Clone LD32354 Report

Search the DGRC for LD32354

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:323
Well:54
Vector:pOT2
Associated Gene/TranscriptCkIIalpha-i3-RA
Protein status:LD32354.pep: gold
Preliminary Size:1439
Sequenced Size:1259

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3217 2001-01-01 Release 2 assignment
CG3217 2001-09-19 Blastp of sequenced clone
CG3217 2003-01-01 Sim4 clustering to Release 3
CkIIalpha-i3 2008-04-29 Release 5.5 accounting
CkIIalpha-i3 2008-08-15 Release 5.9 accounting
CkIIalpha-i3 2008-12-18 5.12 accounting

Clone Sequence Records

LD32354.complete Sequence

1259 bp (1259 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058626

> LD32354.complete
GAAGTCTAAGTTTTGTTAAATTTATGGAAAAGGAATCCAATTTATCGGAC
AACTTGCAGTCCCGGTTATTTGCACTGGGTCCTGCCCCGCCAGGATTTCG
TCCACCGGATGCTACCGCCTTTGCCACAGCGGAGTCAAATCTTCGTAATG
CCATCCGCTACCTTAATGATACCTATGGCGAGCTCGATCAGCTGCGCACT
GTCATCCAGAAGGAGAAGAATAACTCGAAGCGTACGTCCTACAAGGCGCA
GTCCATGATGCTTGCCATGCAAGTGATACGTTTCAAAGGACTTATTGGGA
AGTACAGGGACATTCTGATTGGCCTGCAGGATGCCGAAATCATCAAGGTC
AAACAATACATAGAGCAAATGGTGGAGATGAGGAACAAAATCCAGGCAAA
GACCGATCCCACACAGCGCGAGTTCCAAGTGGGCAGCTCAATCTCACTGG
TGCAGGAACAGCGCAAGACCAAGAGAATCTGCCGCAGGTGGCGGGATCGC
CTGGTCCAGCTGACGGAGGCCAAGATGGACAAAACTGAGCAACTTACTGA
GAAACCAAAGCTGATCAATAAACCTAGAAATATGTTAAATGCAAAAACCA
ACAAGTGGAAGGAAGCTGTAAGCTTGCAACAAAGCGGTCTAATTAAAAGT
GGCTGTAAGAGGTGTGAATACCTAAGAAAGCTGACTAAGAATCGTCCATC
CAAACTTTGTAAGGTGTGTAAAAAATGGTCTGATGATGAAAAAGCAAAAG
CGGCAGGAAATAAGAAAGCCAACAAAACGCCAATAATGGCGAAGTCGAAA
AAATTAGAAGTACGCGTGCGTACGGATTCTGAAGAAGCTATAATTAAAAT
AGAGATAGAGCATGGTGAATTTACCGATGAAGAGGAAATTGGGTCATTGG
AAAAGGAAACGACCTTAAAAGATGAGATCAAGGAGACTGTTGAATCTCAC
GACACGGCAGCAGTTGAGGAGGAAAATGAGACCAGTCAAGACGATGTGGA
CCCCAAAGTAGTCGCTTCCTTACAAAATTCACTGAAATCCATCGACTGTA
AAAATATGGCCTTGGCCTACGTGAAGGTCTTACAGGAGTACGCCATGTTA
AATGATAACTATCGGGCCATTGGACTACTTACTGAAGTTGAAAAATCAGT
TTTAAATCCGCCTCAGAACGAGGATTTCGATCTATGATCTTATTGACGCC
ACAAAAATAAAGTTTAGTTTTTATATGTAATCTACAATTAAAAAAAAAAA
AAAAAAAAA

LD32354.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIalpha-i3-RA 1501 CkIIalpha-i3-RA 150..1392 1..1243 6215 100 Plus
CkIIalpha-i3-RB 1295 CkIIalpha-i3-RB 70..1253 60..1243 5920 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 709556..710124 569..1 2815 99.6 Minus
chr3L 24539361 chr3L 708478..708750 1239..967 1350 99.6 Minus
chr3L 24539361 chr3L 709151..709310 789..630 740 97.5 Minus
chr3L 24539361 chr3L 708899..708975 935..859 385 100 Minus
chr3L 24539361 chr3L 709031..709103 860..788 365 100 Minus
chr3L 24539361 chr3L 709375..709431 626..570 255 96.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:26:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 709738..710306 569..1 2845 100 Minus
3L 28110227 3L 708654..708930 1243..967 1385 100 Minus
3L 28110227 3L 709332..709495 789..626 820 100 Minus
3L 28110227 3L 709080..709156 935..859 385 100 Minus
3L 28110227 3L 709212..709284 860..788 365 100 Minus
3L 28110227 3L 709557..709613 626..570 285 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 709738..710306 569..1 2845 100 Minus
3L 28103327 3L 708654..708930 1243..967 1385 100 Minus
3L 28103327 3L 709332..709495 789..626 820 100 Minus
3L 28103327 3L 709080..709156 935..859 385 100 Minus
3L 28103327 3L 709212..709284 860..788 365 100 Minus
3L 28103327 3L 709557..709613 626..570 285 100 Minus
3L 28103327 3L 708990..709025 969..934 180 100 Minus
Blast to na_te.dros performed 2019-03-15 16:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
blood 7410 blood BLOOD 7410bp 6503..6682 738..925 118 57.6 Plus

LD32354.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:03:13 Download gff for LD32354.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 708478..708748 969..1239 99 <- Minus
chr3L 708811..708843 936..968 100 <- Minus
chr3L 708899..708973 861..935 100 <- Minus
chr3L 709031..709102 789..860 100 <- Minus
chr3L 709152..709313 627..788 96 <- Minus
chr3L 709375..709431 570..626 96 <- Minus
chr3L 709556..710124 1..569 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:13:53 Download gff for LD32354.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i3-RA 1..1164 24..1187 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:01:17 Download gff for LD32354.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i3-RA 1..1164 24..1187 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:50:18 Download gff for LD32354.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i3-RA 1..1164 24..1187 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:31:45 Download gff for LD32354.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i3-RA 1..1164 24..1187 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:24:29 Download gff for LD32354.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i3-RA 1..1164 24..1187 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:49:07 Download gff for LD32354.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i3-RA 150..1388 1..1239 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:01:17 Download gff for LD32354.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i3-RA 150..1388 1..1239 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:18 Download gff for LD32354.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i3-RA 54..1292 1..1239 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:31:46 Download gff for LD32354.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i3-RA 150..1388 1..1239 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:24:29 Download gff for LD32354.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i3-RA 37..1275 1..1239 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:03:13 Download gff for LD32354.complete
Subject Subject Range Query Range Percent Splice Strand
3L 708658..708928 969..1239 100 <- Minus
3L 708991..709023 936..968 100 <- Minus
3L 709080..709154 861..935 100 <- Minus
3L 709212..709283 789..860 100 <- Minus
3L 709333..709494 627..788 100 <- Minus
3L 709557..709613 570..626 100 <- Minus
3L 709738..710306 1..569 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:03:13 Download gff for LD32354.complete
Subject Subject Range Query Range Percent Splice Strand
3L 708658..708928 969..1239 100 <- Minus
3L 708991..709023 936..968 100 <- Minus
3L 709080..709154 861..935 100 <- Minus
3L 709212..709283 789..860 100 <- Minus
3L 709333..709494 627..788 100 <- Minus
3L 709557..709613 570..626 100 <- Minus
3L 709738..710306 1..569 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:03:13 Download gff for LD32354.complete
Subject Subject Range Query Range Percent Splice Strand
3L 708658..708928 969..1239 100 <- Minus
3L 708991..709023 936..968 100 <- Minus
3L 709080..709154 861..935 100 <- Minus
3L 709212..709283 789..860 100 <- Minus
3L 709333..709494 627..788 100 <- Minus
3L 709557..709613 570..626 100 <- Minus
3L 709738..710306 1..569 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:18 Download gff for LD32354.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 708991..709023 936..968 100 <- Minus
arm_3L 709080..709154 861..935 100 <- Minus
arm_3L 709212..709283 789..860 100 <- Minus
arm_3L 709333..709494 627..788 100 <- Minus
arm_3L 709557..709613 570..626 100 <- Minus
arm_3L 708658..708928 969..1239 100 <- Minus
arm_3L 709738..710306 1..569 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:08:20 Download gff for LD32354.complete
Subject Subject Range Query Range Percent Splice Strand
3L 708658..708928 969..1239 100 <- Minus
3L 708991..709023 936..968 100 <- Minus
3L 709080..709154 861..935 100 <- Minus
3L 709212..709283 789..860 100 <- Minus
3L 709333..709494 627..788 100 <- Minus
3L 709557..709613 570..626 100 <- Minus
3L 709738..710306 1..569 100   Minus

LD32354.hyp Sequence

Translation from 2 to 1186

> LD32354.hyp
SLSFVKFMEKESNLSDNLQSRLFALGPAPPGFRPPDATAFATAESNLRNA
IRYLNDTYGELDQLRTVIQKEKNNSKRTSYKAQSMMLAMQVIRFKGLIGK
YRDILIGLQDAEIIKVKQYIEQMVEMRNKIQAKTDPTQREFQVGSSISLV
QEQRKTKRICRRWRDRLVQLTEAKMDKTEQLTEKPKLINKPRNMLNAKTN
KWKEAVSLQQSGLIKSGCKRCEYLRKLTKNRPSKLCKVCKKWSDDEKAKA
AGNKKANKTPIMAKSKKLEVRVRTDSEEAIIKIEIEHGEFTDEEEIGSLE
KETTLKDEIKETVESHDTAAVEEENETSQDDVDPKVVASLQNSLKSIDCK
NMALAYVKVLQEYAMLNDNYRAIGLLTEVEKSVLNPPQNEDFDL*

LD32354.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:12:54
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIalpha-i3-PC 387 CG3217-PC 1..387 8..394 1962 100 Plus
CkIIalpha-i3-PA 387 CG3217-PA 1..387 8..394 1962 100 Plus
CkIIalpha-i3-PB 391 CG3217-PB 17..391 20..394 1903 100 Plus

LD32354.pep Sequence

Translation from 23 to 1186

> LD32354.pep
MEKESNLSDNLQSRLFALGPAPPGFRPPDATAFATAESNLRNAIRYLNDT
YGELDQLRTVIQKEKNNSKRTSYKAQSMMLAMQVIRFKGLIGKYRDILIG
LQDAEIIKVKQYIEQMVEMRNKIQAKTDPTQREFQVGSSISLVQEQRKTK
RICRRWRDRLVQLTEAKMDKTEQLTEKPKLINKPRNMLNAKTNKWKEAVS
LQQSGLIKSGCKRCEYLRKLTKNRPSKLCKVCKKWSDDEKAKAAGNKKAN
KTPIMAKSKKLEVRVRTDSEEAIIKIEIEHGEFTDEEEIGSLEKETTLKD
EIKETVESHDTAAVEEENETSQDDVDPKVVASLQNSLKSIDCKNMALAYV
KVLQEYAMLNDNYRAIGLLTEVEKSVLNPPQNEDFDL*

LD32354.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14641-PA 389 GG14641-PA 1..388 1..386 1350 67.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:16
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIalpha-i3-PC 387 CG3217-PC 1..387 1..387 1962 100 Plus
CkIIalpha-i3-PA 387 CG3217-PA 1..387 1..387 1962 100 Plus
CkIIalpha-i3-PB 391 CG3217-PB 17..391 13..387 1903 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14256-PA 409 GM14256-PA 1..409 1..387 1522 76.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13512-PA 433 GD13512-PA 24..433 1..387 1540 76.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13233-PA 368 GJ13233-PA 320..368 339..387 150 59.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20999-PA 388 GE20999-PA 1..388 1..387 1283 67 Plus
Dyak\GE15056-PA 95 GE15056-PA 1..95 282..387 346 67 Plus