Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
LD32354.complete Sequence
1259 bp (1259 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058626
> LD32354.complete
GAAGTCTAAGTTTTGTTAAATTTATGGAAAAGGAATCCAATTTATCGGAC
AACTTGCAGTCCCGGTTATTTGCACTGGGTCCTGCCCCGCCAGGATTTCG
TCCACCGGATGCTACCGCCTTTGCCACAGCGGAGTCAAATCTTCGTAATG
CCATCCGCTACCTTAATGATACCTATGGCGAGCTCGATCAGCTGCGCACT
GTCATCCAGAAGGAGAAGAATAACTCGAAGCGTACGTCCTACAAGGCGCA
GTCCATGATGCTTGCCATGCAAGTGATACGTTTCAAAGGACTTATTGGGA
AGTACAGGGACATTCTGATTGGCCTGCAGGATGCCGAAATCATCAAGGTC
AAACAATACATAGAGCAAATGGTGGAGATGAGGAACAAAATCCAGGCAAA
GACCGATCCCACACAGCGCGAGTTCCAAGTGGGCAGCTCAATCTCACTGG
TGCAGGAACAGCGCAAGACCAAGAGAATCTGCCGCAGGTGGCGGGATCGC
CTGGTCCAGCTGACGGAGGCCAAGATGGACAAAACTGAGCAACTTACTGA
GAAACCAAAGCTGATCAATAAACCTAGAAATATGTTAAATGCAAAAACCA
ACAAGTGGAAGGAAGCTGTAAGCTTGCAACAAAGCGGTCTAATTAAAAGT
GGCTGTAAGAGGTGTGAATACCTAAGAAAGCTGACTAAGAATCGTCCATC
CAAACTTTGTAAGGTGTGTAAAAAATGGTCTGATGATGAAAAAGCAAAAG
CGGCAGGAAATAAGAAAGCCAACAAAACGCCAATAATGGCGAAGTCGAAA
AAATTAGAAGTACGCGTGCGTACGGATTCTGAAGAAGCTATAATTAAAAT
AGAGATAGAGCATGGTGAATTTACCGATGAAGAGGAAATTGGGTCATTGG
AAAAGGAAACGACCTTAAAAGATGAGATCAAGGAGACTGTTGAATCTCAC
GACACGGCAGCAGTTGAGGAGGAAAATGAGACCAGTCAAGACGATGTGGA
CCCCAAAGTAGTCGCTTCCTTACAAAATTCACTGAAATCCATCGACTGTA
AAAATATGGCCTTGGCCTACGTGAAGGTCTTACAGGAGTACGCCATGTTA
AATGATAACTATCGGGCCATTGGACTACTTACTGAAGTTGAAAAATCAGT
TTTAAATCCGCCTCAGAACGAGGATTTCGATCTATGATCTTATTGACGCC
ACAAAAATAAAGTTTAGTTTTTATATGTAATCTACAATTAAAAAAAAAAA
AAAAAAAAA
LD32354.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:18:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIalpha-i3-RA | 1501 | CkIIalpha-i3-RA | 150..1392 | 1..1243 | 6215 | 100 | Plus |
CkIIalpha-i3-RB | 1295 | CkIIalpha-i3-RB | 70..1253 | 60..1243 | 5920 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:02:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 709556..710124 | 569..1 | 2815 | 99.6 | Minus |
chr3L | 24539361 | chr3L | 708478..708750 | 1239..967 | 1350 | 99.6 | Minus |
chr3L | 24539361 | chr3L | 709151..709310 | 789..630 | 740 | 97.5 | Minus |
chr3L | 24539361 | chr3L | 708899..708975 | 935..859 | 385 | 100 | Minus |
chr3L | 24539361 | chr3L | 709031..709103 | 860..788 | 365 | 100 | Minus |
chr3L | 24539361 | chr3L | 709375..709431 | 626..570 | 255 | 96.5 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:26:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:02:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 709738..710306 | 569..1 | 2845 | 100 | Minus |
3L | 28110227 | 3L | 708654..708930 | 1243..967 | 1385 | 100 | Minus |
3L | 28110227 | 3L | 709332..709495 | 789..626 | 820 | 100 | Minus |
3L | 28110227 | 3L | 709080..709156 | 935..859 | 385 | 100 | Minus |
3L | 28110227 | 3L | 709212..709284 | 860..788 | 365 | 100 | Minus |
3L | 28110227 | 3L | 709557..709613 | 626..570 | 285 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 709738..710306 | 569..1 | 2845 | 100 | Minus |
3L | 28103327 | 3L | 708654..708930 | 1243..967 | 1385 | 100 | Minus |
3L | 28103327 | 3L | 709332..709495 | 789..626 | 820 | 100 | Minus |
3L | 28103327 | 3L | 709080..709156 | 935..859 | 385 | 100 | Minus |
3L | 28103327 | 3L | 709212..709284 | 860..788 | 365 | 100 | Minus |
3L | 28103327 | 3L | 709557..709613 | 626..570 | 285 | 100 | Minus |
3L | 28103327 | 3L | 708990..709025 | 969..934 | 180 | 100 | Minus |
Blast to na_te.dros performed 2019-03-15 16:02:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blood | 7410 | blood BLOOD 7410bp | 6503..6682 | 738..925 | 118 | 57.6 | Plus |
LD32354.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:03:13 Download gff for
LD32354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 708478..708748 | 969..1239 | 99 | <- | Minus |
chr3L | 708811..708843 | 936..968 | 100 | <- | Minus |
chr3L | 708899..708973 | 861..935 | 100 | <- | Minus |
chr3L | 709031..709102 | 789..860 | 100 | <- | Minus |
chr3L | 709152..709313 | 627..788 | 96 | <- | Minus |
chr3L | 709375..709431 | 570..626 | 96 | <- | Minus |
chr3L | 709556..710124 | 1..569 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:13:53 Download gff for
LD32354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i3-RA | 1..1164 | 24..1187 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:01:17 Download gff for
LD32354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i3-RA | 1..1164 | 24..1187 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:50:18 Download gff for
LD32354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i3-RA | 1..1164 | 24..1187 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:31:45 Download gff for
LD32354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i3-RA | 1..1164 | 24..1187 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:24:29 Download gff for
LD32354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i3-RA | 1..1164 | 24..1187 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:49:07 Download gff for
LD32354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i3-RA | 150..1388 | 1..1239 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:01:17 Download gff for
LD32354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i3-RA | 150..1388 | 1..1239 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:18 Download gff for
LD32354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i3-RA | 54..1292 | 1..1239 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:31:46 Download gff for
LD32354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i3-RA | 150..1388 | 1..1239 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:24:29 Download gff for
LD32354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i3-RA | 37..1275 | 1..1239 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:03:13 Download gff for
LD32354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 708658..708928 | 969..1239 | 100 | <- | Minus |
3L | 708991..709023 | 936..968 | 100 | <- | Minus |
3L | 709080..709154 | 861..935 | 100 | <- | Minus |
3L | 709212..709283 | 789..860 | 100 | <- | Minus |
3L | 709333..709494 | 627..788 | 100 | <- | Minus |
3L | 709557..709613 | 570..626 | 100 | <- | Minus |
3L | 709738..710306 | 1..569 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:03:13 Download gff for
LD32354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 708658..708928 | 969..1239 | 100 | <- | Minus |
3L | 708991..709023 | 936..968 | 100 | <- | Minus |
3L | 709080..709154 | 861..935 | 100 | <- | Minus |
3L | 709212..709283 | 789..860 | 100 | <- | Minus |
3L | 709333..709494 | 627..788 | 100 | <- | Minus |
3L | 709557..709613 | 570..626 | 100 | <- | Minus |
3L | 709738..710306 | 1..569 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:03:13 Download gff for
LD32354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 708658..708928 | 969..1239 | 100 | <- | Minus |
3L | 708991..709023 | 936..968 | 100 | <- | Minus |
3L | 709080..709154 | 861..935 | 100 | <- | Minus |
3L | 709212..709283 | 789..860 | 100 | <- | Minus |
3L | 709333..709494 | 627..788 | 100 | <- | Minus |
3L | 709557..709613 | 570..626 | 100 | <- | Minus |
3L | 709738..710306 | 1..569 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:18 Download gff for
LD32354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 708991..709023 | 936..968 | 100 | <- | Minus |
arm_3L | 709080..709154 | 861..935 | 100 | <- | Minus |
arm_3L | 709212..709283 | 789..860 | 100 | <- | Minus |
arm_3L | 709333..709494 | 627..788 | 100 | <- | Minus |
arm_3L | 709557..709613 | 570..626 | 100 | <- | Minus |
arm_3L | 708658..708928 | 969..1239 | 100 | <- | Minus |
arm_3L | 709738..710306 | 1..569 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:08:20 Download gff for
LD32354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 708658..708928 | 969..1239 | 100 | <- | Minus |
3L | 708991..709023 | 936..968 | 100 | <- | Minus |
3L | 709080..709154 | 861..935 | 100 | <- | Minus |
3L | 709212..709283 | 789..860 | 100 | <- | Minus |
3L | 709333..709494 | 627..788 | 100 | <- | Minus |
3L | 709557..709613 | 570..626 | 100 | <- | Minus |
3L | 709738..710306 | 1..569 | 100 | | Minus |
LD32354.hyp Sequence
Translation from 2 to 1186
> LD32354.hyp
SLSFVKFMEKESNLSDNLQSRLFALGPAPPGFRPPDATAFATAESNLRNA
IRYLNDTYGELDQLRTVIQKEKNNSKRTSYKAQSMMLAMQVIRFKGLIGK
YRDILIGLQDAEIIKVKQYIEQMVEMRNKIQAKTDPTQREFQVGSSISLV
QEQRKTKRICRRWRDRLVQLTEAKMDKTEQLTEKPKLINKPRNMLNAKTN
KWKEAVSLQQSGLIKSGCKRCEYLRKLTKNRPSKLCKVCKKWSDDEKAKA
AGNKKANKTPIMAKSKKLEVRVRTDSEEAIIKIEIEHGEFTDEEEIGSLE
KETTLKDEIKETVESHDTAAVEEENETSQDDVDPKVVASLQNSLKSIDCK
NMALAYVKVLQEYAMLNDNYRAIGLLTEVEKSVLNPPQNEDFDL*
LD32354.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:12:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIalpha-i3-PC | 387 | CG3217-PC | 1..387 | 8..394 | 1962 | 100 | Plus |
CkIIalpha-i3-PA | 387 | CG3217-PA | 1..387 | 8..394 | 1962 | 100 | Plus |
CkIIalpha-i3-PB | 391 | CG3217-PB | 17..391 | 20..394 | 1903 | 100 | Plus |
LD32354.pep Sequence
Translation from 23 to 1186
> LD32354.pep
MEKESNLSDNLQSRLFALGPAPPGFRPPDATAFATAESNLRNAIRYLNDT
YGELDQLRTVIQKEKNNSKRTSYKAQSMMLAMQVIRFKGLIGKYRDILIG
LQDAEIIKVKQYIEQMVEMRNKIQAKTDPTQREFQVGSSISLVQEQRKTK
RICRRWRDRLVQLTEAKMDKTEQLTEKPKLINKPRNMLNAKTNKWKEAVS
LQQSGLIKSGCKRCEYLRKLTKNRPSKLCKVCKKWSDDEKAKAAGNKKAN
KTPIMAKSKKLEVRVRTDSEEAIIKIEIEHGEFTDEEEIGSLEKETTLKD
EIKETVESHDTAAVEEENETSQDDVDPKVVASLQNSLKSIDCKNMALAYV
KVLQEYAMLNDNYRAIGLLTEVEKSVLNPPQNEDFDL*
LD32354.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:45:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG14641-PA | 389 | GG14641-PA | 1..388 | 1..386 | 1350 | 67.9 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIalpha-i3-PC | 387 | CG3217-PC | 1..387 | 1..387 | 1962 | 100 | Plus |
CkIIalpha-i3-PA | 387 | CG3217-PA | 1..387 | 1..387 | 1962 | 100 | Plus |
CkIIalpha-i3-PB | 391 | CG3217-PB | 17..391 | 13..387 | 1903 | 100 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:45:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM14256-PA | 409 | GM14256-PA | 1..409 | 1..387 | 1522 | 76.3 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:45:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD13512-PA | 433 | GD13512-PA | 24..433 | 1..387 | 1540 | 76.8 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:45:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ13233-PA | 368 | GJ13233-PA | 320..368 | 339..387 | 150 | 59.2 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:45:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE20999-PA | 388 | GE20999-PA | 1..388 | 1..387 | 1283 | 67 | Plus |
Dyak\GE15056-PA | 95 | GE15056-PA | 1..95 | 282..387 | 346 | 67 | Plus |