Clone LD32410 Report

Search the DGRC for LD32410

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:324
Well:10
Vector:pOT2
Associated Gene/TranscriptSaf6-RA
Protein status:LD32410.pep: gold
Preliminary Size:3071
Sequenced Size:2438

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3883 2001-01-01 Release 2 assignment
CG3883 2001-11-29 Blastp of sequenced clone
CG3883 2003-01-01 Sim4 clustering to Release 3
CG3883 2008-04-29 Release 5.5 accounting
CG3883 2008-08-15 Release 5.9 accounting
CG3883 2008-12-18 5.12 accounting

Clone Sequence Records

LD32410.complete Sequence

2438 bp (2438 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069583

> LD32410.complete
CAAGATTTGTTTATTTTGTGGTGCAGCTTCGTTGTTTATTTACCAACTGT
TGAAAATATATACATTTATGAATTATACAAAACCAAGAAGATGAAAACCT
CTGGCGCCAGCAATACTGACGAGCTGAACAAGTCATCGCACAGCAAAGTC
AGCAAAAAGTCCACTAAGTCGCGATCTAAGTCGGCGAAATTGGAGTTGAC
TGGAAAGAATTCCCTGTCGGCATCCGCATCATCCTCCATCGCATCCGCAG
TGAGCGGGGGCGTTGCAGTGGGCAGCCTGCCGGCCACGCCCACTCACCTA
AACATGGTGACAACGCCCACCACGCCAACATCTAGTCTGGGTAACTACAA
TCTGTTTGACGCCTCATTTGCGGTAGCAGGAAGTGGTGGGCACGGACTTG
CAGGCGGCATCGCGGGCGCAGAAGCCTCTGGCAACTCCAGTCGAATGGGT
CATCAGAAGAGCTATGCTGGTTTCGATCCGCGCAGCATCAAGATCTTTTG
GGAGCAGCACGACCAGACCGATGTGGAACTCTCCCAGGATGTGTGCGCCC
GTTTGGCGGAAGATGCCTCCTACAAAGTCTGGGAGCTGATCAATAATGTC
AAAATATACTCGCGCCACTCGGGCGGAGTGGTGACATACGACCTGGTGAA
CGAAGTGCTAAAAGATGCCGATGTGCCGCCTATGCTGGGTGCGATGGACA
GCGACTGGGACCGGATCGACTATGACGGCAGTTTTTACTTTCACTCGGAT
AAGATCTTCGAGCTGAGCGCGGAGTTTCAGAAGGAAGTCAATCTGTGCAC
ACCTGATGATGCAGACTTTCAGAGCATCTGCCCAGTGGAGGATAAGCACA
TGGACCAACTAAGACAGTGTGTCCAGAGTCTTGTGACGGCAGCCCTTTTT
GCGGACAGCAAATCCCAGACGGCCGCCGTCTGCCATGCTTTTCAGACACC
CCTGATGGGATCTATCTACCGAGTGATTGTGAGTAAGATGGTCCAGTTGC
TAGCCTTTAAGCAGCAGGACCATTTGAGCCAGCGATGCTGGCGACTGCTC
CGAGCATGCAACTACAACGCCACTGCTAATCACAATGCCTGCCGGCCGGA
GTACTTCAACCTGGCCGAGGTACTGGTCAGCCAGCTAATGGCACCTTACG
AAACTATCAAAGCTCCACACGTCGACCCAGATCCGGGACAAACCACCTCC
ATCAAAATGGAGTTTGAAGAAGAACTAAAGGTTGAGCCAGACCAGTGCCA
TAATCCGGAAACCCAGGAAAATCCGGAGGTCATGGGAGTAGAGAAACAGG
AGCAAGAACCCCAGATGTTTCCGGGTGAGAGCACCATGGAACACACAATC
TACAAGCTGCAATCGGAGGAGGAGGAATTGAATCCTCAGCCGGAGGCGGA
ACACCTATCCAGCTACTTTGCCTGTCCAGTCGGCAATGGCCTGGTGGACG
AGCTGTGTGAAACTATAGGACAGCTGGCATCTCAAAGTGGTTACCTACAT
GCAGAGTGCCTGTTTTTGATCAAGAGACGCCTAGCGAGATTCTTCGAAGG
TCGCCACGTCAGCAGTGAGAGAGACTTTAGGTATATCAGTAGAGCAGTGC
GCGGTCTCATTGCCCTGGGAGAATATGCCTTTCGTGAGTTTATTCCCTAC
ATCTACAAACTGCGCGTCGAGGAAATCCCGGATAGCCTGTGGCCGGATCT
GGCTCCGGCTGCCATCTTCCTTGGCGGTCATGATGACGTATACCTGTATG
AATGGCTGGAGTACGGATGCGGTGCTGCTCTGCAGCCCTTCTTGGTCCAC
TATGCGCGAGCCTACGAAAAGATGGTAACCAGACGGTATGTGAAGGCCAA
ACAACCCGCTTACAGAATAGAATCAGTGCCGGGAGTGCGTCGGTTGGAAT
GGAGTACTCTTGCGGCAGCCATGTGCCACGGAGACGATCCTAGCAAGGCA
CTCAAACCGAAGCCTACGCTCTGCGAGGCTTTCCCCGACCTTCAGTCACC
AAATCTTCAGCTCAACTGCGCGGGCAACATCCGCTTTAAGTTTGCAGGAT
GCCGCCCGGTGCTGCTGAAGCCGAAGGTTGCGACTGTTCCCCACTCCGAA
GACTCGCCTTCGTCGGCAGCGAACGGTGGTGGGGGTGGCGGTGCCAGCTC
CGACATCCTGATCGCCAAACGAAAACTCTTTAAGCCCCTGACCAACGTGA
GAAAGTGGTCGCCCATCAGTGGCTATCACTACCTAAGGATCTGAAAGGGA
CTTGGGAAAGTATTATAAGACCTTCTGGAGGTCCAGGAGGACCTGGGGAT
CTCAATAAAACTCTTCGTTTACTTTAGACTTCCTCTTCGGTCTTCCGAAA
GGTGATACAACTTTACTCGTAATACATAAAAACACAGAAAAAAAAAAAAA
AAATAAAACAAAGAAAAAACAAAAAAAAAAAAAAAAAA

LD32410.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3883-RA 2492 CG3883-RA 44..2432 1..2389 11945 100 Plus
CG3883.a 2470 CG3883.a 477..2410 456..2389 9670 100 Plus
CG3883.a 2470 CG3883.a 31..477 1..447 2235 100 Plus
KH1-RA 1887 KH1-RA 1747..1887 2389..2249 705 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 814119..815097 1573..595 4760 99.1 Minus
chr2L 23010047 chr2L 813188..813769 2389..1808 2850 99.3 Minus
chr2L 23010047 chr2L 815345..815792 448..1 2225 99.8 Minus
chr2L 23010047 chr2L 813826..814062 1808..1572 1170 99.6 Minus
chr2L 23010047 chr2L 815146..815293 594..447 740 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:26:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 814243..815221 1573..595 4895 100 Minus
2L 23513712 2L 813312..813893 2389..1808 2910 100 Minus
2L 23513712 2L 815474..815921 448..1 2240 100 Minus
2L 23513712 2L 813950..814186 1808..1572 1185 100 Minus
2L 23513712 2L 815275..815422 594..447 740 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 814243..815221 1573..595 4895 100 Minus
2L 23513712 2L 813312..813893 2389..1808 2910 100 Minus
2L 23513712 2L 815474..815921 448..1 2240 100 Minus
2L 23513712 2L 813950..814186 1808..1572 1185 100 Minus
2L 23513712 2L 815275..815422 594..447 740 100 Minus
Blast to na_te.dros performed on 2019-03-15 18:28:51 has no hits.

LD32410.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:29:45 Download gff for LD32410.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 815146..815292 448..594 100 <- Minus
chr2L 813190..813769 1808..2387 99 <- Minus
chr2L 813827..814060 1574..1807 99 <- Minus
chr2L 814119..815097 595..1573 99 <- Minus
chr2L 815346..815792 1..447 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:13:59 Download gff for LD32410.complete
Subject Subject Range Query Range Percent Splice Strand
CG3883-RA 1..2154 91..2244 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:19:55 Download gff for LD32410.complete
Subject Subject Range Query Range Percent Splice Strand
Saf6-RA 1..2154 91..2244 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:06:04 Download gff for LD32410.complete
Subject Subject Range Query Range Percent Splice Strand
Saf6-RA 1..2154 91..2244 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:46:08 Download gff for LD32410.complete
Subject Subject Range Query Range Percent Splice Strand
CG3883-RA 1..2154 91..2244 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:05:06 Download gff for LD32410.complete
Subject Subject Range Query Range Percent Splice Strand
Saf6-RA 1..2154 91..2244 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:53:31 Download gff for LD32410.complete
Subject Subject Range Query Range Percent Splice Strand
CG3883-RA 31..2417 1..2387 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:19:55 Download gff for LD32410.complete
Subject Subject Range Query Range Percent Splice Strand
Saf6-RA 31..2417 1..2387 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:06:04 Download gff for LD32410.complete
Subject Subject Range Query Range Percent Splice Strand
Saf6-RA 30..2416 1..2387 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:46:08 Download gff for LD32410.complete
Subject Subject Range Query Range Percent Splice Strand
CG3883-RA 31..2417 1..2387 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:05:06 Download gff for LD32410.complete
Subject Subject Range Query Range Percent Splice Strand
Saf6-RA 30..2416 1..2387 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:29:45 Download gff for LD32410.complete
Subject Subject Range Query Range Percent Splice Strand
2L 813314..813893 1808..2387 100 <- Minus
2L 813951..814184 1574..1807 100 <- Minus
2L 814243..815221 595..1573 100 <- Minus
2L 815275..815421 448..594 100 <- Minus
2L 815475..815921 1..447 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:29:45 Download gff for LD32410.complete
Subject Subject Range Query Range Percent Splice Strand
2L 813314..813893 1808..2387 100 <- Minus
2L 813951..814184 1574..1807 100 <- Minus
2L 814243..815221 595..1573 100 <- Minus
2L 815275..815421 448..594 100 <- Minus
2L 815475..815921 1..447 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:29:45 Download gff for LD32410.complete
Subject Subject Range Query Range Percent Splice Strand
2L 813314..813893 1808..2387 100 <- Minus
2L 813951..814184 1574..1807 100 <- Minus
2L 814243..815221 595..1573 100 <- Minus
2L 815275..815421 448..594 100 <- Minus
2L 815475..815921 1..447 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:06:04 Download gff for LD32410.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 813314..813893 1808..2387 100 <- Minus
arm_2L 813951..814184 1574..1807 100 <- Minus
arm_2L 814243..815221 595..1573 100 <- Minus
arm_2L 815275..815421 448..594 100 <- Minus
arm_2L 815475..815921 1..447 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:22:31 Download gff for LD32410.complete
Subject Subject Range Query Range Percent Splice Strand
2L 813314..813893 1808..2387 100 <- Minus
2L 813951..814184 1574..1807 100 <- Minus
2L 814243..815221 595..1573 100 <- Minus
2L 815275..815421 448..594 100 <- Minus
2L 815475..815921 1..447 100   Minus

LD32410.hyp Sequence

Translation from 0 to 2243

> LD32410.hyp
QDLFILWCSFVVYLPTVENIYIYELYKTKKMKTSGASNTDELNKSSHSKV
SKKSTKSRSKSAKLELTGKNSLSASASSSIASAVSGGVAVGSLPATPTHL
NMVTTPTTPTSSLGNYNLFDASFAVAGSGGHGLAGGIAGAEASGNSSRMG
HQKSYAGFDPRSIKIFWEQHDQTDVELSQDVCARLAEDASYKVWELINNV
KIYSRHSGGVVTYDLVNEVLKDADVPPMLGAMDSDWDRIDYDGSFYFHSD
KIFELSAEFQKEVNLCTPDDADFQSICPVEDKHMDQLRQCVQSLVTAALF
ADSKSQTAAVCHAFQTPLMGSIYRVIVSKMVQLLAFKQQDHLSQRCWRLL
RACNYNATANHNACRPEYFNLAEVLVSQLMAPYETIKAPHVDPDPGQTTS
IKMEFEEELKVEPDQCHNPETQENPEVMGVEKQEQEPQMFPGESTMEHTI
YKLQSEEEELNPQPEAEHLSSYFACPVGNGLVDELCETIGQLASQSGYLH
AECLFLIKRRLARFFEGRHVSSERDFRYISRAVRGLIALGEYAFREFIPY
IYKLRVEEIPDSLWPDLAPAAIFLGGHDDVYLYEWLEYGCGAALQPFLVH
YARAYEKMVTRRYVKAKQPAYRIESVPGVRRLEWSTLAAAMCHGDDPSKA
LKPKPTLCEAFPDLQSPNLQLNCAGNIRFKFAGCRPVLLKPKVATVPHSE
DSPSSAANGGGGGGASSDILIAKRKLFKPLTNVRKWSPISGYHYLRI*

LD32410.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
Saf6-PA 717 CG3883-PA 1..717 31..747 3771 100 Plus
Saf6-PB 714 CG3883-PB 1..714 31..747 3738 99.6 Plus

LD32410.pep Sequence

Translation from 90 to 2243

> LD32410.pep
MKTSGASNTDELNKSSHSKVSKKSTKSRSKSAKLELTGKNSLSASASSSI
ASAVSGGVAVGSLPATPTHLNMVTTPTTPTSSLGNYNLFDASFAVAGSGG
HGLAGGIAGAEASGNSSRMGHQKSYAGFDPRSIKIFWEQHDQTDVELSQD
VCARLAEDASYKVWELINNVKIYSRHSGGVVTYDLVNEVLKDADVPPMLG
AMDSDWDRIDYDGSFYFHSDKIFELSAEFQKEVNLCTPDDADFQSICPVE
DKHMDQLRQCVQSLVTAALFADSKSQTAAVCHAFQTPLMGSIYRVIVSKM
VQLLAFKQQDHLSQRCWRLLRACNYNATANHNACRPEYFNLAEVLVSQLM
APYETIKAPHVDPDPGQTTSIKMEFEEELKVEPDQCHNPETQENPEVMGV
EKQEQEPQMFPGESTMEHTIYKLQSEEEELNPQPEAEHLSSYFACPVGNG
LVDELCETIGQLASQSGYLHAECLFLIKRRLARFFEGRHVSSERDFRYIS
RAVRGLIALGEYAFREFIPYIYKLRVEEIPDSLWPDLAPAAIFLGGHDDV
YLYEWLEYGCGAALQPFLVHYARAYEKMVTRRYVKAKQPAYRIESVPGVR
RLEWSTLAAAMCHGDDPSKALKPKPTLCEAFPDLQSPNLQLNCAGNIRFK
FAGCRPVLLKPKVATVPHSEDSPSSAANGGGGGGASSDILIAKRKLFKPL
TNVRKWSPISGYHYLRI*

LD32410.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14825-PA 708 GF14825-PA 45..708 54..717 2616 74.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:22:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24629-PA 717 GG24629-PA 1..717 1..717 3291 94.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:22:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10497-PA 702 GH10497-PA 1..702 1..717 2354 65.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
Saf6-PA 717 CG3883-PA 1..717 1..717 3771 100 Plus
Saf6-PB 714 CG3883-PB 1..714 1..717 3738 99.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18014-PA 718 GI18014-PA 1..718 1..717 2507 66.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18634-PA 704 GL18634-PA 29..704 37..717 2493 73 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17749-PA 712 GA17749-PA 1..712 1..717 2556 73.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16645-PA 717 GM16645-PA 1..717 1..717 3763 96.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22941-PA 717 GD22941-PA 1..717 1..717 3793 97.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19648-PA 733 GJ19648-PA 1..733 1..717 2409 66.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24415-PA 703 GK24415-PA 1..703 1..717 2127 58.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15931-PA 717 GE15931-PA 1..717 1..717 3354 95.7 Plus