Clone LD32407 Report

Search the DGRC for LD32407

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:324
Well:7
Vector:pOT2
Associated Gene/TranscriptCIAPIN1-RA
Protein status:LD32407.pep: gold
Preliminary Size:2316
Sequenced Size:2335

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4180 2001-01-01 Release 2 assignment
CG4180 2001-07-04 Blastp of sequenced clone
CG4180 2003-01-01 Sim4 clustering to Release 3
l(2)35Bg 2008-04-29 Release 5.5 accounting
l(2)35Bg 2008-08-15 Release 5.9 accounting
yellow-c 2008-08-15 Release 5.9 accounting
l(2)35Bg 2008-12-18 5.12 accounting
yellow-c 2008-12-18 5.12 accounting

Clone Sequence Records

LD32407.complete Sequence

2335 bp (2335 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060402

> LD32407.complete
TTCCGTTCGGTGCTTGAACTTTTGAGATATTCTAGAAACACATCCACAAT
GGAGAACTTTAAGGGTCTACAAAAATCCCTATACATATGGACGGACAGCG
CCGACTTGGACAAGCGCGTGGAGCAACTAAAGGCGGCCACTGGCGGCGAT
GTGGCTTTGGAAAATGTGCACCGCCTTTCGTTTTCTTCCTATGCCAACTC
CAGTTTCGACCTGATTGTGATCGAGTGCGCCCAGCTGACCGACAGTTACG
TAAAACTGCTGCACATGCTGAAACCGAGTGGCAAACTGCATTTGGTGTCC
TACATCGGTCCGGCGGCTAGTTTGCTGCAGGAGATCAAGCTATCCGGATT
CATAAACTGTCGCGAGGACTCTCCAGATGCTTTGACCGCCGAGAAGCCTG
GCTACGAGACAGGATCCTCAGCCAGGTTGTCATTCGCAAAGAAGAACGCC
AGTGCAGTCAATGTGTGGAAGATAAGCGGTGACGATGAGGAACTGATCGA
TGAGGAGGAGCTGCTGGACGAGGAAGACAAACAGAAGCCGGATCCGGCTG
GTCTGCGTGTCTGTAGCACCACGGGCAAGCGCAAGGCGTGCAAAAACTGC
TCCTGCGGGCTGGCCGAGGAATTGGAGACTGAAAAACAGAGCCAGAAGGC
CACCGAGAATGCCAAGTCAAGCTGTGGAAATTGTTATCTCGGCGACGCCT
TCCGCTGCTCCACTTGCCCCTATTTGGGCATGCCCGCCTTTAAGCCCGGT
GAGAAGGTGCAACTGGCCGACAACCTCCTGAAATCCGACATTTAACTTAG
GCTCACCATGGTATACCCAATCAATCACATTTCAAATAGTTTATTAAGCT
GACTTACTAACAAACAATAATGTCATAATGTAAATACAAAAATGCACCGC
GTCATAAACACAGCATGTAGATTTAAATATCCAAGTGATCACATTTCGCA
TGGTGTACCCTTGATGAGATCGCGGTTCTGGCCCATCAAAATACGATAGT
TGACGGCCGAGGGATCGAGTTCCTTGTACAAATATGTCGGCATCTTGTCG
GACAGCACCCAAATAGTGCCTTCATTGTCGATTTTCATGTCATTTGGAAA
GACCAGAGTGTGCGAATCGGAATCGATTAGCCCCTGGGTGTCCGGAGTGT
ATGGACGCTTGATGTTCCAACAAGCAATGGCGTCTTTGTTCACCTGCGTA
TAGAAGATGACGCCGGTCTCGGGGTCAAAGACCTCGGCGGTGGACTGGCC
ATTCATGCCACGGTCACCAACGTATTTAAAATCGTAATACGAATCGCCAG
CGGTCACGTGTGATTCGTTTTGCAGCACGCGGTTCGAAACCTTGAACTCC
TTGGTACTGGCCAGGGCATGGAAATAAATGTCCTTGGAGTGATCTGGATT
CATTGGGCCCACGGCCAGCCCAAAAACGCCATCCGTCCACTGGAAGTTCA
CGCCGCCCACATTGAAATCACCATGCAGAGGATCGAAGTGGAAGAAGTTG
TGCTTGACGCGGTAGGATTTGTCGTTCCTCAGGGAGTACACAATCACACC
GTAGGCACCCAAATCCGGAATGTAAGCAAAGGCATCTTGGCACTCCGAGC
GGTCCGCATCCACAACCTAAATATTGATTAATTCGATCAGTTTGGAATTT
AAATAATACGCCTATGCATACTCACAATATTCGCAAAGAACGAGTCCTCT
TTGGTCTGATCAGCGGGAATGGTGAAACGGCGCAGTAAAGTATCTGTTTT
CAAGTCGAAAACCAGGATTGAATTGGGCGTAATCTGCTTGGGACTGCCCA
GGATGTCGGCCAAGCCAGTATCGAGCACCCACAGGCGATCGCATACGTCG
ACTTGAATTCGGAAGGTGGAAATGACAGTGGAGTTGTCCTTCAGCTGGAT
GCCGGCATCTTGAGCCTTGTCCGCGTCCAGACGTCCACCGGATGGTGTCT
TTTGGTCCTGTGGCTGCACATCGATGGGCAGCTTGTTGGCCTCCCAACTG
GGATACGGATGCAGCTTTGGCGACTTCTCCGTCGAATTAATGTCGATGTA
GTTGAGTGTGGCAGCAACACCAGCCTTCCATCTAAAGGACTTGTTTAGTT
ACTAATTACATTTAAACCTGACACTGGCAAGTAACAAATTAATAACATTA
AAAAGTACCATTCACCTGCGCAATTATTATGACTGATTGGATATAGTCTA
ATATAAGCTATAGTTTTAATTTATATCTTAGCACTATCAGTTAAAACTTT
GACGGCAACTATAGCTTAAATAATTATGCTGTATTATCAACAAAATATAC
TTTTTTTACGTATCTTAAAAAAAAAAAAAAAAAAA

LD32407.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:30:47
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)35Bg-RA 2508 l(2)35Bg-RA 153..2473 1..2317 11520 99.8 Plus
l(2)35Bg.a 2382 l(2)35Bg.a 266..2382 204..2316 10500 99.8 Plus
yellow-c-RA 1654 yellow-c-RA 820..1654 1616..782 4175 100 Minus
yellow-c-RA 1654 yellow-c-RA 412..821 2083..1674 2050 100 Minus
l(2)35Bg.a 2382 l(2)35Bg.a 35..218 1..184 920 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 15035371..15036777 2088..682 7035 100 Minus
chr2L 23010047 chr2L 15036846..15037342 681..185 2485 100 Minus
chr2L 23010047 chr2L 15035085..15035313 2316..2088 1115 99.1 Minus
chr2L 23010047 chr2L 15037432..15037615 184..1 920 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:26:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15036579..15037985 2088..682 7035 100 Minus
2L 23513712 2L 15038054..15038550 681..185 2485 100 Minus
2L 23513712 2L 15036292..15036521 2317..2088 1150 100 Minus
2L 23513712 2L 15038640..15038823 184..1 920 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15036579..15037985 2088..682 7035 100 Minus
2L 23513712 2L 15038054..15038550 681..185 2485 100 Minus
2L 23513712 2L 15036292..15036521 2317..2088 1150 100 Minus
2L 23513712 2L 15038640..15038823 184..1 920 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:51:03 has no hits.

LD32407.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:51:41 Download gff for LD32407.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 15037432..15037615 1..184 100   Minus
chr2L 15035085..15035312 2089..2316 99 <- Minus
chr2L 15035367..15036777 682..2088 99 <- Minus
chr2L 15036846..15037342 185..681 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:13:58 Download gff for LD32407.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bg-RA 1..747 49..795 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:19:10 Download gff for LD32407.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bg-RA 1..747 49..795 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:34:59 Download gff for LD32407.complete
Subject Subject Range Query Range Percent Splice Strand
CIAPIN1-RA 1..747 49..795 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:50:47 Download gff for LD32407.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bg-RA 1..747 49..795 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:43:59 Download gff for LD32407.complete
Subject Subject Range Query Range Percent Splice Strand
CIAPIN1-RA 1..747 49..795 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:14:48 Download gff for LD32407.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bg-RA 35..2354 1..2316 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:19:10 Download gff for LD32407.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bg-RA 35..2354 1..2316 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:59 Download gff for LD32407.complete
Subject Subject Range Query Range Percent Splice Strand
CIAPIN1-RA 39..2358 1..2316 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:50:47 Download gff for LD32407.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bg-RA 35..2354 1..2316 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:43:59 Download gff for LD32407.complete
Subject Subject Range Query Range Percent Splice Strand
CIAPIN1-RA 39..2358 1..2316 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:41 Download gff for LD32407.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15036293..15036520 2089..2316 100 <- Minus
2L 15036575..15037985 682..2088 99 <- Minus
2L 15038054..15038550 185..681 100 <- Minus
2L 15038640..15038823 1..184 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:41 Download gff for LD32407.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15036293..15036520 2089..2316 100 <- Minus
2L 15036575..15037985 682..2088 99 <- Minus
2L 15038054..15038550 185..681 100 <- Minus
2L 15038640..15038823 1..184 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:41 Download gff for LD32407.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15036293..15036520 2089..2316 100 <- Minus
2L 15036575..15037985 682..2088 99 <- Minus
2L 15038054..15038550 185..681 100 <- Minus
2L 15038640..15038823 1..184 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:59 Download gff for LD32407.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15036293..15036520 2089..2316 100 <- Minus
arm_2L 15036575..15037985 682..2088 99 <- Minus
arm_2L 15038054..15038550 185..681 100 <- Minus
arm_2L 15038640..15038823 1..184 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:29:07 Download gff for LD32407.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15036293..15036520 2089..2316 100 <- Minus
2L 15036575..15037985 682..2088 99 <- Minus
2L 15038054..15038550 185..681 100 <- Minus
2L 15038640..15038823 1..184 100   Minus

LD32407.hyp Sequence

Translation from 0 to 794

> LD32407.hyp
FRSVLELLRYSRNTSTMENFKGLQKSLYIWTDSADLDKRVEQLKAATGGD
VALENVHRLSFSSYANSSFDLIVIECAQLTDSYVKLLHMLKPSGKLHLVS
YIGPAASLLQEIKLSGFINCREDSPDALTAEKPGYETGSSARLSFAKKNA
SAVNVWKISGDDEELIDEEELLDEEDKQKPDPAGLRVCSTTGKRKACKNC
SCGLAEELETEKQSQKATENAKSSCGNCYLGDAFRCSTCPYLGMPAFKPG
EKVQLADNLLKSDI*

LD32407.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:15:08
Subject Length Description Subject Range Query Range Score Percent Strand
CIAPIN1-PA 248 CG4180-PA 1..248 17..264 1288 100 Plus

LD32407.pep Sequence

Translation from 48 to 794

> LD32407.pep
MENFKGLQKSLYIWTDSADLDKRVEQLKAATGGDVALENVHRLSFSSYAN
SSFDLIVIECAQLTDSYVKLLHMLKPSGKLHLVSYIGPAASLLQEIKLSG
FINCREDSPDALTAEKPGYETGSSARLSFAKKNASAVNVWKISGDDEELI
DEEELLDEEDKQKPDPAGLRVCSTTGKRKACKNCSCGLAEELETEKQSQK
ATENAKSSCGNCYLGDAFRCSTCPYLGMPAFKPGEKVQLADNLLKSDI*

LD32407.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14996-PA 248 GF14996-PA 1..248 1..248 1141 92.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24227-PA 248 GG24227-PA 1..248 1..248 1296 98.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10820-PA 249 GH10820-PA 1..249 1..248 1045 85.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
CIAPIN1-PA 248 CG4180-PA 1..248 1..248 1288 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:09:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17332-PA 248 GI17332-PA 1..248 1..248 1071 89.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25729-PA 247 GL25729-PA 1..247 1..248 1115 91.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18008-PA 247 GA18008-PA 1..247 1..248 1115 91.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:09:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14566-PA 248 GM14566-PA 1..248 1..248 1294 98.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:09:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21974-PA 248 GD21974-PA 1..248 1..248 1302 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15996-PA 248 GJ15996-PA 1..248 1..248 1089 90.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18068-PA 253 GK18068-PA 1..253 1..248 1024 85.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19419-PA 248 GE19419-PA 1..248 1..248 1284 97.6 Plus