Clone LD32155 Report

Search the DGRC for LD32155

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:321
Well:55
Vector:pOT2
Associated Gene/TranscriptDok-RA
Protein status:LD32155.pep: gold
Preliminary Size:3276
Sequenced Size:3515

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2079 2001-10-10 Blastp of sequenced clone
CG2079 2003-01-01 Sim4 clustering to Release 3
Dok 2008-04-29 Release 5.5 accounting
Dok 2008-08-15 Release 5.9 accounting
Dok 2008-12-18 5.12 accounting

Clone Sequence Records

LD32155.complete Sequence

3515 bp (3515 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061397

> LD32155.complete
TGCAACCGTGCAGCGCATAAATAAATAAAGTCGACTTGCCTCTGTGCTCG
CTTTTTGGTGATTTTTTTTTGTGCTGCGGCTGCGCTTTTCGAAATTCGAA
TCTCCGTATTCGCTGTGCGATATGATGTGATGTTTACTATGAAGTGATCA
ACTAAATGCGACCGCGAAGCTATCGTAAAGCACAGAAAAACGGATGAATT
GAAGGAAAACTCCAGAAATCGCATAGCCCAACTCCAGCAACAACAACAAC
AACAACAATTCGGAATCGGAGGCGCATTGTGTGAGCTAGATCGGCGAAGG
AGAGGGAAAGAGAGCAGGAGACGAAGGAGAGTGGGAAGAAGGAGAGGAGA
GGTGGAGGAGTGGTGCACAGAATGGATGTTGAAATACCTGTTTTGGCTGG
ATATCTTAATGTGCCGACCCAAACTGGATTTTCGCTAAATCGCATCTCGA
AAAAGAAAGCATGCAGTCGCTACTGTTTGCTATTCAAGGCCAGTCGGCAT
GGGATTGCCCGCCTGGAGATGTGCGAAAGCAAGGAGGACCGGAACCCCAA
AATCTTCACCCTCGAAAACTGTGTGAAGATCACTCAGGAGCCGCCTCCCG
AACGCCTCATTCACATTGTCAAGCGGCAGGCTACCCTAACACTGAGCACA
AGTAGCGAGGAGGAGCTCAAGGATTGGATCACCGCCCTGCAAACGGTGGC
CTTCTGTGACACCTCACCATCGGGGGGAATCGGGGCCATCGAGGAGGACA
ACGACCTCTACTGCAGCTCCTTTGATGGCTTGTTCATTATCACGTTGATT
CCATCCGAGGCCTCCATTCGTTGCTGCATTGAACCTAAGACATATATGCT
CCAAATGACGCCCACTGAACTTCAGTTGAAATCGGAGGATTTGGGCGCCA
CAATCGCCATGTGGCCATATCGTTTCATTAGGAAGTACGGCTATCGCGAT
GGCAAGTTCACCTTTGAGGCGGGCAGAAAATGCACCACCGGCGAAGGCGT
TTTCACCCTGGATCACACCAATCCACAGGAGGTATTCCGCTGCATGTCCG
CCAAGATGAAGTCGATGAAGAAACTGATTAGCGGCGATAGTCTGAGCACC
TTGGAGTGCGGTGAGAATCAGTTTAGTGCGGCAGCTGGCATGGAGCCCGG
TTCGCGAAGCCCACTGCCACCATCACCGTCGAGTAATCCCCACGGTGGCG
AGTTCGAGATCAACTCAACGCAAAGCTGCATATCCCTGAGGGGCTTCATT
AGCTCTAACGATTCTCTTAATAACTTCTCGGCGGGTGGAGGTGGAGCAAG
TGGCGCCACAGCAACGGGTGGAGGCGTTTTAGGAAGTACCGGAGGAATCA
CGCTATCCGTGCCCGCAAATAGCAATAGCAACAGCAGCAGCAGCAAACAC
ATTCCCAACAAACCGCCACGCAAAAGCCCGACAACCCATTGTGATAAATA
CAGGAATATTGTGAAATATGAACCTGTGGCCATAACTACGATATCTTCGC
CATCCGCCAATTCCGATGTGAACAGTTCAGTGATACTGAAACCCCTGGAA
GGCGAATCGATATCCCTGCCGGAAACAGCAGCCGATTTACCGCCCGACTT
GCCGCTGCGAAATGAGAGCGCCTCGAAAGCACCGCCTCCGGAGCGGGATT
ACGAGTGCATCGAAAATATCACAGAGGCGTGGCGCACAAGGGGCGTGGGC
GATGTTAGGCACAGTGAACGTATGCCCATACTCTGCGATACCTCAGAATT
TGTACGCCAGCGATCAGTATCGAAATCCACCTGTGGCAGCCAAAATACAC
CCAAGATCATAGACATCGATATCGGTGAGGGTTGCACTAGCGCCACATCC
ATTAGTGAATCGAATTACGATCGTTTAGACTTTCTATCGCCGAACAATAA
GACATCGAGTGGCTATAAGACCATTGTGAATGTCACACCCGGTAATCGCA
TACGATGCAGTCCACCGCCACCCAATGAATACGAATTGATCGCTAGTCCC
GATACGGAAAGCTTCCGTAAAGCCGATGACAGTCATCGCGGTTACGGGGT
GCTGCGAAAGGCTAGCACCACTACGAACAATAATAATCTAGGAATCTCCA
ATAGCAATATCAGCGGCGGTAGTAGCACCATCACAACTGCAACGGCCAAC
AAAGGCGGCAATCTCGAGGCGGCAGCCATCGATCATCGCAGCTATAATGG
CCTCAACTACACAATGGTCAGCAAACCGAAGCGAGTGTAAAATATTTAAG
GATTTCAGATCCGATAGCAAGGATCCAGAGATCCTGGCATCGAACTGGGT
GCAGTGGGGTTTTGGGGTGGATCGGGAGGAGATAGTCCTAGTTTTTATTT
GTCCCAGAACTGTTGCTGTTTTCAATTTAATTCAACACAACTTGTTGACA
TGTTAATTTGGATTTTCCCAGTAGTCAAATTCATGACTATTTCGTTATTG
GACGACGCCAGATGAATAAGCTTGTGTGCTTTTCGCGATACATTTTAAGT
GTTGCGATAACAAATGTAAATGTATGTTCAAAAAAATTTAAAAAACAAAA
TTGAAAACAGTAACGTGCCAGTAACTTTTTACATAATTTCATACATTTTG
AGTATAAGTGAAAAAGAAGAGACTGCCGAGTGCCTTACAGTTCTACAAAA
AGAAAGAAATTCCTGGCTGGAAATCGAGGGAAGGAAGTGCGTCGAATCTC
TAAATCCCAGAATTTGTCCTTCCCTTTGCCAAGCCAAAAACAAATACCAT
TCGAATCGTTCAATTTTTTTTTTTTTTGTAATTGTTTTTCGTTAATTATG
TTAAATTCGTAATCTGTGATTGTATTGTTAATTGTGAAACTGTTACATTT
TTAGCAAGCACTGCCCGCCACTTGATGATCGCACTCGAAAAATTCCCCCG
GCTCTTACTTAAAATGTAGTGTTAAATTAAAGCAAGAGAAAAATGAAACT
CAATCGAATCATGGACGTAACGAAAATTTACAAAATGTGTATGCGATTTA
TGCTAAATATATGTGTTTTTGTATATTTAAAGGAACTAGATTTTAAATAC
ACTGCAATTGTACTTGTTTCCGTTTATCCGTCCGTCTTCTCAAGGTTTTG
ATGCCATATAAATCGGTTATTCGAATTGTTATTCCTATACGTTTTTGTAT
GATAGATCATATAGCTGCCATAGGAACAAACGGTGTAATGCCATTATCTC
AAAAATCACCCAAAATAGTTGACTCTTATTTTTTTTTTTTTTGCTCAATC
TTAGACTGTAAATATACAATAGGTTTCTTAAGTGTTGTTTTCGATTGCAC
CTCCTCTCAATAACCCAAATAAGAAACCCGCCCCATCGTTACCCCATGCA
CGTTCGAGTTCTCAAGCCAGGATTGTTGTAAACGACAGTTTTGAGTATTA
TGCAAAGGTCACAAAAAAAAAAAAAAAAAATTTATATAAATTAAAACGAA
CAAACGAAGGCGAACACAAATAAGAAAAATACCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA

LD32155.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dok-RA 3734 Dok-RA 94..3586 1..3493 17450 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 7218028..7220737 774..3483 13550 100 Plus
chrX 22417052 chrX 7216149..7216603 1..455 2275 100 Plus
chrX 22417052 chrX 7217465..7217785 454..774 1605 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:26:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7326097..7328816 774..3493 13585 100 Plus
X 23542271 X 7324218..7324672 1..455 2275 100 Plus
X 23542271 X 7325534..7325854 454..774 1605 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 7334195..7336914 774..3493 13585 99.9 Plus
X 23527363 X 7332316..7332770 1..455 2275 100 Plus
X 23527363 X 7333632..7333952 454..774 1605 100 Plus
Blast to na_te.dros performed 2019-03-16 11:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..6890 1305..1427 141 61.2 Plus
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 10378..10452 3455..3380 134 65.8 Minus
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 1860..1934 3455..3380 134 65.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2486..2622 1369..1504 133 58.3 Plus
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 728..818 3077..2986 132 68.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2620..2863 1371..1618 129 55.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1543..1605 1371..1434 128 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2332..2400 1368..1435 125 70 Plus
Tirant 8526 Tirant TIRANT 8526bp 912..946 1720..1754 121 82.9 Plus
Tirant 8526 Tirant TIRANT 8526bp 1014..1048 1720..1754 121 82.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2320..2433 1295..1412 120 61.7 Plus
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 570..626 3425..3480 120 70.2 Plus
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 9087..9143 3425..3480 120 70.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2257..2403 1286..1427 119 58.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2356..2424 1371..1435 118 69.6 Plus

LD32155.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:48:21 Download gff for LD32155.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 7216149..7216603 1..455 100 -> Plus
chrX 7217467..7217784 456..773 100 -> Plus
chrX 7218028..7220737 774..3483 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:13:42 Download gff for LD32155.complete
Subject Subject Range Query Range Percent Splice Strand
Dok-RA 1..1869 372..2240 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:35:56 Download gff for LD32155.complete
Subject Subject Range Query Range Percent Splice Strand
Dok-RA 1..1869 372..2240 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:41:52 Download gff for LD32155.complete
Subject Subject Range Query Range Percent Splice Strand
Dok-RA 1..1869 372..2240 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:04:51 Download gff for LD32155.complete
Subject Subject Range Query Range Percent Splice Strand
Dok-RA 1..1869 372..2240 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:26:48 Download gff for LD32155.complete
Subject Subject Range Query Range Percent Splice Strand
Dok-RA 1..1869 372..2240 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:16:03 Download gff for LD32155.complete
Subject Subject Range Query Range Percent Splice Strand
Dok-RA 1..3483 1..3483 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:35:56 Download gff for LD32155.complete
Subject Subject Range Query Range Percent Splice Strand
Dok-RA 1..3483 1..3483 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:41:52 Download gff for LD32155.complete
Subject Subject Range Query Range Percent Splice Strand
Dok-RA 5..3487 1..3483 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:04:51 Download gff for LD32155.complete
Subject Subject Range Query Range Percent Splice Strand
Dok-RA 1..3483 1..3483 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:26:48 Download gff for LD32155.complete
Subject Subject Range Query Range Percent Splice Strand
Dok-RA 5..3487 1..3483 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:48:21 Download gff for LD32155.complete
Subject Subject Range Query Range Percent Splice Strand
X 7324218..7324672 1..455 100 -> Plus
X 7325536..7325853 456..773 100 -> Plus
X 7326097..7328806 774..3483 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:48:21 Download gff for LD32155.complete
Subject Subject Range Query Range Percent Splice Strand
X 7324218..7324672 1..455 100 -> Plus
X 7325536..7325853 456..773 100 -> Plus
X 7326097..7328806 774..3483 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:48:21 Download gff for LD32155.complete
Subject Subject Range Query Range Percent Splice Strand
X 7324218..7324672 1..455 100 -> Plus
X 7325536..7325853 456..773 100 -> Plus
X 7326097..7328806 774..3483 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:41:52 Download gff for LD32155.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7218251..7218705 1..455 100 -> Plus
arm_X 7219569..7219886 456..773 100 -> Plus
arm_X 7220130..7222839 774..3483 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:40:40 Download gff for LD32155.complete
Subject Subject Range Query Range Percent Splice Strand
X 7332316..7332770 1..455 100 -> Plus
X 7333634..7333951 456..773 100 -> Plus
X 7334195..7336904 774..3483 100   Plus

LD32155.pep Sequence

Translation from 371 to 2239

> LD32155.pep
MDVEIPVLAGYLNVPTQTGFSLNRISKKKACSRYCLLFKASRHGIARLEM
CESKEDRNPKIFTLENCVKITQEPPPERLIHIVKRQATLTLSTSSEEELK
DWITALQTVAFCDTSPSGGIGAIEEDNDLYCSSFDGLFIITLIPSEASIR
CCIEPKTYMLQMTPTELQLKSEDLGATIAMWPYRFIRKYGYRDGKFTFEA
GRKCTTGEGVFTLDHTNPQEVFRCMSAKMKSMKKLISGDSLSTLECGENQ
FSAAAGMEPGSRSPLPPSPSSNPHGGEFEINSTQSCISLRGFISSNDSLN
NFSAGGGGASGATATGGGVLGSTGGITLSVPANSNSNSSSSKHIPNKPPR
KSPTTHCDKYRNIVKYEPVAITTISSPSANSDVNSSVILKPLEGESISLP
ETAADLPPDLPLRNESASKAPPPERDYECIENITEAWRTRGVGDVRHSER
MPILCDTSEFVRQRSVSKSTCGSQNTPKIIDIDIGEGCTSATSISESNYD
RLDFLSPNNKTSSGYKTIVNVTPGNRIRCSPPPPNEYELIASPDTESFRK
ADDSHRGYGVLRKASTTTNNNNLGISNSNISGGSSTITTATANKGGNLEA
AAIDHRSYNGLNYTMVSKPKRV*

LD32155.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21174-PA 619 GF21174-PA 1..619 1..622 2278 77.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19639-PA 627 GG19639-PA 1..627 1..622 3157 96.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:33:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24263-PA 677 GH24263-PA 1..677 1..622 2095 66.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dok-PA 622 CG2079-PA 1..622 1..622 3252 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:33:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15945-PA 621 GI15945-PA 1..621 1..622 2215 73.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14696-PA 618 GL14696-PA 1..618 1..622 1895 67.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15227-PA 656 GA15227-PA 1..656 1..622 2216 75 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17514-PA 624 GM17514-PA 1..624 1..622 3230 97.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:33:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16840-PA 624 GD16840-PA 1..624 1..622 3237 97.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14851-PA 684 GJ14851-PA 1..684 1..622 2115 67.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16143-PA 663 GK16143-PA 1..574 1..563 1925 68.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15709-PA 637 GE15709-PA 1..637 1..622 3125 93.9 Plus

LD32155.hyp Sequence

Translation from 371 to 2239

> LD32155.hyp
MDVEIPVLAGYLNVPTQTGFSLNRISKKKACSRYCLLFKASRHGIARLEM
CESKEDRNPKIFTLENCVKITQEPPPERLIHIVKRQATLTLSTSSEEELK
DWITALQTVAFCDTSPSGGIGAIEEDNDLYCSSFDGLFIITLIPSEASIR
CCIEPKTYMLQMTPTELQLKSEDLGATIAMWPYRFIRKYGYRDGKFTFEA
GRKCTTGEGVFTLDHTNPQEVFRCMSAKMKSMKKLISGDSLSTLECGENQ
FSAAAGMEPGSRSPLPPSPSSNPHGGEFEINSTQSCISLRGFISSNDSLN
NFSAGGGGASGATATGGGVLGSTGGITLSVPANSNSNSSSSKHIPNKPPR
KSPTTHCDKYRNIVKYEPVAITTISSPSANSDVNSSVILKPLEGESISLP
ETAADLPPDLPLRNESASKAPPPERDYECIENITEAWRTRGVGDVRHSER
MPILCDTSEFVRQRSVSKSTCGSQNTPKIIDIDIGEGCTSATSISESNYD
RLDFLSPNNKTSSGYKTIVNVTPGNRIRCSPPPPNEYELIASPDTESFRK
ADDSHRGYGVLRKASTTTNNNNLGISNSNISGGSSTITTATANKGGNLEA
AAIDHRSYNGLNYTMVSKPKRV*

LD32155.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dok-PA 622 CG2079-PA 1..622 1..622 3252 100 Plus