![]() | BDGP Sequence Production Resources |
Search the DGRC for LD32539
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 325 |
Well: | 39 |
Vector: | pOT2 |
Associated Gene/Transcript | dm-RA |
Protein status: | LD32539.pep: gold |
Preliminary Size: | 3355 |
Sequenced Size: | 3472 |
Gene | Date | Evidence |
---|---|---|
CG10798 | 2001-09-19 | Blastp of sequenced clone |
CG10798 | 2003-01-01 | Sim4 clustering to Release 3 |
dm | 2008-04-29 | Release 5.5 accounting |
dm | 2008-08-15 | Release 5.9 accounting |
dm | 2008-12-18 | 5.12 accounting |
3472 bp (3472 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058627
> LD32539.complete CGTGTTCAGTTCACCGCGGGTAATTCAGAGAATCGCTTTGTGGATTGGAT TTTTGCCTGTTTTCCGCCCGATACAAAAAAAAAAAACCAAACGCTATATA AATAGTTCTGTAGTAAAACCTGAAGCAACACGTTTTAAAATATACAACTA CTACTAACAACTGTCACAGCCAAGTTACAAAAGTGCTAAATCCCAGAAAT AACCTAAGAGCCGACTTAAAACCGCGCAAATACATAAAAAAAAATCTTCT CCAAAGCAGAAACAAAAACTTGTGAAAAACTAGAATTAAAAAAAGATTTT TTAAAAAAAATCAGCTAGTGCAAAATAAACGGGAAGAATTTTTTTTTGTG TCCCTTTTTTTGGTGTTTTTTCTCCGTCTTTCCCCTTCTTTGACGCAAAA AAAAAAGTGCCCAACTTGCTGGCGGCACGGGAACGGGATAGAAATAGATA TAGCCGAAAGCGACTGGAAAGCAAAGGAAGCTAACTAAATTGGATTACAA TCAATTAAATAGAGACGGATACGGAAACTATGTTCAGCGAGACAGGCATA TAACTCAGGAACTTAAGATATATAGAAAGAAAAAAAAACCCAGACAACAT AATCGCAATGGCCCTTTACCGCTCTGATCCGTATTCCATAATGGACGACC AACTTTTTTCAAATATTTCAATATTCGATATGGATAATGATCTGTACGAT ATGGACAAACTCCTTTCGTCGTCCACCATTCAGAGTGATCTCGAGAAGAT CGAGGACATGGAAAGTGTATTTCAAGACTATGACTTAGAGGAGGATATGA AGCCAGAGATCCGCAACATCGACTGCATGTGGCCGGCGATGTCCAGCTGT TTGACCAGCGGTAACGGTAATGGAATAGAGAGCGGAAACAGTGCAGCCTC GTCGTACAGCGAAACCGGTGCCGTATCCCTGGCGATGGTTTCCGGCTCTA CGAATCTCTACAGCGCGTATCAACGATCGCAGACGACAGATAACACCCAG TCAAATCAACAGCATGTCGTCAACAGTGCCGAGAACATGCCGGTGATCAT CAAGAAGGAGCTCGCAGATCTGGACTACACGGTCTGTCAGAAGCGCCTCC GTTTGAGCGGCGGTGACAAGAAGTCACAGATCCAGGACGAGGTCCATTTA ATACCGCCCGGCGGAAGTTTGCTCCGCAAGCGGAACAACCAGGACATTAT CCGCAAATCGGGCGAATTGAGCGGCAGCGATAGCATAAAATACCAGAGAC CAGACACACCTCACAGTCTTACCGACGAGGTGGCCGCCTCAGAGTTTAGA CATAACGTCGACTTGCGTGCCTGCGTGATGGGCAGCAATAATATCTCGCT GACCGGCAATGATAGCGATGTCAACTACATTAAGCAAATCAGCAGGGAGC TTCAGAATACCGGCAAGGATCCGTTGCCGGTGCGTTACATCCCGCCGATC AACGATGTCCTCGATGTGCTCAACCAGCATTCCAATTCGACGGGTGGCCA ACAGCAGTTGAACCAACAGCAACTGGACGAGCAACAACAGGCCATCGATA TAGCCACTGGACGCAACACAGTGGATTCTCCGCCGACGACCGGCTCTGAT AGTGACTCCGATGACGGTGAACCCCTCAACTTTGACCTGCGCCATCATCG CACTAGCAAAAGCGGCAGCAATGCCAGCATCACCACCAACAACAACAACA GCAACAACAAAAACAACAAATTGAAGAACAACAGCAACGGCATGCTGCAC ATGATGCACATCACCGATCACAGCTACACGCGCTGCAACGATATGGTGGA CGATGGTCCCAATTTGGAGACCCCCTCAGATTCCGATGAGGAAATCGATG TCGTTTCATATACGGACAAGAAGCTACCCACAAATCCCTCGTGCCACTTG ATGGGCGCCCTACAGTTCCAGATGGCCCATAAGATCTCGATTGATCACAT GAAGCAAAAACCGCGCTACAATAACTTCAATCTGCCGTACACACCGGCCA GCAGCAGTCCAGTGAAATCGGTGGCCAACTCGCGTTATCCATCACCGTCG AGCACACCGTATCAGAACTGCTCCTCCGCTTCGCCGTCCTACTCGCCGCT ATCCGTGGACTCTTCAAATGTCAGCTCGAGCAGCTCCAGTTCCAGTTCGC AGTCAAGCTTCACCACCTCCAGTTCGAACAAGGGACGCAAACGATCCAGT CTGAAGGATCCAGGCTTGTTGATCTCCTCCAGCAGCGTTTATCTGCCGGG AGTCAATAACAAAGTGACGCATAGCTCCATGATGAGCAAAAAGAGTCGTG GCAAGAAGGTGGTTGGCACCTCGTCTGGCAATACATCTCCGATATCGTCT GGCCAGGATGTGGATGCCATGGATCGTAATTGGCAGCGGCGCAGTGGTGG AATTGCCACTAGCACAAGCTCCAACAGCAGTGTCCATCGGAAGGACTTTG TTTTGGGCTTTGATGAGGCCGATACGATCGAGAAGCGCAATCAGCACAAT GATATGGAGCGTCAGCGACGCATTGGACTCAAGAACCTCTTTGAGGCTCT AAAGAAACAGATTCCCACAATTAGGGACAAGGAGCGGGCTCCCAAGGTAA ATATCCTGCGAGAGGCGGCCAAGCTATGCATCCAGCTGACCCAGGAGGAG AAGGAGCTTAGTATGCAGCGCCAGCTTTTGTCGCTGCAGCTGAAGCAACG TCAGGACACTCTGGCCAGTTACCAAATGGAGTTGAACGAATCGCGCTCGG TTAGTGGATAGTGTTGTCTCATACTATCGGCTTAAAGCGGCGGCGTAGGG CTAGGATAACCCCCAATGTATATGCAAGATTTGTATATCCTCCTACTTTT TTTTTTTTGCAATTTACTTTGATTTAGCTTCGATCCTTTCTTGACATTAA GCCCTAAATATGATTTTTTTCTGGAGAACTTCAATATCAGTTAGTAGGTT ATGTTTAACGATTTGCTTGCGCTTTTTCCGCTTTTTTTTTTGTTTTTTTA CCATACCATACCATACCATACAAGGGGTTAGAGTTTACGAGTGATTTAAC AAATTTGATTTCTTCAATGTGATATATATATGATTTTCTTTCCGCGCGAT TTGATTTGGTAGGGAAAGGTTAACGAAAGCGGTTTTATGAAATCAATTTG AAGTGTTTTTTTTTCGCTGCATATATTACAATATACACGTATGGATTAGA TTTAATTAACAATTAGCGGTCTGTATATAACATATGAAGTAGAATATCTT AATTATTTTTTTGAATTAGTTACTTAACCATGAAGTAAACAAAAAGGAAA ACATTTAAAAAACACAAAAAATGAGGACAAAGAACCAAACATTGAAAAGT GAAAGGAATAGTTAGAAATGACAGACCTAGCGGAGAAACGAAACACAAAA AAAAAAAAAAAAGAAACTGAAGGGAAAAACACAAAAGGAGAGAACAAAAA CAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 3278007..3279615 | 1835..3451 | 7740 | 99 | Plus |
chrX | 22417052 | chrX | 3268541..3269849 | 540..1840 | 6300 | 99.1 | Plus |
chrX | 22417052 | chrX | 3266789..3267330 | 1..541 | 2660 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6944 | 1501..1741 | 153 | 57.2 | Plus |
Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 4..173 | 150..334 | 142 | 58.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6961..7064 | 1646..1747 | 137 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..7005 | 1499..1778 | 130 | 54.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 3268543..3269844 | 542..1835 | 99 | -> | Plus |
chrX | 3266789..3267330 | 1..541 | 99 | -> | Plus |
chrX | 3278008..3279615 | 1836..3451 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dm-RA | 1..2154 | 608..2761 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dm-RA | 1..2154 | 608..2761 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dm-RB | 1..2154 | 608..2761 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dm-RA | 1..2154 | 608..2761 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dm-RB | 1..2154 | 608..2761 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dm-RA | 1..3451 | 1..3451 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dm-RA | 1..3451 | 1..3451 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dm-RA | 25..3475 | 1..3451 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dm-RA | 1..3451 | 1..3451 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dm-RA | 25..3475 | 1..3451 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 3373183..3373723 | 1..541 | 100 | -> | Plus |
X | 3374940..3376233 | 542..1835 | 100 | -> | Plus |
X | 3384387..3386002 | 1836..3451 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 3373183..3373723 | 1..541 | 100 | -> | Plus |
X | 3374940..3376233 | 542..1835 | 100 | -> | Plus |
X | 3384387..3386002 | 1836..3451 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 3373183..3373723 | 1..541 | 100 | -> | Plus |
X | 3374940..3376233 | 542..1835 | 100 | -> | Plus |
X | 3384387..3386002 | 1836..3451 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 3267216..3267756 | 1..541 | 100 | -> | Plus |
arm_X | 3268973..3270266 | 542..1835 | 100 | -> | Plus |
arm_X | 3278420..3280035 | 1836..3451 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 3381281..3381821 | 1..541 | 100 | -> | Plus |
X | 3383038..3384331 | 542..1835 | 100 | -> | Plus |
X | 3392485..3394100 | 1836..3451 | 100 | Plus |
Translation from 607 to 2760
> LD32539.pep MALYRSDPYSIMDDQLFSNISIFDMDNDLYDMDKLLSSSTIQSDLEKIED MESVFQDYDLEEDMKPEIRNIDCMWPAMSSCLTSGNGNGIESGNSAASSY SETGAVSLAMVSGSTNLYSAYQRSQTTDNTQSNQQHVVNSAENMPVIIKK ELADLDYTVCQKRLRLSGGDKKSQIQDEVHLIPPGGSLLRKRNNQDIIRK SGELSGSDSIKYQRPDTPHSLTDEVAASEFRHNVDLRACVMGSNNISLTG NDSDVNYIKQISRELQNTGKDPLPVRYIPPINDVLDVLNQHSNSTGGQQQ LNQQQLDEQQQAIDIATGRNTVDSPPTTGSDSDSDDGEPLNFDLRHHRTS KSGSNASITTNNNNSNNKNNKLKNNSNGMLHMMHITDHSYTRCNDMVDDG PNLETPSDSDEEIDVVSYTDKKLPTNPSCHLMGALQFQMAHKISIDHMKQ KPRYNNFNLPYTPASSSPVKSVANSRYPSPSSTPYQNCSSASPSYSPLSV DSSNVSSSSSSSSSQSSFTTSSSNKGRKRSSLKDPGLLISSSSVYLPGVN NKVTHSSMMSKKSRGKKVVGTSSGNTSPISSGQDVDAMDRNWQRRSGGIA TSTSSNSSVHRKDFVLGFDEADTIEKRNQHNDMERQRRIGLKNLFEALKK QIPTIRDKERAPKVNILREAAKLCIQLTQEEKELSMQRQLLSLQLKQRQD TLASYQMELNESRSVSG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19606-PA | 873 | GF19606-PA | 191..873 | 9..717 | 1171 | 44.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18655-PA | 750 | GG18655-PA | 5..750 | 8..717 | 2596 | 76.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12538-PA | 755 | GH12538-PA | 655..754 | 616..715 | 359 | 68 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Myc-PA | 717 | CG10798-PA | 1..717 | 1..717 | 3680 | 100 | Plus |
Myc-PB | 717 | CG10798-PB | 1..717 | 1..717 | 3680 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14431-PA | 721 | GI14431-PA | 622..717 | 616..711 | 377 | 74 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13122-PA | 413 | GL13122-PA | 79..393 | 411..703 | 571 | 49.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10565-PA | 786 | GA10565-PA | 70..762 | 12..703 | 1069 | 45.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19268-PA | 715 | GM19268-PA | 1..715 | 1..717 | 2949 | 88.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16640-PA | 549 | GD16640-PA | 1..510 | 1..506 | 2251 | 89.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18771-PA | 729 | GJ18771-PA | 205..723 | 182..707 | 830 | 45.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24977-PA | 785 | GK24977-PA | 246..770 | 182..698 | 714 | 41.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16299-PA | 713 | GE16299-PA | 1..713 | 1..717 | 2693 | 82.9 | Plus |
Translation from 607 to 2760
> LD32539.hyp MALYRSDPYSIMDDQLFSNISIFDMDNDLYDMDKLLSSSTIQSDLEKIED MESVFQDYDLEEDMKPEIRNIDCMWPAMSSCLTSGNGNGIESGNSAASSY SETGAVSLAMVSGSTNLYSAYQRSQTTDNTQSNQQHVVNSAENMPVIIKK ELADLDYTVCQKRLRLSGGDKKSQIQDEVHLIPPGGSLLRKRNNQDIIRK SGELSGSDSIKYQRPDTPHSLTDEVAASEFRHNVDLRACVMGSNNISLTG NDSDVNYIKQISRELQNTGKDPLPVRYIPPINDVLDVLNQHSNSTGGQQQ LNQQQLDEQQQAIDIATGRNTVDSPPTTGSDSDSDDGEPLNFDLRHHRTS KSGSNASITTNNNNSNNKNNKLKNNSNGMLHMMHITDHSYTRCNDMVDDG PNLETPSDSDEEIDVVSYTDKKLPTNPSCHLMGALQFQMAHKISIDHMKQ KPRYNNFNLPYTPASSSPVKSVANSRYPSPSSTPYQNCSSASPSYSPLSV DSSNVSSSSSSSSSQSSFTTSSSNKGRKRSSLKDPGLLISSSSVYLPGVN NKVTHSSMMSKKSRGKKVVGTSSGNTSPISSGQDVDAMDRNWQRRSGGIA TSTSSNSSVHRKDFVLGFDEADTIEKRNQHNDMERQRRIGLKNLFEALKK QIPTIRDKERAPKVNILREAAKLCIQLTQEEKELSMQRQLLSLQLKQRQD TLASYQMELNESRSVSG*