Clone LD32366 Report

Search the DGRC for LD32366

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:323
Well:66
Vector:pOT2
Associated Gene/TranscriptCG5850-RA
Protein status:LD32366.pep: gold
Preliminary Size:2638
Sequenced Size:2742

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5850 2001-01-01 Release 2 assignment
CG5850 2001-07-04 Blastp of sequenced clone
CG5850 2008-04-29 Release 5.5 accounting
CG5850 2008-08-15 Release 5.9 accounting
CG5850 2008-12-18 5.12 accounting

Clone Sequence Records

LD32366.complete Sequence

2742 bp (2742 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051817

> LD32366.complete
ACCCACGAACTGGATTCCTCACAAAAGAAGGGCACGAAAGCCGCGATATT
ACTGCCAATAGGACTGAAACCAATAGATCGAAGAACTTGCTCTGCCAGCA
GGAGATCTCTGAAAATGCGCCTCCAGCGTGGGTGCCACCGCCGTGTCCTG
TAATCTGCTGTGAGAGAATTTCTGGCGGAGAAGAGCGGATCGGAGCGGAA
GAAAGCGGAAACCCAAGTGAAAACAGAATCGGGGCGGCGGCGTCGACGTC
AACGAATCAACGATATCAACCCGGATATTAGGTACTCCGGTGAACAGCAC
ATTTCAAGGAGCATTCCCAAGGAGTGCACCAGAGGCAAAGATGTGCAGCT
TGGACGTAAGACGCTTCTTCGAGGAGTGGCGCATCTGGATACGCCCGCTG
CTCATTATCACCTATGTCATCTTCGCCATCATCGTGGTCCCGCTGCTCAT
TGTGAACTCCGTGAAGGATGGCTTCCAGCGCAATGACCAGCTCATTCTCA
TCGGCGGTCTGTTTGTGTTGTCCGCAGTGCCCGTGTCCATTTGGCATATC
ATCCAACACGTCATTCATTTTACCAAGCCCATACTGCAGAAGCACATAAT
CCGCATATTGTGGATGGTGCCTATCTACGCCTTGAACGCGTGGATCGGCC
TTTTCTTTCCGAAGCACTCCATCTACGTGGACTCACTGCGCGAGTGCTAC
GAGGCGTACGTTATCTACAACTTCATGGTGTACCTGCTCAACTACTTGAA
TCTCGGTATGGACCTAGAGGCCACAATGGAGTACAAGCCGCAGGTGCCTC
ACTTCTTTCCGCTCTGCTGCATGCGGCCGTGGGTGATGGGTCGTGAATTC
ATCCACAACTGCAAGCACGGCATCCTCCAGTACACGGTCGTGCGCCCCAT
TACCACCTTTATCTCTGTCATCTGCGAGCTATGCGGCGTTTACGGCGAGG
GCGAGTTTGCGGGCAACGTGGCCTTCCCCTATATTGTGGTGGTCAACAAT
ATATCCCAGTTCGTGGCCATGTATTGCCTGGTGCTATTTTACCGTGCAAA
CAAGGAGGATCTCAAACCAATGAAGCCTATTCCCAAATTCCTGTGCATCA
AGGCTGTGGTGTTTTTCTCGTTTTTCCAAGGAGTGCTACTCAACGTACTG
GTATACTATAATATTATTAAGGACATCTTTGGGTCGGATGTGGGAGACAC
CAATCTGGCTTCCCTGCTTCAGAATTTCCTCATCTGCATCGAAATGTTTA
TCGCGGCCGTGGCTCACATCTACAGCTTCCCGCACCATCCGTTTCACATC
AACTCGCCGCAGTACTGGAACAACCCGAACCATAGCTGGTGTCGCGCCTT
CCTCTCCATGATGGACATATCCGACATGCAGGAGGATGTCACCGAGCATC
TGGGCGTCGTGGGCAGTTCACTGAGTCGTCGCTTCCAGGGACGCAGCACA
TACCAGCCGCTGGCGCGCAGTCCTCGCCGCTCCAGCAGTGAGTCCGAGTA
TCTGATCAGCAAGCGGCAAGATCAGCAGCTGCCGGGCAACTCGTCACAAT
CAGCAGGCGTGGCCGACGATGGGAACAGTAGCAATAGCAACTACCAACAA
CAACAACTACACTTGCCGGGAGCGGCAGGCTCTCAGCCGTCGACCCGTCA
ACGCGACACACTGCATCTTCGCGAGCGCGAAAGGGATCCGGGTGCGGGTG
CTGGCGGCGGTGGCAGTTTCCTGCGCCTGCCCCCTGGTGCCGCGTCGGCA
GCGGCGCCAATTCCCGAGTCCAACGATGATTATGCCCTGCTGTTGGGTGC
GGGCGCAGGCAGGTGACACCGCTACCAACAATATCACTACCAGCAACATC
AGCACCCGCACATTGACGACGCTTTCGAGGACGAAGATGGCGTGGACGTG
AGCCAGCAGTTGAATGCCTCGTCACTCAGCGCCTCGCTATCCGTATCGTT
TGGCATGTCAAGCAGCCTCAAGTTTAGTGCCACTGGCAGCAATCAGTCGG
CGTCCGAGTGGTCGAACTCAACGGGCGGGGATAATGACGCTGACGACGGT
GACTTGGACGTGGACGGAGAGGATGGAGACGCTGAAGATGACGGTGCTGG
TGTGCAACCCGTGGTCTTTATTGCCTCCACGACGCGGCGACGCCGCGATC
GAGAGTACATCACCTAGACGCGCTGACCTTAAAGCCCCTTATCAGTTATA
TGCTATGCTTATATTTATTGTTTTTCCCCATCCCATATCTTGATTTGTGC
TAGGCTTAGAATACTCATGAAACGAACACTTTCTAGCGGCCCATCAAATG
GGGCATTTGAATTGTGGCCTTAGTTTTCATAGCGAAAGCAACTTATTTTA
GATCGCCATTCACTGTAATCGCTGCTCCTGATAGCGCGCACAAGTGAATC
CACACATCCCTTAGCATCCCAAAGAATCATCATTGAATATAGGGGTCAGA
TATTTTGTAAGTACTTTTTATGTGCTGATTGTTTGTGAACAGACCTTCCC
GAAACGATATTTTTACTCTATACATCCCTGCTAGGTGACCCCGCATAGTT
ATGTAGGTCTCCAACTTTTTGTGTGGCGAAGTAGTTAATTAAAAAAAAAC
ATGCCTGAACCGATTGTGAATTTTGTGACTGCCGCCGGTCAGAAAAGGGC
GTGACTTGTATTTAAATAGAAATTCTTATTGTAAAACTAATATACACATC
AATAATATAATATTGGAAAATAAAAAAAAAAAAAAAAAAAAA

LD32366.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:30:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5850-RA 3158 CG5850-RA 249..2971 1..2723 13615 100 Plus
CG5850.a 3155 CG5850.a 249..2968 1..2723 13545 99.8 Plus
CG5850.c 2693 CG5850.c 38..1524 1..1487 7435 100 Plus
CG5850.c 2693 CG5850.c 1525..2693 1554..2722 5845 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:42:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9959381..9960550 2721..1552 5850 100 Minus
chr2L 23010047 chr2L 9962024..9962663 640..1 3200 100 Minus
chr2L 23010047 chr2L 9960660..9960993 1553..1220 1625 99.1 Minus
chr2L 23010047 chr2L 9961666..9961944 918..640 1380 99.6 Minus
chr2L 23010047 chr2L 9961402..9961608 1125..919 1035 100 Minus
chr2L 23010047 chr2L 9961249..9961345 1222..1126 470 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:26:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9960448..9961619 2723..1552 5860 100 Minus
2L 23513712 2L 9963093..9963732 640..1 3200 100 Minus
2L 23513712 2L 9961729..9962062 1553..1220 1670 100 Minus
2L 23513712 2L 9962735..9963013 918..640 1395 100 Minus
2L 23513712 2L 9962471..9962677 1125..919 1035 100 Minus
2L 23513712 2L 9962318..9962414 1222..1126 485 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9960448..9961619 2723..1552 5860 100 Minus
2L 23513712 2L 9963093..9963732 640..1 3200 100 Minus
2L 23513712 2L 9961729..9962062 1553..1220 1670 100 Minus
2L 23513712 2L 9962735..9963013 918..640 1395 100 Minus
2L 23513712 2L 9962471..9962677 1125..919 1035 100 Minus
2L 23513712 2L 9962318..9962414 1222..1126 485 100 Minus
Blast to na_te.dros performed on 2019-03-15 13:42:23 has no hits.

LD32366.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:43:35 Download gff for LD32366.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9959381..9960548 1554..2721 100 <- Minus
chr2L 9960660..9960990 1223..1553 99 <- Minus
chr2L 9961249..9961345 1126..1222 98 <- Minus
chr2L 9961402..9961608 919..1125 100 <- Minus
chr2L 9961666..9961943 641..918 99 <- Minus
chr2L 9962024..9962663 1..640 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:13:56 Download gff for LD32366.complete
Subject Subject Range Query Range Percent Splice Strand
CG5850-RA 1..1476 341..1816 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:19:09 Download gff for LD32366.complete
Subject Subject Range Query Range Percent Splice Strand
CG5850-RA 1..1476 341..1816 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:09:41 Download gff for LD32366.complete
Subject Subject Range Query Range Percent Splice Strand
CG5850-RG 1..1827 341..2167 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:50:46 Download gff for LD32366.complete
Subject Subject Range Query Range Percent Splice Strand
CG5850-RA 1..1476 341..1816 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:38:18 Download gff for LD32366.complete
Subject Subject Range Query Range Percent Splice Strand
CG5850-RG 1..1827 341..2167 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:14:47 Download gff for LD32366.complete
Subject Subject Range Query Range Percent Splice Strand
CG5850-RA 38..2758 1..2721 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:19:09 Download gff for LD32366.complete
Subject Subject Range Query Range Percent Splice Strand
CG5850-RA 36..2756 1..2721 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:09:41 Download gff for LD32366.complete
Subject Subject Range Query Range Percent Splice Strand
CG5850-RA 24..2744 1..2721 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:50:46 Download gff for LD32366.complete
Subject Subject Range Query Range Percent Splice Strand
CG5850-RA 38..2758 1..2721 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:38:18 Download gff for LD32366.complete
Subject Subject Range Query Range Percent Splice Strand
CG5850-RA 24..2744 1..2721 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:43:35 Download gff for LD32366.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9960450..9961617 1554..2721 100 <- Minus
2L 9961729..9962059 1223..1553 100 <- Minus
2L 9962318..9962414 1126..1222 100 <- Minus
2L 9962471..9962677 919..1125 100 <- Minus
2L 9962735..9963012 641..918 100 <- Minus
2L 9963093..9963732 1..640 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:43:35 Download gff for LD32366.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9960450..9961617 1554..2721 100 <- Minus
2L 9961729..9962059 1223..1553 100 <- Minus
2L 9962318..9962414 1126..1222 100 <- Minus
2L 9962471..9962677 919..1125 100 <- Minus
2L 9962735..9963012 641..918 100 <- Minus
2L 9963093..9963732 1..640 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:43:35 Download gff for LD32366.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9960450..9961617 1554..2721 100 <- Minus
2L 9961729..9962059 1223..1553 100 <- Minus
2L 9962318..9962414 1126..1222 100 <- Minus
2L 9962471..9962677 919..1125 100 <- Minus
2L 9962735..9963012 641..918 100 <- Minus
2L 9963093..9963732 1..640 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:09:41 Download gff for LD32366.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9960450..9961617 1554..2721 100 <- Minus
arm_2L 9961729..9962059 1223..1553 100 <- Minus
arm_2L 9962318..9962414 1126..1222 100 <- Minus
arm_2L 9962471..9962677 919..1125 100 <- Minus
arm_2L 9962735..9963012 641..918 100 <- Minus
arm_2L 9963093..9963732 1..640 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:29:05 Download gff for LD32366.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9961729..9962059 1223..1553 100 <- Minus
2L 9962318..9962414 1126..1222 100 <- Minus
2L 9962735..9963012 641..918 100 <- Minus
2L 9960450..9961617 1554..2721 100 <- Minus
2L 9962471..9962677 919..1125 100 <- Minus
2L 9963093..9963732 1..640 100   Minus

LD32366.pep Sequence

Translation from 340 to 1815

> LD32366.pep
MCSLDVRRFFEEWRIWIRPLLIITYVIFAIIVVPLLIVNSVKDGFQRNDQ
LILIGGLFVLSAVPVSIWHIIQHVIHFTKPILQKHIIRILWMVPIYALNA
WIGLFFPKHSIYVDSLRECYEAYVIYNFMVYLLNYLNLGMDLEATMEYKP
QVPHFFPLCCMRPWVMGREFIHNCKHGILQYTVVRPITTFISVICELCGV
YGEGEFAGNVAFPYIVVVNNISQFVAMYCLVLFYRANKEDLKPMKPIPKF
LCIKAVVFFSFFQGVLLNVLVYYNIIKDIFGSDVGDTNLASLLQNFLICI
EMFIAAVAHIYSFPHHPFHINSPQYWNNPNHSWCRAFLSMMDISDMQEDV
TEHLGVVGSSLSRRFQGRSTYQPLARSPRRSSSESEYLISKRQDQQLPGN
SSQSAGVADDGNSSNSNYQQQQLHLPGAAGSQPSTRQRDTLHLRERERDP
GAGAGGGGSFLRLPPGAASAAAPIPESNDDYALLLGAGAGR*

LD32366.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14144-PA 563 GF14144-PA 1..486 1..490 2314 93.5 Plus
Dana\GF10420-PA 406 GF10420-PA 54..344 34..318 418 36.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23987-PA 493 GG23987-PA 1..493 1..491 2601 99 Plus
Dere\GG14801-PA 403 GG14801-PA 47..341 33..318 421 35.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10663-PA 535 GH10663-PA 1..534 1..488 2146 79.1 Plus
Dgri\GH14506-PA 407 GH14506-PA 48..345 29..318 426 35.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5850-PG 608 CG5850-PG 1..491 1..491 2607 100 Plus
CG5850-PD 491 CG5850-PD 1..491 1..491 2607 100 Plus
CG5850-PA 491 CG5850-PA 1..491 1..491 2607 100 Plus
CG5850-PC 490 CG5850-PC 1..490 1..491 2591 99.8 Plus
CG5850-PF 469 CG5850-PF 1..469 1..491 2463 95.3 Plus
CG5850-PE 468 CG5850-PE 1..468 1..491 2459 95.3 Plus
CG12004-PB 403 CG12004-PB 48..341 34..318 449 35.7 Plus
CG12004-PA 403 CG12004-PA 48..341 34..318 449 35.7 Plus
CG12004-PD 486 CG12004-PD 48..341 34..318 449 35.7 Plus
CG12004-PC 486 CG12004-PC 48..341 34..318 449 35.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10963-PA 371 GI10963-PA 28..370 190..488 1170 71.2 Plus
Dmoj\GI13282-PA 410 GI13282-PA 56..348 34..318 423 35.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19192-PA 573 GL19192-PA 1..499 1..490 2326 89.6 Plus
Dper\GL17141-PA 408 GL17141-PA 53..346 34..318 414 35.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19178-PA 553 GA19178-PA 1..499 1..490 2319 89.6 Plus
Dpse\GA11327-PA 408 GA11327-PA 53..346 34..318 414 35.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:08:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12071-PA 491 GM12071-PA 1..491 1..491 2610 99.2 Plus
Dsec\GM14424-PA 403 GM14424-PA 47..341 33..318 421 35.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22317-PA 534 GD22317-PA 1..534 1..491 2503 89.9 Plus
Dsim\GD13627-PA 403 GD13627-PA 47..341 33..318 421 35.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18301-PA 493 GJ18301-PA 1..492 1..488 2208 87.1 Plus
Dvir\GJ12049-PA 411 GJ12049-PA 57..349 34..318 426 35.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14536-PA 575 GK14536-PA 1..491 1..489 2143 81.3 Plus
Dwil\GK12428-PA 324 GK12428-PA 1..244 302..489 602 58.1 Plus
Dwil\GK12568-PA 406 GK12568-PA 48..344 31..318 423 36.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10093-PA 491 GE10093-PA 1..491 1..491 2607 99 Plus
Dyak\GE21163-PA 403 GE21163-PA 47..341 33..318 421 35.6 Plus

LD32366.hyp Sequence

Translation from 340 to 1815

> LD32366.hyp
MCSLDVRRFFEEWRIWIRPLLIITYVIFAIIVVPLLIVNSVKDGFQRNDQ
LILIGGLFVLSAVPVSIWHIIQHVIHFTKPILQKHIIRILWMVPIYALNA
WIGLFFPKHSIYVDSLRECYEAYVIYNFMVYLLNYLNLGMDLEATMEYKP
QVPHFFPLCCMRPWVMGREFIHNCKHGILQYTVVRPITTFISVICELCGV
YGEGEFAGNVAFPYIVVVNNISQFVAMYCLVLFYRANKEDLKPMKPIPKF
LCIKAVVFFSFFQGVLLNVLVYYNIIKDIFGSDVGDTNLASLLQNFLICI
EMFIAAVAHIYSFPHHPFHINSPQYWNNPNHSWCRAFLSMMDISDMQEDV
TEHLGVVGSSLSRRFQGRSTYQPLARSPRRSSSESEYLISKRQDQQLPGN
SSQSAGVADDGNSSNSNYQQQQLHLPGAAGSQPSTRQRDTLHLRERERDP
GAGAGGGGSFLRLPPGAASAAAPIPESNDDYALLLGAGAGR*

LD32366.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5850-PG 608 CG5850-PG 1..491 1..491 2607 100 Plus
CG5850-PD 491 CG5850-PD 1..491 1..491 2607 100 Plus
CG5850-PA 491 CG5850-PA 1..491 1..491 2607 100 Plus
CG5850-PC 490 CG5850-PC 1..490 1..491 2591 99.8 Plus
CG5850-PF 469 CG5850-PF 1..469 1..491 2463 95.3 Plus