BDGP Sequence Production Resources |
Search the DGRC for LD32109
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 321 |
Well: | 9 |
Vector: | pOT2 |
Associated Gene/Transcript | Brf-RA |
Protein status: | LD32109.pep: gold |
Preliminary Size: | 2254 |
Sequenced Size: | 2270 |
Gene | Date | Evidence |
---|---|---|
CG5419 | 2001-01-01 | Release 2 assignment |
CG4155 | 2001-01-01 | Release 2 assignment |
CG31256 | 2001-07-04 | Blastp of sequenced clone |
CG31256 | 2003-01-01 | Sim4 clustering to Release 3 |
Brf | 2008-04-29 | Release 5.5 accounting |
Brf | 2008-08-15 | Release 5.9 accounting |
Brf | 2008-12-18 | 5.12 accounting |
2270 bp (2270 high quality bases) assembled on 2005-08-22
GenBank Submission: AY051811
> LD32109.complete TTTTCCAAGCGTGTTGATTCAATTGGCAACAAATTGCAAATTGTTTAAAA AAGACTCGAAAATGGCTTTCAAATGACAGCAAACAAGTAGTTTAAACTGT CAAAACAACGGATAAAAACGAAGCGTTGCAGGTGGCAGTGTTTATTAAAG CAAAGAACAAACAATCATGTCTACGGGCCTAAAATGTCGCAATTGCGGAT CCAACGAGATCGAGGAAGACAATGCTCGCGGAGATCGAGTTTGCATGAAC TGCGGCTCGGTATTGGAGGATTCCCTCATTGTTTCCGAAGTGCAGTTCGA GGAAGTTGGCCATGGAGCAGCCGCAATTGGCCAGTTTGTGTCCGCCGAGT CGTCGGGCGGTGCCACCAACTATGGCTACGGCAAGTTTCAGGTGGGATCG GGCACCGAATCCCGCGAGGTGACCATCAAAAAGGCCAAGAAGGACATCAC ACTACTCTGCCAGCAGCTGCAGCTATCCCAGCACTATGCAGATACTGCTC TGAATTTCTTCAAGATGGCATTGGGTAGGCATCTGACCCGCGGTAGGAAG AGCACCCACATCTACGCCGCTTGCGTGTACATGACCTGCAGGACAGAGGG CACCTCCCATCTCCTCATCGACATCAGCGACGTACAGCAAATCTGTTCCT ATGAGCTTGGTCGTACCTACTTAAAGTTATCGCATGCCCTTTGTATCAAC ATACCTTCTCTGGACCCGTGTTTATACATCATGCGTTTTGCCAACCGACT GCAGTTGGGTGCCAAAACGCACGAGGTTTCGATGACGGCTCTGAGGATTG TCCAGCGCATGAAAAAGGACTGCATGCACTCGGGACGACGACCCACTGGC CTTTGTGGAGCAGCTTTGCTGATTGCGGCCCGGATGCACGATTTTAGTCG CACCATGCTGGACGTGATAGGTGTGGTCAAGATACACGAGTCAACGCTCC GAAAGCGTCTTTCGGAGTTTGCTGAAACGCCCTCGGGAGGGCTAACCCTG GAGGAGTTCATGACCGTTGACTTGGAGCGCGAACAGGATCCGCCTTCCTT TAAGGCAGCACGCAAAAAGGATCGTGAGAGAATCAAAGATATGGGCGAGC ATGAGCTAACAGAATTGCAAAAAGAAATTGATGCTCATCTGGAAAAAGAT CTAGGCAAGTACTCAAACTCCGTTTACCGTCAGCTGACTAAGGGTAAGGG ATTAAGTCCACTGAGCTCTCCAAGCACGCCCAATAGCAGCTCGGAAAAGG ATATTGAACTGGAGGAGTCCAGGCAGTTCATTGAACAATCTAATGCAGAG GTAATCAAGGAATTGATAGCCAAGAACGAGGACGTGAAGAAGTCAGAACC GGGTGGTTTGGTGGCTGGGATTGAAGGCCTGCGGCCGGATATCGAGGCTA TTTGCAGGGTGACCCAGAGCGATCTGGAGGACGTGGAAAAGGCTAAGCAG CCGCAAGAACAAGAACTCATCACCGACGATCTGAACGACGACGAACTGGA TCAGTACGTTCTGACAGAGGAGGAGTCGGTGGCAAAGTTGGAAATGTGGA AGAACCTCAATGCCGAGTATCTGCAAGAGCAGAAGGAACGCGACGAGCGG CTGGCCAAGGAACGCGAGGAGGGAAAGCCGGAGCGGAAGAAGCGAAAGCC ACGCAAGAAAGTCATTGGTCCCTCCTCCACCGCCGGCGAGGCCATTGAAA AGATGCTGCAGGAGAAGAAGATCTCCAGTAAGATCAACTACGAGATTCTC AAGACCCTGACTGACGGCATGGGCGGGCTGACGGATGACTCTCCCACAAC TAGTGCCGATACCAAACCGAGCACTCTGGAAGAGCTGAAGCATCAGCCGG TTATAGTGGAAGAAGGTCCTGTTGCTTCCAAGAGTAGGGGCAATAGGGCA GCCTACGATCTGCCCGGACCCAGTAGGAAACGTCCCAAACTTGAAGTGGG TCTGCCAGTCAGCAAAGCTGCTGATGTGGAGCAGGCGGAGACCAAGCCAG CAGTTGTGGTGGAAGCAGATGACCTGGACGAAGATGCTGATGATCCTGAC GTCGAACCCGAGGCAGAACCGGAGGCCACTCTTCAGGACATGCTCAACAC GGGCGGAGACGACGATGAGTTCGGCTACGGTTTTGACGAGGAGGAGGAAT ACTAGGCATAAGCTCGCATTTAGCGTTTAAAGCATTTTAGTATATATATA CACTCAGACTTTATAGTACCCGACCCACTCGTAATACAATTAAACTAAGC ATTAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 13200242..13201169 | 2018..1091 | 4610 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 13215056..13215426 | 608..238 | 1825 | 99.5 | Minus |
chr3R | 27901430 | chr3R | 13199944..13200181 | 2253..2016 | 1190 | 100 | Minus |
chr3R | 27901430 | chr3R | 13215486..13215724 | 239..1 | 1180 | 99.6 | Minus |
chr3R | 27901430 | chr3R | 13201225..13201453 | 1090..862 | 1145 | 100 | Minus |
chr3R | 27901430 | chr3R | 13201515..13201665 | 863..713 | 755 | 100 | Minus |
chr3R | 27901430 | chr3R | 13214892..13214996 | 713..609 | 525 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 17375844..17376771 | 2018..1091 | 4640 | 100 | Minus |
3R | 32079331 | 3R | 17390660..17391030 | 608..238 | 1855 | 100 | Minus |
3R | 32079331 | 3R | 17375544..17375783 | 2255..2016 | 1200 | 100 | Minus |
3R | 32079331 | 3R | 17391090..17391328 | 239..1 | 1195 | 100 | Minus |
3R | 32079331 | 3R | 17376827..17377055 | 1090..862 | 1145 | 100 | Minus |
3R | 32079331 | 3R | 17377117..17377267 | 863..713 | 755 | 100 | Minus |
3R | 32079331 | 3R | 17390496..17390600 | 713..609 | 525 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 17116675..17117602 | 2018..1091 | 4640 | 100 | Minus |
3R | 31820162 | 3R | 17131491..17131861 | 608..238 | 1855 | 100 | Minus |
3R | 31820162 | 3R | 17116375..17116614 | 2255..2016 | 1200 | 100 | Minus |
3R | 31820162 | 3R | 17131921..17132159 | 239..1 | 1195 | 100 | Minus |
3R | 31820162 | 3R | 17117658..17117886 | 1090..862 | 1145 | 100 | Minus |
3R | 31820162 | 3R | 17117948..17118098 | 863..713 | 755 | 100 | Minus |
3R | 31820162 | 3R | 17131327..17131431 | 713..609 | 525 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 13199944..13200178 | 2019..2253 | 100 | <- | Minus |
chr3R | 13200242..13201169 | 1091..2018 | 99 | <- | Minus |
chr3R | 13201225..13201451 | 864..1090 | 100 | <- | Minus |
chr3R | 13201515..13201664 | 714..863 | 100 | <- | Minus |
chr3R | 13214892..13214996 | 609..713 | 100 | <- | Minus |
chr3R | 13215056..13215424 | 240..608 | 99 | <- | Minus |
chr3R | 13215486..13215724 | 1..239 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Brf-RA | 1..1989 | 167..2155 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Brf-RB | 1..1989 | 167..2155 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Brf-RA | 1..1989 | 167..2155 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Brf-RA | 1..1989 | 167..2155 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Brf-RA | 1..1989 | 167..2155 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Brf-RA | 5..2257 | 1..2253 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Brf-RA | 5..2257 | 1..2253 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Brf-RA | 10..2262 | 1..2253 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Brf-RA | 5..2257 | 1..2253 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Brf-RA | 10..2262 | 1..2253 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17375546..17375780 | 2019..2253 | 100 | <- | Minus |
3R | 17375844..17376771 | 1091..2018 | 100 | <- | Minus |
3R | 17376827..17377053 | 864..1090 | 100 | <- | Minus |
3R | 17377117..17377266 | 714..863 | 100 | <- | Minus |
3R | 17390496..17390600 | 609..713 | 100 | <- | Minus |
3R | 17390660..17391028 | 240..608 | 100 | <- | Minus |
3R | 17391090..17391328 | 1..239 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17375546..17375780 | 2019..2253 | 100 | <- | Minus |
3R | 17375844..17376771 | 1091..2018 | 100 | <- | Minus |
3R | 17376827..17377053 | 864..1090 | 100 | <- | Minus |
3R | 17377117..17377266 | 714..863 | 100 | <- | Minus |
3R | 17390496..17390600 | 609..713 | 100 | <- | Minus |
3R | 17390660..17391028 | 240..608 | 100 | <- | Minus |
3R | 17391090..17391328 | 1..239 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17375546..17375780 | 2019..2253 | 100 | <- | Minus |
3R | 17375844..17376771 | 1091..2018 | 100 | <- | Minus |
3R | 17376827..17377053 | 864..1090 | 100 | <- | Minus |
3R | 17377117..17377266 | 714..863 | 100 | <- | Minus |
3R | 17390496..17390600 | 609..713 | 100 | <- | Minus |
3R | 17390660..17391028 | 240..608 | 100 | <- | Minus |
3R | 17391090..17391328 | 1..239 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 13201268..13201502 | 2019..2253 | 100 | <- | Minus |
arm_3R | 13201566..13202493 | 1091..2018 | 100 | <- | Minus |
arm_3R | 13202549..13202775 | 864..1090 | 100 | <- | Minus |
arm_3R | 13202839..13202988 | 714..863 | 100 | <- | Minus |
arm_3R | 13216218..13216322 | 609..713 | 100 | <- | Minus |
arm_3R | 13216382..13216750 | 240..608 | 100 | <- | Minus |
arm_3R | 13216812..13217050 | 1..239 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17117948..17118097 | 714..863 | 100 | <- | Minus |
3R | 17131327..17131431 | 609..713 | 100 | <- | Minus |
3R | 17131491..17131859 | 240..608 | 100 | <- | Minus |
3R | 17131921..17132159 | 1..239 | 100 | Minus | |
3R | 17116377..17116611 | 2019..2253 | 100 | <- | Minus |
3R | 17116675..17117602 | 1091..2018 | 100 | <- | Minus |
3R | 17117658..17117884 | 864..1090 | 100 | <- | Minus |
Translation from 166 to 2154
> LD32109.pep MSTGLKCRNCGSNEIEEDNARGDRVCMNCGSVLEDSLIVSEVQFEEVGHG AAAIGQFVSAESSGGATNYGYGKFQVGSGTESREVTIKKAKKDITLLCQQ LQLSQHYADTALNFFKMALGRHLTRGRKSTHIYAACVYMTCRTEGTSHLL IDISDVQQICSYELGRTYLKLSHALCINIPSLDPCLYIMRFANRLQLGAK THEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTMLDV IGVVKIHESTLRKRLSEFAETPSGGLTLEEFMTVDLEREQDPPSFKAARK KDRERIKDMGEHELTELQKEIDAHLEKDLGKYSNSVYRQLTKGKGLSPLS SPSTPNSSSEKDIELEESRQFIEQSNAEVIKELIAKNEDVKKSEPGGLVA GIEGLRPDIEAICRVTQSDLEDVEKAKQPQEQELITDDLNDDELDQYVLT EEESVAKLEMWKNLNAEYLQEQKERDERLAKEREEGKPERKKRKPRKKVI GPSSTAGEAIEKMLQEKKISSKINYEILKTLTDGMGGLTDDSPTTSADTK PSTLEELKHQPVIVEEGPVASKSRGNRAAYDLPGPSRKRPKLEVGLPVSK AADVEQAETKPAVVVEADDLDEDADDPDVEPEAEPEATLQDMLNTGGDDD EFGYGFDEEEEY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16885-PA | 665 | GF16885-PA | 1..665 | 1..662 | 2850 | 87.4 | Plus |
Dana\GF15790-PA | 315 | GF15790-PA | 24..286 | 17..263 | 171 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16780-PA | 668 | GG16780-PA | 1..668 | 1..662 | 3198 | 94.3 | Plus |
Dere\GG10133-PA | 315 | GG10133-PA | 24..286 | 17..263 | 171 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17498-PA | 667 | GH17498-PA | 1..667 | 1..662 | 2583 | 80 | Plus |
Dgri\GH13607-PA | 315 | GH13607-PA | 24..286 | 17..263 | 178 | 23.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Brf-PB | 662 | CG31256-PB | 1..662 | 1..662 | 3392 | 100 | Plus |
Brf-PA | 662 | CG31256-PA | 1..662 | 1..662 | 3392 | 100 | Plus |
TfIIB-PB | 315 | CG5193-PB | 24..286 | 17..263 | 189 | 23.3 | Plus |
TfIIB-PA | 315 | CG5193-PA | 24..286 | 17..263 | 189 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22827-PA | 671 | GI22827-PA | 1..671 | 1..662 | 2628 | 80.5 | Plus |
Dmoj\GI20422-PA | 315 | GI20422-PA | 24..286 | 17..263 | 171 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23944-PA | 665 | GL23944-PA | 1..664 | 1..660 | 2797 | 86.3 | Plus |
Dper\GL19146-PA | 315 | GL19146-PA | 24..286 | 17..263 | 171 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16127-PA | 665 | GA16127-PA | 1..664 | 1..660 | 2781 | 85.7 | Plus |
Dpse\GA27746-PB | 315 | GA27746-PB | 24..286 | 17..263 | 171 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15370-PA | 356 | GM15370-PA | 1..347 | 1..347 | 1857 | 98.3 | Plus |
Dsec\GM18405-PA | 315 | GM18405-PA | 24..286 | 17..263 | 170 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20238-PA | 662 | GD20238-PA | 1..662 | 1..662 | 3466 | 98 | Plus |
Dsim\GD23702-PA | 315 | GD23702-PA | 24..286 | 17..263 | 171 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22828-PA | 666 | GJ22828-PA | 1..666 | 1..662 | 2554 | 79.9 | Plus |
Dvir\TfIIB-PA | 315 | GJ13764-PA | 24..286 | 17..263 | 171 | 23.3 | Plus |
Translation from 166 to 2154
> LD32109.hyp MSTGLKCRNCGSNEIEEDNARGDRVCMNCGSVLEDSLIVSEVQFEEVGHG AAAIGQFVSAESSGGATNYGYGKFQVGSGTESREVTIKKAKKDITLLCQQ LQLSQHYADTALNFFKMALGRHLTRGRKSTHIYAACVYMTCRTEGTSHLL IDISDVQQICSYELGRTYLKLSHALCINIPSLDPCLYIMRFANRLQLGAK THEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTMLDV IGVVKIHESTLRKRLSEFAETPSGGLTLEEFMTVDLEREQDPPSFKAARK KDRERIKDMGEHELTELQKEIDAHLEKDLGKYSNSVYRQLTKGKGLSPLS SPSTPNSSSEKDIELEESRQFIEQSNAEVIKELIAKNEDVKKSEPGGLVA GIEGLRPDIEAICRVTQSDLEDVEKAKQPQEQELITDDLNDDELDQYVLT EEESVAKLEMWKNLNAEYLQEQKERDERLAKEREEGKPERKKRKPRKKVI GPSSTAGEAIEKMLQEKKISSKINYEILKTLTDGMGGLTDDSPTTSADTK PSTLEELKHQPVIVEEGPVASKSRGNRAAYDLPGPSRKRPKLEVGLPVSK AADVEQAETKPAVVVEADDLDEDADDPDVEPEAEPEATLQDMLNTGGDDD EFGYGFDEEEEY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Brf-PB | 662 | CG31256-PB | 1..662 | 1..662 | 3392 | 100 | Plus |
Brf-PA | 662 | CG31256-PA | 1..662 | 1..662 | 3392 | 100 | Plus |
TfIIB-PB | 315 | CG5193-PB | 24..286 | 17..263 | 189 | 23.3 | Plus |
TfIIB-PA | 315 | CG5193-PA | 24..286 | 17..263 | 189 | 23.3 | Plus |