release 3
msb1l 2008-04-29 Release 5.5 accounting
msb1l 2008-08-15 Release 5.9 accounting
msb1l 2008-12-18 5.12 accounting

Clone Sequence Records

LD32040.complete Sequence

1350 bp (1350 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051807

> LD32040.complete
ATTTTATTTTACCCCGCAACATTTAGTGAGAAGTCGCAAAATAAGTCAGA
TTATTTGATTAAAATGGGAGCAAAGGCAACAAAAATGGAAGGTGAATATC
TGCCGGATACGCCGACACTAAACAAAATGCGCCTGGCCAGCGAAAAGCGA
GAACAAATGGAAATGACGACGCCGAATCGAGAGCAAAACAACGCTTTGCT
CGATCCTCGATCACCAAATGGCTGCCGCACGCCTTTAACCTTCTTGCAGG
CGTCAAAACCTCGCGTTGAGGAGGAGGAGCAGCATGTGACCACCAGTGAA
AATGCCTTCTCCATGCTGCGAAAACGTTTGCTCAAGGGCTTCTCCCTGAA
CGATCCTCGCTCTCCTCAGCTGAATCGCACTCCACTGGTCCTCGATGAGG
TTCGTTCGCTTAATATGGATGACACATTCGCCGATCTCTTCGTGGACACC
AGGGTGGGTACAGCACAGAGAGCAGTGCCTGCATCACCGCCCCAAGTGGA
TTTAGAGGAGAGCTGCGATAGCTTCGGCACACCGCCGTCTGCTGCACACA
ACAATATTTCCCTGGAGATTGTTTCACTGCCCTATGATCAGGAAGAAACC
TTGCCTTGCGAGCAACAGCTGCTGCCGTATCAGGAGCCGAATCTGGAGCA
GGGCCAGGTGAAAATGGCCACGCCCCCGCCAGAACAGCAGCCCCATGGTG
ATCCCCGATCGCCCAGCCTGGGCGTCGATCGCACACCCATCATCTTCTGC
GACGACGAGGAGGAGGAGGCACGCGAGGCCCAGATGCTGGAGCACATCCT
GGAAACACTGACCCTGAATCTCAGCACTGGCAGCAGCATGGCCTCCTTTG
TCGCTGGCGAGGAGCAGCTACCAGAAGTGCCGTCGAACAAACATTTGGAG
CGAGTGCGTTTGGGTCACAAGCGTCGTGTGCCACCGCGCAAGCCCGCCAG
AGCCAACAAGCCAAAGATCTATGTTGACCAAGAGGAGGGGTCCCCGGTGA
CCGGAGGATCCATTACGCCCAAGACAAACAGTACCCCCCTGTCCGCACAA
AAGCGAACTCCACTCAGTTGCGTTAAGAATAAGCCGCATCTGCGATCCCG
TTCAATGGAAAAGGATTCTAAGAAGAATCAGATTCCGCCCGCGCAGAGCT
TCAACGATCAACTGCGGATAATCTCTGGCACAGAGGGATTCAGCGGACCC
GTTTACTAACACAGCTTAGTAGCTACTATTGCCTTATGTCCATCAAAACC
CACCAAATCATAGTCTTTTCTCACGACACATACTTTTATTACTCATCTTT
TAATAAATCATTTTATTAGTTTGCTTGCCAGTAAAAAAAAAAAAAAAAAA

LD32040.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
msb1l-RA 1438 msb1l-RA 93..1425 1..1333 6665 100 Plus
msb1l.b 1397 msb1l.b 306..1397 241..1332 5460 100 Plus
msb1l.a 1183 msb1l.a 92..1183 241..1332 5460 100 Plus
msb1l.b 1397 msb1l.b 1..240 1..240 1200 100 Plus
msb1l.a 1183 msb1l.a 1..91 1..91 455 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19576575..19577666 241..1332 5445 99.9 Plus
chr2L 23010047 chr2L 19576270..19576509 1..240 1200 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:25:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19578040..19579132 241..1333 5465 100 Plus
2L 23513712 2L 19577735..19577974 1..240 1200 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19578040..19579132 241..1333 5465 100 Plus
2L 23513712 2L 19577735..19577974 1..240 1200 100 Plus
Blast to na_te.dros performed on 2019-03-16 05:16:33 has no hits.

LD32040.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:17:20 Download gff for LD32040.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19576270..19576509 1..240 100 -> Plus
chr2L 19576575..19577666 241..1332 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:13:29 Download gff for LD32040.complete
Subject Subject Range Query Range Percent Splice Strand
msb1l-RA 1..1146 64..1209 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:19:13 Download gff for LD32040.complete
Subject Subject Range Query Range Percent Splice Strand
msb1l-RA 1..1146 64..1209 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:09:23 Download gff for LD32040.complete
Subject Subject Range Query Range Percent Splice Strand
msb1l-RA 1..1146 64..1209 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:50:49 Download gff for LD32040.complete
Subject Subject Range Query Range Percent Splice Strand
msb1l-RA 1..1146 64..1209 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:01:59 Download gff for LD32040.complete
Subject Subject Range Query Range Percent Splice Strand
msb1l-RA 1..1146 64..1209 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:14:52 Download gff for LD32040.complete
Subject Subject Range Query Range Percent Splice Strand
msb1l-RA 31..1362 1..1332 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:19:13 Download gff for LD32040.complete
Subject Subject Range Query Range Percent Splice Strand
msb1l-RA 31..1362 1..1332 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:23 Download gff for LD32040.complete
Subject Subject Range Query Range Percent Splice Strand
msb1l-RA 35..1366 1..1332 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:50:50 Download gff for LD32040.complete
Subject Subject Range Query Range Percent Splice Strand
msb1l-RA 31..1362 1..1332 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:01:59 Download gff for LD32040.complete
Subject Subject Range Query Range Percent Splice Strand
msb1l-RA 35..1366 1..1332 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:17:20 Download gff for LD32040.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19577735..19577974 1..240 100 -> Plus
2L 19578040..19579131 241..1332 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:17:20 Download gff for LD32040.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19577735..19577974 1..240 100 -> Plus
2L 19578040..19579131 241..1332 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:17:20 Download gff for LD32040.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19577735..19577974 1..240 100 -> Plus
2L 19578040..19579131 241..1332 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:23 Download gff for LD32040.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19577735..19577974 1..240 100 -> Plus
arm_2L 19578040..19579131 241..1332 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:29:10 Download gff for LD32040.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19577735..19577974 1..240 100 -> Plus
2L 19578040..19579131 241..1332 100   Plus

LD32040.hyp Sequence

Translation from 0 to 1208

> LD32040.hyp
ILFYPATFSEKSQNKSDYLIKMGAKATKMEGEYLPDTPTLNKMRLASEKR
EQMEMTTPNREQNNALLDPRSPNGCRTPLTFLQASKPRVEEEEQHVTTSE
NAFSMLRKRLLKGFSLNDPRSPQLNRTPLVLDEVRSLNMDDTFADLFVDT
RVGTAQRAVPASPPQVDLEESCDSFGTPPSAAHNNISLEIVSLPYDQEET
LPCEQQLLPYQEPNLEQGQVKMATPPPEQQPHGDPRSPSLGVDRTPIIFC
DDEEEEAREAQMLEHILETLTLNLSTGSSMASFVAGEEQLPEVPSNKHLE
RVRLGHKRRVPPRKPARANKPKIYVDQEEGSPVTGGSITPKTNSTPLSAQ
KRTPLSCVKNKPHLRSRSMEKDSKKNQIPPAQSFNDQLRIISGTEGFSGP
VY*

LD32040.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
msb1l-PA 381 CG10364-PA 1..381 22..402 1983 100 Plus

LD32040.pep Sequence

Translation from 63 to 1208

> LD32040.pep
MGAKATKMEGEYLPDTPTLNKMRLASEKREQMEMTTPNREQNNALLDPRS
PNGCRTPLTFLQASKPRVEEEEQHVTTSENAFSMLRKRLLKGFSLNDPRS
PQLNRTPLVLDEVRSLNMDDTFADLFVDTRVGTAQRAVPASPPQVDLEES
CDSFGTPPSAAHNNISLEIVSLPYDQEETLPCEQQLLPYQEPNLEQGQVK
MATPPPEQQPHGDPRSPSLGVDRTPIIFCDDEEEEAREAQMLEHILETLT
LNLSTGSSMASFVAGEEQLPEVPSNKHLERVRLGHKRRVPPRKPARANKP
KIYVDQEEGSPVTGGSITPKTNSTPLSAQKRTPLSCVKNKPHLRSRSMEK
DSKKNQIPPAQSFNDQLRIISGTEGFSGPVY*

LD32040.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14252-PA 370 GF14252-PA 1..347 1..361 1120 69.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21201-PA 381 GG21201-PA 1..381 1..381 1840 90.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13428-PA 375 GH13428-PA 1..352 1..367 765 50.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
msb1l-PA 381 CG10364-PA 1..381 1..381 1983 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13947-PA 355 GI13947-PA 1..355 1..372 930 56.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25555-PA 385 GL25555-PA 1..370 1..367 1043 61.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10275-PA 385 GA10275-PA 1..370 1..367 1039 61.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17372-PA 381 GM17372-PA 1..381 1..381 1941 96.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24228-PA 380 GD24228-PA 1..380 1..381 1931 96.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18232-PA 372 GJ18232-PA 1..351 8..367 865 54.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14920-PA 377 GK14920-PA 1..377 1..381 934 54.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13275-PA 381 GE13275-PA 1..381 1..381 1772 91.3 Plus