Clone LD32109 Report

Search the DGRC for LD32109

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:321
Well:9
Vector:pOT2
Associated Gene/TranscriptBrf-RA
Protein status:LD32109.pep: gold
Preliminary Size:2254
Sequenced Size:2270

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5419 2001-01-01 Release 2 assignment
CG4155 2001-01-01 Release 2 assignment
CG31256 2001-07-04 Blastp of sequenced clone
CG31256 2003-01-01 Sim4 clustering to Release 3
Brf 2008-04-29 Release 5.5 accounting
Brf 2008-08-15 Release 5.9 accounting
Brf 2008-12-18 5.12 accounting

Clone Sequence Records

LD32109.complete Sequence

2270 bp (2270 high quality bases) assembled on 2005-08-22

GenBank Submission: AY051811

> LD32109.complete
TTTTCCAAGCGTGTTGATTCAATTGGCAACAAATTGCAAATTGTTTAAAA
AAGACTCGAAAATGGCTTTCAAATGACAGCAAACAAGTAGTTTAAACTGT
CAAAACAACGGATAAAAACGAAGCGTTGCAGGTGGCAGTGTTTATTAAAG
CAAAGAACAAACAATCATGTCTACGGGCCTAAAATGTCGCAATTGCGGAT
CCAACGAGATCGAGGAAGACAATGCTCGCGGAGATCGAGTTTGCATGAAC
TGCGGCTCGGTATTGGAGGATTCCCTCATTGTTTCCGAAGTGCAGTTCGA
GGAAGTTGGCCATGGAGCAGCCGCAATTGGCCAGTTTGTGTCCGCCGAGT
CGTCGGGCGGTGCCACCAACTATGGCTACGGCAAGTTTCAGGTGGGATCG
GGCACCGAATCCCGCGAGGTGACCATCAAAAAGGCCAAGAAGGACATCAC
ACTACTCTGCCAGCAGCTGCAGCTATCCCAGCACTATGCAGATACTGCTC
TGAATTTCTTCAAGATGGCATTGGGTAGGCATCTGACCCGCGGTAGGAAG
AGCACCCACATCTACGCCGCTTGCGTGTACATGACCTGCAGGACAGAGGG
CACCTCCCATCTCCTCATCGACATCAGCGACGTACAGCAAATCTGTTCCT
ATGAGCTTGGTCGTACCTACTTAAAGTTATCGCATGCCCTTTGTATCAAC
ATACCTTCTCTGGACCCGTGTTTATACATCATGCGTTTTGCCAACCGACT
GCAGTTGGGTGCCAAAACGCACGAGGTTTCGATGACGGCTCTGAGGATTG
TCCAGCGCATGAAAAAGGACTGCATGCACTCGGGACGACGACCCACTGGC
CTTTGTGGAGCAGCTTTGCTGATTGCGGCCCGGATGCACGATTTTAGTCG
CACCATGCTGGACGTGATAGGTGTGGTCAAGATACACGAGTCAACGCTCC
GAAAGCGTCTTTCGGAGTTTGCTGAAACGCCCTCGGGAGGGCTAACCCTG
GAGGAGTTCATGACCGTTGACTTGGAGCGCGAACAGGATCCGCCTTCCTT
TAAGGCAGCACGCAAAAAGGATCGTGAGAGAATCAAAGATATGGGCGAGC
ATGAGCTAACAGAATTGCAAAAAGAAATTGATGCTCATCTGGAAAAAGAT
CTAGGCAAGTACTCAAACTCCGTTTACCGTCAGCTGACTAAGGGTAAGGG
ATTAAGTCCACTGAGCTCTCCAAGCACGCCCAATAGCAGCTCGGAAAAGG
ATATTGAACTGGAGGAGTCCAGGCAGTTCATTGAACAATCTAATGCAGAG
GTAATCAAGGAATTGATAGCCAAGAACGAGGACGTGAAGAAGTCAGAACC
GGGTGGTTTGGTGGCTGGGATTGAAGGCCTGCGGCCGGATATCGAGGCTA
TTTGCAGGGTGACCCAGAGCGATCTGGAGGACGTGGAAAAGGCTAAGCAG
CCGCAAGAACAAGAACTCATCACCGACGATCTGAACGACGACGAACTGGA
TCAGTACGTTCTGACAGAGGAGGAGTCGGTGGCAAAGTTGGAAATGTGGA
AGAACCTCAATGCCGAGTATCTGCAAGAGCAGAAGGAACGCGACGAGCGG
CTGGCCAAGGAACGCGAGGAGGGAAAGCCGGAGCGGAAGAAGCGAAAGCC
ACGCAAGAAAGTCATTGGTCCCTCCTCCACCGCCGGCGAGGCCATTGAAA
AGATGCTGCAGGAGAAGAAGATCTCCAGTAAGATCAACTACGAGATTCTC
AAGACCCTGACTGACGGCATGGGCGGGCTGACGGATGACTCTCCCACAAC
TAGTGCCGATACCAAACCGAGCACTCTGGAAGAGCTGAAGCATCAGCCGG
TTATAGTGGAAGAAGGTCCTGTTGCTTCCAAGAGTAGGGGCAATAGGGCA
GCCTACGATCTGCCCGGACCCAGTAGGAAACGTCCCAAACTTGAAGTGGG
TCTGCCAGTCAGCAAAGCTGCTGATGTGGAGCAGGCGGAGACCAAGCCAG
CAGTTGTGGTGGAAGCAGATGACCTGGACGAAGATGCTGATGATCCTGAC
GTCGAACCCGAGGCAGAACCGGAGGCCACTCTTCAGGACATGCTCAACAC
GGGCGGAGACGACGATGAGTTCGGCTACGGTTTTGACGAGGAGGAGGAAT
ACTAGGCATAAGCTCGCATTTAGCGTTTAAAGCATTTTAGTATATATATA
CACTCAGACTTTATAGTACCCGACCCACTCGTAATACAATTAAACTAAGC
ATTAAAAAAAAAAAAAAAAA

LD32109.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
Brf.a 3065 Brf.a 111..2365 1..2255 11275 100 Plus
Brf-RA 3076 Brf-RA 111..2365 1..2255 11275 100 Plus
Brf-RB 2363 Brf-RB 111..2363 1..2253 11265 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 13200242..13201169 2018..1091 4610 99.8 Minus
chr3R 27901430 chr3R 13215056..13215426 608..238 1825 99.5 Minus
chr3R 27901430 chr3R 13199944..13200181 2253..2016 1190 100 Minus
chr3R 27901430 chr3R 13215486..13215724 239..1 1180 99.6 Minus
chr3R 27901430 chr3R 13201225..13201453 1090..862 1145 100 Minus
chr3R 27901430 chr3R 13201515..13201665 863..713 755 100 Minus
chr3R 27901430 chr3R 13214892..13214996 713..609 525 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:26:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17375844..17376771 2018..1091 4640 100 Minus
3R 32079331 3R 17390660..17391030 608..238 1855 100 Minus
3R 32079331 3R 17375544..17375783 2255..2016 1200 100 Minus
3R 32079331 3R 17391090..17391328 239..1 1195 100 Minus
3R 32079331 3R 17376827..17377055 1090..862 1145 100 Minus
3R 32079331 3R 17377117..17377267 863..713 755 100 Minus
3R 32079331 3R 17390496..17390600 713..609 525 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 17116675..17117602 2018..1091 4640 100 Minus
3R 31820162 3R 17131491..17131861 608..238 1855 100 Minus
3R 31820162 3R 17116375..17116614 2255..2016 1200 100 Minus
3R 31820162 3R 17131921..17132159 239..1 1195 100 Minus
3R 31820162 3R 17117658..17117886 1090..862 1145 100 Minus
3R 31820162 3R 17117948..17118098 863..713 755 100 Minus
3R 31820162 3R 17131327..17131431 713..609 525 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:47:16 has no hits.

LD32109.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:48:15 Download gff for LD32109.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 13199944..13200178 2019..2253 100 <- Minus
chr3R 13200242..13201169 1091..2018 99 <- Minus
chr3R 13201225..13201451 864..1090 100 <- Minus
chr3R 13201515..13201664 714..863 100 <- Minus
chr3R 13214892..13214996 609..713 100 <- Minus
chr3R 13215056..13215424 240..608 99 <- Minus
chr3R 13215486..13215724 1..239 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:11:46 Download gff for LD32109.complete
Subject Subject Range Query Range Percent Splice Strand
Brf-RA 1..1989 167..2155 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:54:21 Download gff for LD32109.complete
Subject Subject Range Query Range Percent Splice Strand
Brf-RB 1..1989 167..2155 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:41:48 Download gff for LD32109.complete
Subject Subject Range Query Range Percent Splice Strand
Brf-RA 1..1989 167..2155 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:35:12 Download gff for LD32109.complete
Subject Subject Range Query Range Percent Splice Strand
Brf-RA 1..1989 167..2155 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:26:39 Download gff for LD32109.complete
Subject Subject Range Query Range Percent Splice Strand
Brf-RA 1..1989 167..2155 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:11:42 Download gff for LD32109.complete
Subject Subject Range Query Range Percent Splice Strand
Brf-RA 5..2257 1..2253 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:54:21 Download gff for LD32109.complete
Subject Subject Range Query Range Percent Splice Strand
Brf-RA 5..2257 1..2253 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:41:48 Download gff for LD32109.complete
Subject Subject Range Query Range Percent Splice Strand
Brf-RA 10..2262 1..2253 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:35:12 Download gff for LD32109.complete
Subject Subject Range Query Range Percent Splice Strand
Brf-RA 5..2257 1..2253 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:26:39 Download gff for LD32109.complete
Subject Subject Range Query Range Percent Splice Strand
Brf-RA 10..2262 1..2253 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:48:15 Download gff for LD32109.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17375546..17375780 2019..2253 100 <- Minus
3R 17375844..17376771 1091..2018 100 <- Minus
3R 17376827..17377053 864..1090 100 <- Minus
3R 17377117..17377266 714..863 100 <- Minus
3R 17390496..17390600 609..713 100 <- Minus
3R 17390660..17391028 240..608 100 <- Minus
3R 17391090..17391328 1..239 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:48:15 Download gff for LD32109.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17375546..17375780 2019..2253 100 <- Minus
3R 17375844..17376771 1091..2018 100 <- Minus
3R 17376827..17377053 864..1090 100 <- Minus
3R 17377117..17377266 714..863 100 <- Minus
3R 17390496..17390600 609..713 100 <- Minus
3R 17390660..17391028 240..608 100 <- Minus
3R 17391090..17391328 1..239 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:48:15 Download gff for LD32109.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17375546..17375780 2019..2253 100 <- Minus
3R 17375844..17376771 1091..2018 100 <- Minus
3R 17376827..17377053 864..1090 100 <- Minus
3R 17377117..17377266 714..863 100 <- Minus
3R 17390496..17390600 609..713 100 <- Minus
3R 17390660..17391028 240..608 100 <- Minus
3R 17391090..17391328 1..239 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:41:48 Download gff for LD32109.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13201268..13201502 2019..2253 100 <- Minus
arm_3R 13201566..13202493 1091..2018 100 <- Minus
arm_3R 13202549..13202775 864..1090 100 <- Minus
arm_3R 13202839..13202988 714..863 100 <- Minus
arm_3R 13216218..13216322 609..713 100 <- Minus
arm_3R 13216382..13216750 240..608 100 <- Minus
arm_3R 13216812..13217050 1..239 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:13:38 Download gff for LD32109.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17117948..17118097 714..863 100 <- Minus
3R 17131327..17131431 609..713 100 <- Minus
3R 17131491..17131859 240..608 100 <- Minus
3R 17131921..17132159 1..239 100   Minus
3R 17116377..17116611 2019..2253 100 <- Minus
3R 17116675..17117602 1091..2018 100 <- Minus
3R 17117658..17117884 864..1090 100 <- Minus

LD32109.pep Sequence

Translation from 166 to 2154

> LD32109.pep
MSTGLKCRNCGSNEIEEDNARGDRVCMNCGSVLEDSLIVSEVQFEEVGHG
AAAIGQFVSAESSGGATNYGYGKFQVGSGTESREVTIKKAKKDITLLCQQ
LQLSQHYADTALNFFKMALGRHLTRGRKSTHIYAACVYMTCRTEGTSHLL
IDISDVQQICSYELGRTYLKLSHALCINIPSLDPCLYIMRFANRLQLGAK
THEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTMLDV
IGVVKIHESTLRKRLSEFAETPSGGLTLEEFMTVDLEREQDPPSFKAARK
KDRERIKDMGEHELTELQKEIDAHLEKDLGKYSNSVYRQLTKGKGLSPLS
SPSTPNSSSEKDIELEESRQFIEQSNAEVIKELIAKNEDVKKSEPGGLVA
GIEGLRPDIEAICRVTQSDLEDVEKAKQPQEQELITDDLNDDELDQYVLT
EEESVAKLEMWKNLNAEYLQEQKERDERLAKEREEGKPERKKRKPRKKVI
GPSSTAGEAIEKMLQEKKISSKINYEILKTLTDGMGGLTDDSPTTSADTK
PSTLEELKHQPVIVEEGPVASKSRGNRAAYDLPGPSRKRPKLEVGLPVSK
AADVEQAETKPAVVVEADDLDEDADDPDVEPEAEPEATLQDMLNTGGDDD
EFGYGFDEEEEY*

LD32109.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16885-PA 665 GF16885-PA 1..665 1..662 2850 87.4 Plus
Dana\GF15790-PA 315 GF15790-PA 24..286 17..263 171 23.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16780-PA 668 GG16780-PA 1..668 1..662 3198 94.3 Plus
Dere\GG10133-PA 315 GG10133-PA 24..286 17..263 171 23.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17498-PA 667 GH17498-PA 1..667 1..662 2583 80 Plus
Dgri\GH13607-PA 315 GH13607-PA 24..286 17..263 178 23.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
Brf-PB 662 CG31256-PB 1..662 1..662 3392 100 Plus
Brf-PA 662 CG31256-PA 1..662 1..662 3392 100 Plus
TfIIB-PB 315 CG5193-PB 24..286 17..263 189 23.3 Plus
TfIIB-PA 315 CG5193-PA 24..286 17..263 189 23.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22827-PA 671 GI22827-PA 1..671 1..662 2628 80.5 Plus
Dmoj\GI20422-PA 315 GI20422-PA 24..286 17..263 171 23.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23944-PA 665 GL23944-PA 1..664 1..660 2797 86.3 Plus
Dper\GL19146-PA 315 GL19146-PA 24..286 17..263 171 23.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:20:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16127-PA 665 GA16127-PA 1..664 1..660 2781 85.7 Plus
Dpse\GA27746-PB 315 GA27746-PB 24..286 17..263 171 23.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15370-PA 356 GM15370-PA 1..347 1..347 1857 98.3 Plus
Dsec\GM18405-PA 315 GM18405-PA 24..286 17..263 170 23.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20238-PA 662 GD20238-PA 1..662 1..662 3466 98 Plus
Dsim\GD23702-PA 315 GD23702-PA 24..286 17..263 171 23.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22828-PA 666 GJ22828-PA 1..666 1..662 2554 79.9 Plus
Dvir\TfIIB-PA 315 GJ13764-PA 24..286 17..263 171 23.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:20:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11456-PA 691 GK11456-PA 1..691 1..662 2633 78 Plus
Dwil\GK14874-PA 315 GK14874-PA 24..286 17..263 171 23.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24172-PA 666 GE24172-PA 1..666 1..662 3155 95.3 Plus
Dyak\GE18945-PA 315 GE18945-PA 24..286 17..263 176 23.7 Plus

LD32109.hyp Sequence

Translation from 166 to 2154

> LD32109.hyp
MSTGLKCRNCGSNEIEEDNARGDRVCMNCGSVLEDSLIVSEVQFEEVGHG
AAAIGQFVSAESSGGATNYGYGKFQVGSGTESREVTIKKAKKDITLLCQQ
LQLSQHYADTALNFFKMALGRHLTRGRKSTHIYAACVYMTCRTEGTSHLL
IDISDVQQICSYELGRTYLKLSHALCINIPSLDPCLYIMRFANRLQLGAK
THEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTMLDV
IGVVKIHESTLRKRLSEFAETPSGGLTLEEFMTVDLEREQDPPSFKAARK
KDRERIKDMGEHELTELQKEIDAHLEKDLGKYSNSVYRQLTKGKGLSPLS
SPSTPNSSSEKDIELEESRQFIEQSNAEVIKELIAKNEDVKKSEPGGLVA
GIEGLRPDIEAICRVTQSDLEDVEKAKQPQEQELITDDLNDDELDQYVLT
EEESVAKLEMWKNLNAEYLQEQKERDERLAKEREEGKPERKKRKPRKKVI
GPSSTAGEAIEKMLQEKKISSKINYEILKTLTDGMGGLTDDSPTTSADTK
PSTLEELKHQPVIVEEGPVASKSRGNRAAYDLPGPSRKRPKLEVGLPVSK
AADVEQAETKPAVVVEADDLDEDADDPDVEPEAEPEATLQDMLNTGGDDD
EFGYGFDEEEEY*

LD32109.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:16:41
Subject Length Description Subject Range Query Range Score Percent Strand
Brf-PB 662 CG31256-PB 1..662 1..662 3392 100 Plus
Brf-PA 662 CG31256-PA 1..662 1..662 3392 100 Plus
TfIIB-PB 315 CG5193-PB 24..286 17..263 189 23.3 Plus
TfIIB-PA 315 CG5193-PA 24..286 17..263 189 23.3 Plus