Clone LD32227 Report

Search the DGRC for LD32227

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:322
Well:27
Vector:pOT2
Associated Gene/Transcriptmeigo-RA
Protein status:LD32227.pep: gold
Sequenced Size:1469

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5802 2008-04-29 Release 5.5 accounting
CG5802 2008-04-29 Picked prior to 5.5
CG5802 2008-08-15 Release 5.9 accounting
CG5802 2008-12-18 5.12 accounting

Clone Sequence Records

LD32227.complete Sequence

1469 bp assembled on 2007-11-15

GenBank Submission: BT031262

> LD32227.complete
GCACTGCAGCCGCGACTCCAGAGAATGCCAACTGTTTAGGATCGTGCATT
AAGTCCGACTTAACCAATTCGCAAGTCACACGCTTTAAAAACCGTCATCT
GCCCGCCATGAATCTGCCGGAACGCAGCCGTTTTGTGATCTACGCCGTCG
GTATCTTCGTATGCTACTTCTTGTACGGAATTGTCCAGGAGAAGTTGACG
CGGGGCCGCTACGGCGAGGAGGTACAGACAGATGGATCCGTGGGAGAGCG
CTTCACTTACGCCTTGGCCCTTGTTTGGGTGCAGTGCCTCTGCAACTATG
TGTTTGCCAAGGTGCTGCTGACCATTAGGCCGCAAAAGGAGGACACCACC
AACGCGGGCTCCTACGTGGCCTGTTCGCTGACCTATCTTCTGGCCATGGT
CTCCACCAATATGGCCATGCGCTGGGTTCCCTATCCCACTGCTGTGGTGG
GTAAATCCGCCAAGCCCATCCCCGTCATGATCCTGGGCGTGCTGATTGGT
CGCAAATCCTACAGCTGGACGCGCTATGCTTGCGTATTGACCATTGTCCT
GGGAGTTATTCTCTTTATGTACAAGGAGGGCAAGGTGTCCAATTTGCCGG
CTGAGACCACGCTTCTCGGCGAGGTGCTGCTCTTCCTCAGTTTGTCAATG
GACGGATTGACTGGAGCCGTTCAGGAACGCATCCGAGCGGCCAGCGCGCC
TTCCGGTCAGCAGATGATGAGGGCCATGAACTTCTGGAGCACCCTGATGC
TTGGCGTTGCCATGGTATTTACAGGTGAGGCCAAGGAATTCATGTACTTC
ACCATCCGACATCCCGAGGCGTGGACCCATTTATCGCTGATAGCTGTGTG
CGGCGTGCTCGGTCAGTTCTTCATCTTTCTGATGGTGGCCAGCTTTGGAC
CTCTGGCCTGCTCCGTGGTTACGACGACGCGAAAGTTCTTTACCGTCCTG
TGCTCCGTTCTGCTGTTCGGAAACGTCCTGATTGCCCGCCAGTGGCTTGG
AGCTGTCCTGGTGTTCGCCGCACTCTTTGTGGACATGCTGTACGGCAAGA
AGGCGCCACTGGCTACGGCCAAAAAGCCGCCAGTCGAGGGAAAGCTATCC
GAGGAAAAGAAACTGAATTCGTAGAATTTGATAGATGATTGCATAGCCCT
ATGTACTGTACATACACAAATTAAGAAGACAATGCTTCCGGCTCGAGCGG
CTGCAGCGCCAAAGTTTCCCCATTTCCTAGAACTGCTTATCGTACAAAGG
ATTCTAGCTATAGCGAACAGCATTCGATACTTGATCTGCAACCCATAGAC
CGTCGTTTAAGTTAATTAAATTATTGATATCTATTAGAAAAGGAACAAAT
ATTGTGCAAAAGTTTACACCAGACCTGCGGGTCTCTAACATACAGGATCA
TTCAATCATTTAATGCTACAATTTATAATTAAAACGTGCTCTTTTATTAA
AAAAAAAAAAAAAAAAAAA

LD32227.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5802-RB 1953 CG5802-RB 419..1870 1..1450 7205 99.8 Plus
CG5802-RA 1710 CG5802-RA 176..1627 1..1450 7205 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 16963544..16964222 772..1448 3255 99 Plus
chr3R 27901430 chr3R 16962974..16963441 312..779 2325 99.8 Plus
chr3R 27901430 chr3R 16962611..16962922 1..312 1560 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:26:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21139687..21140367 772..1450 3340 99.7 Plus
3R 32079331 3R 21139117..21139584 312..779 2340 100 Plus
3R 32079331 3R 21138754..21139065 1..312 1560 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 20880518..20881198 772..1450 3350 99.7 Plus
3R 31820162 3R 20879948..20880415 312..779 2340 100 Plus
3R 31820162 3R 20879585..20879896 1..312 1560 100 Plus
Blast to na_te.dros performed on 2019-03-15 11:26:42 has no hits.

LD32227.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:27:47 Download gff for LD32227.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 16962611..16962922 1..312 100 -> Plus
chr3R 16962975..16963436 313..774 99 -> Plus
chr3R 16963547..16964222 775..1448 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:13:45 Download gff for LD32227.complete
Subject Subject Range Query Range Percent Splice Strand
CG5802-RB 1..1017 108..1124 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:04:43 Download gff for LD32227.complete
Subject Subject Range Query Range Percent Splice Strand
CG5802-RB 1..1017 108..1124 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:29:12 Download gff for LD32227.complete
Subject Subject Range Query Range Percent Splice Strand
meigo-RA 1..1017 108..1124 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:51:02 Download gff for LD32227.complete
Subject Subject Range Query Range Percent Splice Strand
CG5802-RB 1..1017 108..1124 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:34:19 Download gff for LD32227.complete
Subject Subject Range Query Range Percent Splice Strand
meigo-RA 1..1017 108..1124 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:56:58 Download gff for LD32227.complete
Subject Subject Range Query Range Percent Splice Strand
CG5802-RB 419..1868 1..1448 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:04:43 Download gff for LD32227.complete
Subject Subject Range Query Range Percent Splice Strand
CG5802-RB 419..1868 1..1448 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:29:12 Download gff for LD32227.complete
Subject Subject Range Query Range Percent Splice Strand
meigo-RA 63..1512 1..1448 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:51:02 Download gff for LD32227.complete
Subject Subject Range Query Range Percent Splice Strand
CG5802-RB 419..1868 1..1448 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:34:19 Download gff for LD32227.complete
Subject Subject Range Query Range Percent Splice Strand
meigo-RA 63..1512 1..1448 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:27:47 Download gff for LD32227.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21138754..21139065 1..312 100 -> Plus
3R 21139118..21139579 313..774 100 -> Plus
3R 21139690..21140365 775..1448 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:27:47 Download gff for LD32227.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21138754..21139065 1..312 100 -> Plus
3R 21139118..21139579 313..774 100 -> Plus
3R 21139690..21140365 775..1448 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:27:47 Download gff for LD32227.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21138754..21139065 1..312 100 -> Plus
3R 21139118..21139579 313..774 100 -> Plus
3R 21139690..21140365 775..1448 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:29:12 Download gff for LD32227.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16964476..16964787 1..312 100 -> Plus
arm_3R 16964840..16965301 313..774 100 -> Plus
arm_3R 16965412..16966087 775..1448 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:56:49 Download gff for LD32227.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20879585..20879896 1..312 100 -> Plus
3R 20879949..20880410 313..774 100 -> Plus
3R 20880521..20881196 775..1448 99   Plus

LD32227.hyp Sequence

Translation from 2 to 1123

> LD32227.hyp
TAAATPENANCLGSCIKSDLTNSQVTRFKNRHLPAMNLPERSRFVIYAVG
IFVCYFLYGIVQEKLTRGRYGEEVQTDGSVGERFTYALALVWVQCLCNYV
FAKVLLTIRPQKEDTTNAGSYVACSLTYLLAMVSTNMAMRWVPYPTAVVG
KSAKPIPVMILGVLIGRKSYSWTRYACVLTIVLGVILFMYKEGKVSNLPA
ETTLLGEVLLFLSLSMDGLTGAVQERIRAASAPSGQQMMRAMNFWSTLML
GVAMVFTGEAKEFMYFTIRHPEAWTHLSLIAVCGVLGQFFIFLMVASFGP
LACSVVTTTRKFFTVLCSVLLFGNVLIARQWLGAVLVFAALFVDMLYGKK
APLATAKKPPVEGKLSEEKKLNS*

LD32227.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
meigo-PB 338 CG5802-PB 1..338 36..373 1732 100 Plus
meigo-PA 338 CG5802-PA 1..338 36..373 1732 100 Plus
sll-PB 465 CG7623-PB 151..441 50..343 295 25.8 Plus
sll-PA 465 CG7623-PA 151..441 50..343 295 25.8 Plus
Papst2-PA 396 CG7853-PA 60..371 42..356 210 25.6 Plus

LD32227.pep Sequence

Translation from 107 to 1123

> LD32227.pep
MNLPERSRFVIYAVGIFVCYFLYGIVQEKLTRGRYGEEVQTDGSVGERFT
YALALVWVQCLCNYVFAKVLLTIRPQKEDTTNAGSYVACSLTYLLAMVST
NMAMRWVPYPTAVVGKSAKPIPVMILGVLIGRKSYSWTRYACVLTIVLGV
ILFMYKEGKVSNLPAETTLLGEVLLFLSLSMDGLTGAVQERIRAASAPSG
QQMMRAMNFWSTLMLGVAMVFTGEAKEFMYFTIRHPEAWTHLSLIAVCGV
LGQFFIFLMVASFGPLACSVVTTTRKFFTVLCSVLLFGNVLIARQWLGAV
LVFAALFVDMLYGKKAPLATAKKPPVEGKLSEEKKLNS*

LD32227.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23157-PA 343 GF23157-PA 1..336 1..335 1655 92.6 Plus
Dana\GF17812-PA 459 GF17812-PA 145..455 15..324 286 25.1 Plus
Dana\GF10102-PA 389 GF10102-PA 52..364 7..322 182 26.2 Plus
Dana\GF20373-PA 353 GF20373-PA 29..349 39..324 153 24.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24421-PA 339 GG24421-PA 1..339 1..338 1730 97.3 Plus
Dere\GG22340-PA 464 GG22340-PA 150..440 15..308 277 25.8 Plus
Dere\GG13603-PA 386 GG13603-PA 50..362 7..322 176 25.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18184-PA 341 GH18184-PA 1..334 1..334 1387 78.4 Plus
Dgri\GH18093-PA 463 GH18093-PA 149..461 15..326 290 26.2 Plus
Dgri\GH16468-PA 409 GH16468-PA 73..381 7..318 180 25.2 Plus
Dgri\GH24120-PA 344 GH24120-PA 25..343 39..338 149 24.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:27
Subject Length Description Subject Range Query Range Score Percent Strand
meigo-PB 338 CG5802-PB 1..338 1..338 1732 100 Plus
meigo-PA 338 CG5802-PA 1..338 1..338 1732 100 Plus
sll-PB 465 CG7623-PB 151..441 15..308 295 25.8 Plus
sll-PA 465 CG7623-PA 151..441 15..308 295 25.8 Plus
Papst2-PA 396 CG7853-PA 60..371 7..321 210 25.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10138-PA 340 GI10138-PA 1..340 1..338 1397 80.6 Plus
Dmoj\GI24592-PA 469 GI24592-PA 155..465 15..324 293 25.7 Plus
Dmoj\GI12140-PA 318 GI12140-PA 60..294 85..322 166 27.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12272-PA 343 GL12272-PA 1..339 1..335 1584 87 Plus
Dper\GL21514-PA 460 GL21514-PA 146..436 15..308 295 26.1 Plus
Dper\GL16196-PA 392 GL16196-PA 54..368 5..322 178 25.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19140-PA 343 GA19140-PA 1..339 1..335 1584 87 Plus
Dpse\GA20487-PA 460 GA20487-PA 146..436 15..308 295 26.1 Plus
Dpse\GA20635-PA 392 GA20635-PA 54..368 5..322 178 25.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15070-PA 339 GM15070-PA 1..335 1..335 1765 100 Plus
Dsec\GM15246-PA 464 GM15246-PA 150..440 15..308 269 25.4 Plus
Dsec\GM25685-PA 386 GM25685-PA 50..362 7..322 180 25.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19404-PA 339 GD19404-PA 1..335 1..335 1765 100 Plus
Dsim\GD19171-PA 464 GD19171-PA 150..440 15..308 272 25.8 Plus
Dsim\GD14690-PA 386 GD14690-PA 50..362 7..322 181 25.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23356-PA 339 GJ23356-PA 1..339 1..338 1439 81.7 Plus
Dvir\GJ22657-PA 468 GJ22657-PA 154..464 15..324 283 25.4 Plus
Dvir\GJ13419-PA 402 GJ13419-PA 66..374 7..318 173 25.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14025-PA 343 GK14025-PA 1..343 1..338 1442 81.3 Plus
Dwil\GK12079-PA 461 GK12079-PA 147..460 15..331 283 24.2 Plus
Dwil\GK20462-PA 395 GK20462-PA 59..361 7..311 167 25.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25713-PA 339 GE25713-PA 1..339 1..338 1735 97.9 Plus
Dyak\GE25483-PA 464 GE25483-PA 150..440 15..308 275 26.4 Plus
Dyak\GE19898-PA 386 GE19898-PA 50..362 7..322 181 25.5 Plus