Clone LD32258 Report

Search the DGRC for LD32258

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:322
Well:58
Vector:pOT2
Associated Gene/TranscriptCG31643-RA
Protein status:LD32258.pep: gold
Preliminary Size:3093
Sequenced Size:2915

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31643 2001-07-04 Blastp of sequenced clone
CG31643 2003-01-01 Sim4 clustering to Release 3
CG31643 2008-04-29 Release 5.5 accounting
CG31643 2008-08-15 Release 5.9 accounting
CG31643 2008-12-18 5.12 accounting

Clone Sequence Records

LD32258.complete Sequence

2915 bp (2915 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051815

> LD32258.complete
TTATTATTCAACGATTTCTGAATAAGCGTGAGATAAAGTGGCATGTATCT
GAACCACCTGCCGCGGACACAATGGAAGTACCTACAATACCTTCTGCGAG
TGCGTCAGCTTCAGCTCCTGCGACGGCACGTTAACATTGGCGCAAAGCCG
CCCATCCAAACAGCTGCCTTGCTGCCGGCATTGGGCCAAAAACTGAGGAA
GCACTCGCAGCTGGTGAACGGAGATCTCCAAGACAAGTTTGGCGTGCCAC
GGGAACAGGATGCTCTTCTAACCCGACTGGAGGAGGCCAAGACGGGTAAC
CAGATTTTAGATGTGTTGGAGAGCTGTGACGGCCTGCAGAGCTCCCATGT
GGTGATGGGAATCTCACTGCTGTGGAACATCTATCACGACGCGGAGCAGG
CAAGTAAAGATGCCATCACGGATCGCGTGCTGCTTAACGTGCTCCCAAAG
TTGGCCCCTTATGTACACCAACTGGAGATCGATGATCTCAGTAGATGCTA
CCTGTACCTGCGCAAAATGCATATACCAAACTCCGAGGCAGTCGTGGAGG
CCGTGCTGACGAGATCTCTTCAATTAATCGAGTCACAAGTTGATGACGAA
GTCATTCCCTTGACCTCCTTGTCTCGCCTCTCGGTGGGCATCAACTTGGA
ACGCGACTTCTTCACTCCGCTTGTGTGTAGGAACTTTATTCCGCACCTGG
AACATCACATCAATTGGTGTCGCAGCGCAGAGCAGGTTCGCCTTCTGTCC
ACGTGCCTCTTTCAGCTACACTTTCTCATTGATGAGGAGCTGTTTACGCG
CTTCAAGTTGCGCTTGACTGAAATGATGCAAAGCGGCGTCCTCAGCAGCG
AAACCCCTAAGGCTCTTCTGAAGGTGATCCACATGCTGAATATTCCAGTG
TGGTCGCAGACCCACACCCAATTGATTCGGGAGGTCATGCTGGTCTTGCG
ACCTTGCATACACCAGATGGAGTCTGCAGATCTAAAGAGCATTTGTCGCA
CATTTTTGCATCATCAAGAACCCGCCGCACTGATAGAGCCGCTCAAGAAA
GCCCTTGAAAAGTTACTACAGGAAGAAGGCACTGCTGACGCCCTGTTTTG
TGCAGTTCCCTTTGCAACGCCACTGCAGAGAGACCAGTATCTGCATCAGT
TTAAGGAACTGCTCTACTCCGAAGAGGCCTGGCAGCAACCCAATGCGAGC
GGACATTTATTCAGCGTTCTGCGTGCACTAAAAGTCTCCGACATTGAATT
CTGCAACACATACTGGTCAGGAGTTGTAAAAGAGCTGGAGTCCTGTCCGG
AAAAGCATTTGCACCTACGGTTCCTGAGACACTGTCAACGCTATATGAAC
TTTAATAACAATCTGGGAGGAACCTACCGTCACTTAGAACTGGAACGAAA
GCTAAGTCGCATGTGCATGAATGCTATTGAGCATGACATAGCGGGAAGGC
TGCCAGCGAAGTTCGCACGACTTGCATCCTTTGTGCTAGCTTACGGGCAG
ACTCCGTTGGCCTGGAAGAAATTTCCCAACTTTTTGTTAAGCAAAATGCT
CGCAATGGCGCCCCAGCTTGGCATTCAGGATTGCTTTCTCCTCAGTCGCG
GCATGCAAATAGCCAGCGAACTAAGGTTTCGCCAGCATCTTCCGGCATTA
GCTGGCATGCAACTGTCCACAATGGACAGCATTCTCATCGGTTGTGCGGA
GAGGCACTTGAGAGATGCCGAAAAGGACCCTCTAAATGCCAGCGAATTGA
GCATGATTGTCAGAACACTCAGTCATCGCAAGAAGCTAAAGAATACGGTG
GTTTACAACCAGGCCCTGGCGCAGTACAAAAATCTGCACTGCAACGATCT
CAATTCTCGGGTGGTTCGGGACATGGCCTACAACTTCAACGCTTCGAATT
TCTTTGTTCCCGAGCTCCTGGAGTCCATGTTCGCCTACATTTCCGAACAG
CATGATCACGTTTCCGGCGACACAGTGGAGAAAGTGTTGACCTGCTCGTA
TAATTTGGGCTACATGCCAGCGTCCGTGGAGGCTCTAAACCACGCCTCCG
AAGTACTGCTAAGAGATTTTGACCAGATGAGCGGTTTATCGGTTGTCCAG
GCTTGTCTAGCACTGTGCTTTTACAAATCAATACCAGAGCAGCTAATCAA
TCAAGTATTCTGCGTGAAATTCATTCAGCGAATCGAGGATGAGATACAAG
TATGCTACTCAAAAGCAACGTATCCGGAGAGGGTCCTTAACCTGGTTATG
CAACTGAATCGCACAGTATGCCTGGACTTTCCCGAGGCGAATGTGCCCTG
GTTTCAACAAAACTACATCGAGGCGCAGATCAGCAAAAAATCCTTAATAC
CCAGTGAGTCCACAACAGAGGTGAAGCAGCTGCTGCATCAGCTTCTTCAA
AATGACAAGCATTTCCGCTGCAACCACACTACACCCTACGGCTACCAAAT
AGACTTTGTGATACATTTCGATCGGGATAAAAATCCCATCCCAGCACCTC
CCGTGGAGGCAACCATGTTGGATCGCATAACCAAAGTGGCAATACTACTG
CTCAAGCTCGACTCTTTTTGTGAAAACGATCTGACTGCATTGCGGGGTCC
TGAATCTTTGAAGATGCGACATCTAGAGATGATGGGCTACAAAGTGATGC
AGATCAACGAGCACGACTGGAACTCCAAGTATATGGCGTCATCAACAGCC
AAGGCCAACTACCTTAAATGCTTGTTACAAATTTCACATTAGCTTTCATT
TCTATTCGTTGCGACGACATTACTCATAAGTACGCTTATTTGAGTTTTAA
AGTTGTTTGAGTGTTTAAGTTTATTTTATAAAAATAGTAAACAAATTCGT
GTATATAGTATTTAGATATATCAGGTCATAAATGCCAAGAACCTAAAAAA
AAAAAAAAAAAAAAA

LD32258.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG31643-RA 3000 CG31643-RA 107..3000 1..2894 14470 100 Plus
ade2-RA 4320 ade2-RA 4214..4320 2895..2789 535 100 Minus
ade2-RB 4326 ade2-RB 4220..4326 2895..2789 535 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6037212..6038994 1..1783 8915 100 Plus
chr2L 23010047 chr2L 6039975..6040334 2535..2894 1800 100 Plus
chr2L 23010047 chr2L 6039059..6039338 1784..2063 1400 100 Plus
chr2L 23010047 chr2L 6039388..6039664 2062..2338 1385 100 Plus
chr2L 23010047 chr2L 6039720..6039915 2339..2534 980 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:26:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6038161..6039943 1..1783 8915 100 Plus
2L 23513712 2L 6040924..6041284 2535..2895 1805 100 Plus
2L 23513712 2L 6040008..6040287 1784..2063 1400 100 Plus
2L 23513712 2L 6040337..6040613 2062..2338 1385 100 Plus
2L 23513712 2L 6040669..6040864 2339..2534 980 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:53:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6038161..6039943 1..1783 8915 100 Plus
2L 23513712 2L 6040924..6041284 2535..2895 1805 100 Plus
2L 23513712 2L 6040008..6040287 1784..2063 1400 100 Plus
2L 23513712 2L 6040337..6040613 2062..2338 1385 100 Plus
2L 23513712 2L 6040669..6040864 2339..2534 980 100 Plus
Blast to na_te.dros performed 2019-03-15 22:27:15
Subject Length Description Subject Range Query Range Score Percent Strand
Transpac 5249 Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). 3775..3842 2791..2863 127 69.9 Plus

LD32258.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:28:26 Download gff for LD32258.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6037212..6038994 1..1783 100 -> Plus
chr2L 6039059..6039338 1784..2063 100 -> Plus
chr2L 6039390..6039664 2064..2338 100 -> Plus
chr2L 6039720..6039915 2339..2534 100 -> Plus
chr2L 6039975..6040334 2535..2894 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:13:48 Download gff for LD32258.complete
Subject Subject Range Query Range Percent Splice Strand
CG31643-RA 1..2700 43..2742 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:19:08 Download gff for LD32258.complete
Subject Subject Range Query Range Percent Splice Strand
CG31643-RA 1..2700 43..2742 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:20:19 Download gff for LD32258.complete
Subject Subject Range Query Range Percent Splice Strand
CG31643-RA 1..2700 43..2742 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:50:45 Download gff for LD32258.complete
Subject Subject Range Query Range Percent Splice Strand
CG31643-RA 1..2700 43..2742 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:23:02 Download gff for LD32258.complete
Subject Subject Range Query Range Percent Splice Strand
CG31643-RA 1..2700 43..2742 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:14:45 Download gff for LD32258.complete
Subject Subject Range Query Range Percent Splice Strand
CG31643-RA 1..2894 1..2894 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:19:08 Download gff for LD32258.complete
Subject Subject Range Query Range Percent Splice Strand
CG31643-RA 1..2894 1..2894 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:20:19 Download gff for LD32258.complete
Subject Subject Range Query Range Percent Splice Strand
CG31643-RA 1..2894 1..2894 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:50:45 Download gff for LD32258.complete
Subject Subject Range Query Range Percent Splice Strand
CG31643-RA 1..2894 1..2894 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:23:02 Download gff for LD32258.complete
Subject Subject Range Query Range Percent Splice Strand
CG31643-RA 45..2938 1..2894 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:26 Download gff for LD32258.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6038161..6039943 1..1783 100 -> Plus
2L 6040008..6040287 1784..2063 100 -> Plus
2L 6040339..6040613 2064..2338 100 -> Plus
2L 6040669..6040864 2339..2534 100 -> Plus
2L 6040924..6041283 2535..2894 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:26 Download gff for LD32258.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6038161..6039943 1..1783 100 -> Plus
2L 6040008..6040287 1784..2063 100 -> Plus
2L 6040339..6040613 2064..2338 100 -> Plus
2L 6040669..6040864 2339..2534 100 -> Plus
2L 6040924..6041283 2535..2894 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:26 Download gff for LD32258.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6038161..6039943 1..1783 100 -> Plus
2L 6040008..6040287 1784..2063 100 -> Plus
2L 6040339..6040613 2064..2338 100 -> Plus
2L 6040669..6040864 2339..2534 100 -> Plus
2L 6040924..6041283 2535..2894 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:20:19 Download gff for LD32258.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6038161..6039943 1..1783 100 -> Plus
arm_2L 6040008..6040287 1784..2063 100 -> Plus
arm_2L 6040339..6040613 2064..2338 100 -> Plus
arm_2L 6040669..6040864 2339..2534 100 -> Plus
arm_2L 6040924..6041283 2535..2894 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:29:04 Download gff for LD32258.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6038161..6039943 1..1783 100 -> Plus
2L 6040008..6040287 1784..2063 100 -> Plus
2L 6040339..6040613 2064..2338 100 -> Plus
2L 6040669..6040864 2339..2534 100 -> Plus
2L 6040924..6041283 2535..2894 100   Plus

LD32258.pep Sequence

Translation from 42 to 2741

> LD32258.pep
MYLNHLPRTQWKYLQYLLRVRQLQLLRRHVNIGAKPPIQTAALLPALGQK
LRKHSQLVNGDLQDKFGVPREQDALLTRLEEAKTGNQILDVLESCDGLQS
SHVVMGISLLWNIYHDAEQASKDAITDRVLLNVLPKLAPYVHQLEIDDLS
RCYLYLRKMHIPNSEAVVEAVLTRSLQLIESQVDDEVIPLTSLSRLSVGI
NLERDFFTPLVCRNFIPHLEHHINWCRSAEQVRLLSTCLFQLHFLIDEEL
FTRFKLRLTEMMQSGVLSSETPKALLKVIHMLNIPVWSQTHTQLIREVML
VLRPCIHQMESADLKSICRTFLHHQEPAALIEPLKKALEKLLQEEGTADA
LFCAVPFATPLQRDQYLHQFKELLYSEEAWQQPNASGHLFSVLRALKVSD
IEFCNTYWSGVVKELESCPEKHLHLRFLRHCQRYMNFNNNLGGTYRHLEL
ERKLSRMCMNAIEHDIAGRLPAKFARLASFVLAYGQTPLAWKKFPNFLLS
KMLAMAPQLGIQDCFLLSRGMQIASELRFRQHLPALAGMQLSTMDSILIG
CAERHLRDAEKDPLNASELSMIVRTLSHRKKLKNTVVYNQALAQYKNLHC
NDLNSRVVRDMAYNFNASNFFVPELLESMFAYISEQHDHVSGDTVEKVLT
CSYNLGYMPASVEALNHASEVLLRDFDQMSGLSVVQACLALCFYKSIPEQ
LINQVFCVKFIQRIEDEIQVCYSKATYPERVLNLVMQLNRTVCLDFPEAN
VPWFQQNYIEAQISKKSLIPSESTTEVKQLLHQLLQNDKHFRCNHTTPYG
YQIDFVIHFDRDKNPIPAPPVEATMLDRITKVAILLLKLDSFCENDLTAL
RGPESLKMRHLEMMGYKVMQINEHDWNSKYMASSTAKANYLKCLLQISH*

LD32258.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:08:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14495-PA 904 GF14495-PA 1..904 1..899 3498 70.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23919-PA 899 GG23919-PA 1..899 1..899 4335 89.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10793-PA 924 GH10793-PA 1..924 1..899 3129 65 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG31643-PB 899 CG31643-PB 1..899 1..899 4684 100 Plus
CG31643-PA 899 CG31643-PA 1..899 1..899 4684 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17304-PA 921 GI17304-PA 1..921 1..899 3243 65 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19052-PA 959 GL19052-PA 56..959 1..899 3404 70.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16360-PA 959 GA16360-PA 56..959 1..899 3391 70.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18592-PA 899 GM18592-PA 1..899 1..899 4503 94.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23379-PA 899 GD23379-PA 1..899 1..899 4519 94.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15722-PA 914 GJ15722-PA 1..913 1..898 3175 66.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14716-PA 876 GK14716-PA 1..876 1..899 3156 66.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25833-PA 899 GE25833-PA 1..899 1..899 4231 89 Plus

LD32258.hyp Sequence

Translation from 42 to 2741

> LD32258.hyp
MYLNHLPRTQWKYLQYLLRVRQLQLLRRHVNIGAKPPIQTAALLPALGQK
LRKHSQLVNGDLQDKFGVPREQDALLTRLEEAKTGNQILDVLESCDGLQS
SHVVMGISLLWNIYHDAEQASKDAITDRVLLNVLPKLAPYVHQLEIDDLS
RCYLYLRKMHIPNSEAVVEAVLTRSLQLIESQVDDEVIPLTSLSRLSVGI
NLERDFFTPLVCRNFIPHLEHHINWCRSAEQVRLLSTCLFQLHFLIDEEL
FTRFKLRLTEMMQSGVLSSETPKALLKVIHMLNIPVWSQTHTQLIREVML
VLRPCIHQMESADLKSICRTFLHHQEPAALIEPLKKALEKLLQEEGTADA
LFCAVPFATPLQRDQYLHQFKELLYSEEAWQQPNASGHLFSVLRALKVSD
IEFCNTYWSGVVKELESCPEKHLHLRFLRHCQRYMNFNNNLGGTYRHLEL
ERKLSRMCMNAIEHDIAGRLPAKFARLASFVLAYGQTPLAWKKFPNFLLS
KMLAMAPQLGIQDCFLLSRGMQIASELRFRQHLPALAGMQLSTMDSILIG
CAERHLRDAEKDPLNASELSMIVRTLSHRKKLKNTVVYNQALAQYKNLHC
NDLNSRVVRDMAYNFNASNFFVPELLESMFAYISEQHDHVSGDTVEKVLT
CSYNLGYMPASVEALNHASEVLLRDFDQMSGLSVVQACLALCFYKSIPEQ
LINQVFCVKFIQRIEDEIQVCYSKATYPERVLNLVMQLNRTVCLDFPEAN
VPWFQQNYIEAQISKKSLIPSESTTEVKQLLHQLLQNDKHFRCNHTTPYG
YQIDFVIHFDRDKNPIPAPPVEATMLDRITKVAILLLKLDSFCENDLTAL
RGPESLKMRHLEMMGYKVMQINEHDWNSKYMASSTAKANYLKCLLQISH*

LD32258.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG31643-PB 899 CG31643-PB 1..899 1..899 4684 100 Plus
CG31643-PA 899 CG31643-PA 1..899 1..899 4684 100 Plus