Clone LD32255 Report

Search the DGRC for LD32255

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:322
Well:55
Vector:pOT2
Associated Gene/Transcriptgrk-RA
Protein status:LD32255.pep: gold
Preliminary Size:1742
Sequenced Size:1710

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17610 2001-01-01 Release 2 assignment
CG17610 2001-07-04 Blastp of sequenced clone
CG17610 2003-01-01 Sim4 clustering to Release 3
grk 2008-04-29 Release 5.5 accounting
grk 2008-08-15 Release 5.9 accounting
grk 2008-12-18 5.12 accounting

Clone Sequence Records

LD32255.complete Sequence

1710 bp (1710 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051814

> LD32255.complete
AAGACCTAAAATCAAAGTGGAGCAGAGAAGAGCCCGCTTCCCGCGCTTGC
TGCTCTTTAGATTAACTAATTAATTACTTGCCTGATATATAAAATGATTC
ACGAGTCATTATAATAATTATAATGTCGAAGCCTTCTACAGGCCATATAG
CAGCTCCATAAAATCCACAAGGAGATGCAAGTGTGTAGTATGTTTCAGCT
TCTGTTGCGACGCCAAATTGCATTTGCGGCCAGCACGCCGCTCGATCCCT
CGATCGTTTAGACCCCTTCATTGACTCAGTTTTCCTAGTGGTGGACAATC
GGTCCACCCAATCAATATTTTTCGGAGCGCCACCCCAAGCGTTTTCCAAT
GATGCAAATCCCATTTACTCGGATTTTCAAAGTAATTTTCGTGCTCTCAA
CAATTGTCGCCGTCACAGATTGTTGTTCGAGCCGAATCTTACTTCTCCGA
GAGCATACGCTGAAAATTGTGCAGCATCAGCACAGCCACATGCACGAGCA
TGCGCACGAGCTGCAGCAGCAGATCCAGGAGACCGCGGTTGAGTTGCTCA
ATCGCCTGGAGCTGCAGCGCAAGCAACTGGAGGCCTCGGCCCAGGAGGAG
GCAGACCAGCTGCATCCCGATACGGATCCCAATCCGGACTCGGGCGGCCA
ACTGCCAAACGCAGACGACTCCATTGCTGCGGATCCGGAACAGGATGGGA
TAATTCTCGGATCCAGTACCGACACCTGGTTGGCCAGCGAAAGCAGCACA
CCAATCACTGATTCCGAGACAGTGACAACACCCGAAACTGTTACCCACAC
CGGAGAACCGCCACCTGACCCCAGTTCGTCCAGCACGCCTGACTCCACGA
CTCCCAGCCCGAACGACAAGGAGACAGAGATTCAGATGCTGCCCTGCAGC
GAAGCTTACAATACTAGCTTTTGCCTGAACGGCGGCCACTGCTTCCAGCA
TCCGATGGTGAACAACACAGTCTTCCATTCCTGCCTCTGCGTTAACGACT
ACGATGGAGAGCGGTGCGCCTACAAGAGCTGGAATGGTGACTACATCTAT
TCGCCTCCAACAGCGCAGCGGAAGGTCCGAATGGCGCACATCGTCTTCTC
CTTTCCCGTACTCCTCATGCTGTCGTCGCTCTACGTTCTCTTCGCAGCCG
TTTTCATGCTCCGCAATGTGCCGGATTATCGCCGGAAGCAGCAGCAACTA
CACCTGCATAAGCAGCGCTTTTTTGTCAGATGCTGAGATTTAGAATTTGA
TTTGGAAACAATTTGGTTTCACCTATATAAGCCTCCTCTTTGTTGGATGG
CAAATTCTTGTTGACCATATTTCTTTACGTTGCGCAGCGTAAAATTAACG
CTTTAATTTATTGAATACATTTAGTGTACTTAGTAGGATTTTCTATTTAG
TTGCAAAAGACGCACAAGTTAGTATTTGCTTTTCTTTATCATTTCTTAGT
TTCGTTTGTTTCGCTTTTGAAGCTTTCGTTGGAGCTTTTGTAGTTTGTTT
GTAGTAACATTTTGTTACGTTAAATTAACCATTACGAAATATAATGTAAT
CTTAGCGCTTACTCCAGTTACCAGGACAAGTGATTATTTTCGTAACACTC
TGTTACATTGTGTATATTGTAAAGAAAAACTATTTTGGTAGTGTATTAAA
GAAGAGGATTGGGACTCGACTCGAAACAGAATTAAAACATTCAAAAAAAA
AAAAAAAAAA

LD32255.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
grk-RA 1850 grk-RA 103..1798 1..1696 8480 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8429998..8430665 1692..1036 3140 98.4 Minus
chr2L 23010047 chr2L 8430798..8431420 1038..416 3115 100 Minus
chr2L 23010047 chr2L 8431936..8432195 418..159 1300 100 Minus
chr2L 23010047 chr2L 8432339..8432493 158..1 695 97.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:26:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8431082..8431742 1696..1036 3305 100 Minus
2L 23513712 2L 8431875..8432497 1038..416 3115 100 Minus
2L 23513712 2L 8433013..8433272 418..159 1300 100 Minus
2L 23513712 2L 8433415..8433572 158..1 790 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8431082..8431742 1696..1036 3305 100 Minus
2L 23513712 2L 8431875..8432497 1038..416 3115 100 Minus
2L 23513712 2L 8433013..8433272 418..159 1300 100 Minus
2L 23513712 2L 8433415..8433572 158..1 790 100 Minus
Blast to na_te.dros performed 2019-03-15 18:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2419 471..521 119 75 Plus

LD32255.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:29:43 Download gff for LD32255.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8429998..8430664 1037..1692 98 <- Minus
chr2L 8430800..8431417 419..1036 100 <- Minus
chr2L 8431936..8432195 159..418 100 <- Minus
chr2L 8432339..8432493 1..158 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:13:47 Download gff for LD32255.complete
Subject Subject Range Query Range Percent Splice Strand
grk-RA 1..888 349..1236 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:19:07 Download gff for LD32255.complete
Subject Subject Range Query Range Percent Splice Strand
grk-RA 1..888 349..1236 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:06:00 Download gff for LD32255.complete
Subject Subject Range Query Range Percent Splice Strand
grk-RA 1..888 349..1236 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:50:44 Download gff for LD32255.complete
Subject Subject Range Query Range Percent Splice Strand
grk-RA 1..888 349..1236 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:05:05 Download gff for LD32255.complete
Subject Subject Range Query Range Percent Splice Strand
grk-RA 1..888 349..1236 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:14:43 Download gff for LD32255.complete
Subject Subject Range Query Range Percent Splice Strand
grk-RA 27..1718 1..1692 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:19:06 Download gff for LD32255.complete
Subject Subject Range Query Range Percent Splice Strand
grk-RA 27..1718 1..1692 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:06:00 Download gff for LD32255.complete
Subject Subject Range Query Range Percent Splice Strand
grk-RA 27..1718 1..1692 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:50:44 Download gff for LD32255.complete
Subject Subject Range Query Range Percent Splice Strand
grk-RA 27..1718 1..1692 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:05:05 Download gff for LD32255.complete
Subject Subject Range Query Range Percent Splice Strand
grk-RA 27..1718 1..1692 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:29:43 Download gff for LD32255.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8431086..8431741 1037..1692 100 <- Minus
2L 8431877..8432494 419..1036 100 <- Minus
2L 8433013..8433272 159..418 100 <- Minus
2L 8433415..8433572 1..158 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:29:43 Download gff for LD32255.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8431086..8431741 1037..1692 100 <- Minus
2L 8431877..8432494 419..1036 100 <- Minus
2L 8433013..8433272 159..418 100 <- Minus
2L 8433415..8433572 1..158 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:29:43 Download gff for LD32255.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8431086..8431741 1037..1692 100 <- Minus
2L 8431877..8432494 419..1036 100 <- Minus
2L 8433013..8433272 159..418 100 <- Minus
2L 8433415..8433572 1..158 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:06:00 Download gff for LD32255.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8431086..8431741 1037..1692 100 <- Minus
arm_2L 8431877..8432494 419..1036 100 <- Minus
arm_2L 8433013..8433272 159..418 100 <- Minus
arm_2L 8433415..8433572 1..158 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:29:02 Download gff for LD32255.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8433415..8433572 1..158 100   Minus
2L 8431086..8431741 1037..1692 100 <- Minus
2L 8431877..8432494 419..1036 100 <- Minus
2L 8433013..8433272 159..418 100 <- Minus

LD32255.pep Sequence

Translation from 348 to 1235

> LD32255.pep
MMQIPFTRIFKVIFVLSTIVAVTDCCSSRILLLREHTLKIVQHQHSHMHE
HAHELQQQIQETAVELLNRLELQRKQLEASAQEEADQLHPDTDPNPDSGG
QLPNADDSIAADPEQDGIILGSSTDTWLASESSTPITDSETVTTPETVTH
TGEPPPDPSSSSTPDSTTPSPNDKETEIQMLPCSEAYNTSFCLNGGHCFQ
HPMVNNTVFHSCLCVNDYDGERCAYKSWNGDYIYSPPTAQRKVRMAHIVF
SFPVLLMLSSLYVLFAAVFMLRNVPDYRRKQQQLHLHKQRFFVRC*

LD32255.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14375-PA 299 GF14375-PA 1..299 1..295 872 62.2 Plus
Dana\GF21516-PA 230 GF21516-PA 57..208 119..263 442 61.2 Plus
Dana\GF20173-PA 149 GF20173-PA 1..134 1..137 292 55.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23439-PA 295 GG23439-PA 1..295 1..295 1382 94.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13486-PA 312 GH13486-PA 1..312 2..295 470 38.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:42
Subject Length Description Subject Range Query Range Score Percent Strand
grk-PA 295 CG17610-PA 1..295 1..295 1573 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17238-PA 333 GI17238-PA 219..333 181..295 358 57.8 Plus
Dmoj\GI17238-PA 333 GI17238-PA 1..42 2..43 156 76.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25799-PA 316 GL25799-PA 1..316 1..295 818 57.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25451-PA 316 GA25451-PA 1..316 1..295 806 57.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12935-PA 295 GM12935-PA 1..295 1..295 1570 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22401-PA 295 GD22401-PA 1..274 1..274 1445 97.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17997-PA 306 GJ17997-PA 1..306 2..295 479 40.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18382-PA 325 GK18382-PA 1..325 1..295 710 49.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10983-PA 295 GE10983-PA 1..295 1..295 1438 94.2 Plus

LD32255.hyp Sequence

Translation from 348 to 1235

> LD32255.hyp
MMQIPFTRIFKVIFVLSTIVAVTDCCSSRILLLREHTLKIVQHQHSHMHE
HAHELQQQIQETAVELLNRLELQRKQLEASAQEEADQLHPDTDPNPDSGG
QLPNADDSIAADPEQDGIILGSSTDTWLASESSTPITDSETVTTPETVTH
TGEPPPDPSSSSTPDSTTPSPNDKETEIQMLPCSEAYNTSFCLNGGHCFQ
HPMVNNTVFHSCLCVNDYDGERCAYKSWNGDYIYSPPTAQRKVRMAHIVF
SFPVLLMLSSLYVLFAAVFMLRNVPDYRRKQQQLHLHKQRFFVRC*

LD32255.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
grk-PA 295 CG17610-PA 1..295 1..295 1573 100 Plus