BDGP Sequence Production Resources |
Search the DGRC for LD32040
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 320 |
Well: | 40 |
Vector: | pOT2 |
Associated Gene/Transcript | msb1l-RA |
Protein status: | LD32040.pep: gold |
Preliminary Size: | 1496 |
Sequenced Size: | 1350 |
Gene | Date | Evidence |
---|---|---|
CG10364 | 2001-01-01 | Release 2 assignment |
CG10364 | 2001-07-04 | Blastp of sequenced clone |
CG10364 | 2003-01-01 | Sim4 clustering to Release 3 |
msb1l | 2008-04-29 | Release 5.5 accounting |
msb1l | 2008-08-15 | Release 5.9 accounting |
msb1l | 2008-12-18 | 5.12 accounting |
1350 bp (1350 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051807
> LD32040.complete ATTTTATTTTACCCCGCAACATTTAGTGAGAAGTCGCAAAATAAGTCAGA TTATTTGATTAAAATGGGAGCAAAGGCAACAAAAATGGAAGGTGAATATC TGCCGGATACGCCGACACTAAACAAAATGCGCCTGGCCAGCGAAAAGCGA GAACAAATGGAAATGACGACGCCGAATCGAGAGCAAAACAACGCTTTGCT CGATCCTCGATCACCAAATGGCTGCCGCACGCCTTTAACCTTCTTGCAGG CGTCAAAACCTCGCGTTGAGGAGGAGGAGCAGCATGTGACCACCAGTGAA AATGCCTTCTCCATGCTGCGAAAACGTTTGCTCAAGGGCTTCTCCCTGAA CGATCCTCGCTCTCCTCAGCTGAATCGCACTCCACTGGTCCTCGATGAGG TTCGTTCGCTTAATATGGATGACACATTCGCCGATCTCTTCGTGGACACC AGGGTGGGTACAGCACAGAGAGCAGTGCCTGCATCACCGCCCCAAGTGGA TTTAGAGGAGAGCTGCGATAGCTTCGGCACACCGCCGTCTGCTGCACACA ACAATATTTCCCTGGAGATTGTTTCACTGCCCTATGATCAGGAAGAAACC TTGCCTTGCGAGCAACAGCTGCTGCCGTATCAGGAGCCGAATCTGGAGCA GGGCCAGGTGAAAATGGCCACGCCCCCGCCAGAACAGCAGCCCCATGGTG ATCCCCGATCGCCCAGCCTGGGCGTCGATCGCACACCCATCATCTTCTGC GACGACGAGGAGGAGGAGGCACGCGAGGCCCAGATGCTGGAGCACATCCT GGAAACACTGACCCTGAATCTCAGCACTGGCAGCAGCATGGCCTCCTTTG TCGCTGGCGAGGAGCAGCTACCAGAAGTGCCGTCGAACAAACATTTGGAG CGAGTGCGTTTGGGTCACAAGCGTCGTGTGCCACCGCGCAAGCCCGCCAG AGCCAACAAGCCAAAGATCTATGTTGACCAAGAGGAGGGGTCCCCGGTGA CCGGAGGATCCATTACGCCCAAGACAAACAGTACCCCCCTGTCCGCACAA AAGCGAACTCCACTCAGTTGCGTTAAGAATAAGCCGCATCTGCGATCCCG TTCAATGGAAAAGGATTCTAAGAAGAATCAGATTCCGCCCGCGCAGAGCT TCAACGATCAACTGCGGATAATCTCTGGCACAGAGGGATTCAGCGGACCC GTTTACTAACACAGCTTAGTAGCTACTATTGCCTTATGTCCATCAAAACC CACCAAATCATAGTCTTTTCTCACGACACATACTTTTATTACTCATCTTT TAATAAATCATTTTATTAGTTTGCTTGCCAGTAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
msb1l-RA | 1438 | msb1l-RA | 93..1425 | 1..1333 | 6665 | 100 | Plus |
msb1l.b | 1397 | msb1l.b | 306..1397 | 241..1332 | 5460 | 100 | Plus |
msb1l.a | 1183 | msb1l.a | 92..1183 | 241..1332 | 5460 | 100 | Plus |
msb1l.b | 1397 | msb1l.b | 1..240 | 1..240 | 1200 | 100 | Plus |
msb1l.a | 1183 | msb1l.a | 1..91 | 1..91 | 455 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 19576270..19576509 | 1..240 | 100 | -> | Plus |
chr2L | 19576575..19577666 | 241..1332 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msb1l-RA | 1..1146 | 64..1209 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msb1l-RA | 1..1146 | 64..1209 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msb1l-RA | 1..1146 | 64..1209 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msb1l-RA | 1..1146 | 64..1209 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msb1l-RA | 1..1146 | 64..1209 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msb1l-RA | 31..1362 | 1..1332 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msb1l-RA | 31..1362 | 1..1332 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msb1l-RA | 35..1366 | 1..1332 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msb1l-RA | 31..1362 | 1..1332 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
msb1l-RA | 35..1366 | 1..1332 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19577735..19577974 | 1..240 | 100 | -> | Plus |
2L | 19578040..19579131 | 241..1332 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19577735..19577974 | 1..240 | 100 | -> | Plus |
2L | 19578040..19579131 | 241..1332 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19577735..19577974 | 1..240 | 100 | -> | Plus |
2L | 19578040..19579131 | 241..1332 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 19577735..19577974 | 1..240 | 100 | -> | Plus |
arm_2L | 19578040..19579131 | 241..1332 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19577735..19577974 | 1..240 | 100 | -> | Plus |
2L | 19578040..19579131 | 241..1332 | 100 | Plus |
Translation from 0 to 1208
> LD32040.hyp ILFYPATFSEKSQNKSDYLIKMGAKATKMEGEYLPDTPTLNKMRLASEKR EQMEMTTPNREQNNALLDPRSPNGCRTPLTFLQASKPRVEEEEQHVTTSE NAFSMLRKRLLKGFSLNDPRSPQLNRTPLVLDEVRSLNMDDTFADLFVDT RVGTAQRAVPASPPQVDLEESCDSFGTPPSAAHNNISLEIVSLPYDQEET LPCEQQLLPYQEPNLEQGQVKMATPPPEQQPHGDPRSPSLGVDRTPIIFC DDEEEEAREAQMLEHILETLTLNLSTGSSMASFVAGEEQLPEVPSNKHLE RVRLGHKRRVPPRKPARANKPKIYVDQEEGSPVTGGSITPKTNSTPLSAQ KRTPLSCVKNKPHLRSRSMEKDSKKNQIPPAQSFNDQLRIISGTEGFSGP VY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
msb1l-PA | 381 | CG10364-PA | 1..381 | 22..402 | 1983 | 100 | Plus |
Translation from 63 to 1208
> LD32040.pep MGAKATKMEGEYLPDTPTLNKMRLASEKREQMEMTTPNREQNNALLDPRS PNGCRTPLTFLQASKPRVEEEEQHVTTSENAFSMLRKRLLKGFSLNDPRS PQLNRTPLVLDEVRSLNMDDTFADLFVDTRVGTAQRAVPASPPQVDLEES CDSFGTPPSAAHNNISLEIVSLPYDQEETLPCEQQLLPYQEPNLEQGQVK MATPPPEQQPHGDPRSPSLGVDRTPIIFCDDEEEEAREAQMLEHILETLT LNLSTGSSMASFVAGEEQLPEVPSNKHLERVRLGHKRRVPPRKPARANKP KIYVDQEEGSPVTGGSITPKTNSTPLSAQKRTPLSCVKNKPHLRSRSMEK DSKKNQIPPAQSFNDQLRIISGTEGFSGPVY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14252-PA | 370 | GF14252-PA | 1..347 | 1..361 | 1120 | 69.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21201-PA | 381 | GG21201-PA | 1..381 | 1..381 | 1840 | 90.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13428-PA | 375 | GH13428-PA | 1..352 | 1..367 | 765 | 50.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
msb1l-PA | 381 | CG10364-PA | 1..381 | 1..381 | 1983 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13947-PA | 355 | GI13947-PA | 1..355 | 1..372 | 930 | 56.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25555-PA | 385 | GL25555-PA | 1..370 | 1..367 | 1043 | 61.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10275-PA | 385 | GA10275-PA | 1..370 | 1..367 | 1039 | 61.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17372-PA | 381 | GM17372-PA | 1..381 | 1..381 | 1941 | 96.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24228-PA | 380 | GD24228-PA | 1..380 | 1..381 | 1931 | 96.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18232-PA | 372 | GJ18232-PA | 1..351 | 8..367 | 865 | 54.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14920-PA | 377 | GK14920-PA | 1..377 | 1..381 | 934 | 54.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13275-PA | 381 | GE13275-PA | 1..381 | 1..381 | 1772 | 91.3 | Plus |