Clone LD32539 Report

Search the DGRC for LD32539

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:325
Well:39
Vector:pOT2
Associated Gene/Transcriptdm-RA
Protein status:LD32539.pep: gold
Preliminary Size:3355
Sequenced Size:3472

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10798 2001-09-19 Blastp of sequenced clone
CG10798 2003-01-01 Sim4 clustering to Release 3
dm 2008-04-29 Release 5.5 accounting
dm 2008-08-15 Release 5.9 accounting
dm 2008-12-18 5.12 accounting

Clone Sequence Records

LD32539.complete Sequence

3472 bp (3472 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058627

> LD32539.complete
CGTGTTCAGTTCACCGCGGGTAATTCAGAGAATCGCTTTGTGGATTGGAT
TTTTGCCTGTTTTCCGCCCGATACAAAAAAAAAAAACCAAACGCTATATA
AATAGTTCTGTAGTAAAACCTGAAGCAACACGTTTTAAAATATACAACTA
CTACTAACAACTGTCACAGCCAAGTTACAAAAGTGCTAAATCCCAGAAAT
AACCTAAGAGCCGACTTAAAACCGCGCAAATACATAAAAAAAAATCTTCT
CCAAAGCAGAAACAAAAACTTGTGAAAAACTAGAATTAAAAAAAGATTTT
TTAAAAAAAATCAGCTAGTGCAAAATAAACGGGAAGAATTTTTTTTTGTG
TCCCTTTTTTTGGTGTTTTTTCTCCGTCTTTCCCCTTCTTTGACGCAAAA
AAAAAAGTGCCCAACTTGCTGGCGGCACGGGAACGGGATAGAAATAGATA
TAGCCGAAAGCGACTGGAAAGCAAAGGAAGCTAACTAAATTGGATTACAA
TCAATTAAATAGAGACGGATACGGAAACTATGTTCAGCGAGACAGGCATA
TAACTCAGGAACTTAAGATATATAGAAAGAAAAAAAAACCCAGACAACAT
AATCGCAATGGCCCTTTACCGCTCTGATCCGTATTCCATAATGGACGACC
AACTTTTTTCAAATATTTCAATATTCGATATGGATAATGATCTGTACGAT
ATGGACAAACTCCTTTCGTCGTCCACCATTCAGAGTGATCTCGAGAAGAT
CGAGGACATGGAAAGTGTATTTCAAGACTATGACTTAGAGGAGGATATGA
AGCCAGAGATCCGCAACATCGACTGCATGTGGCCGGCGATGTCCAGCTGT
TTGACCAGCGGTAACGGTAATGGAATAGAGAGCGGAAACAGTGCAGCCTC
GTCGTACAGCGAAACCGGTGCCGTATCCCTGGCGATGGTTTCCGGCTCTA
CGAATCTCTACAGCGCGTATCAACGATCGCAGACGACAGATAACACCCAG
TCAAATCAACAGCATGTCGTCAACAGTGCCGAGAACATGCCGGTGATCAT
CAAGAAGGAGCTCGCAGATCTGGACTACACGGTCTGTCAGAAGCGCCTCC
GTTTGAGCGGCGGTGACAAGAAGTCACAGATCCAGGACGAGGTCCATTTA
ATACCGCCCGGCGGAAGTTTGCTCCGCAAGCGGAACAACCAGGACATTAT
CCGCAAATCGGGCGAATTGAGCGGCAGCGATAGCATAAAATACCAGAGAC
CAGACACACCTCACAGTCTTACCGACGAGGTGGCCGCCTCAGAGTTTAGA
CATAACGTCGACTTGCGTGCCTGCGTGATGGGCAGCAATAATATCTCGCT
GACCGGCAATGATAGCGATGTCAACTACATTAAGCAAATCAGCAGGGAGC
TTCAGAATACCGGCAAGGATCCGTTGCCGGTGCGTTACATCCCGCCGATC
AACGATGTCCTCGATGTGCTCAACCAGCATTCCAATTCGACGGGTGGCCA
ACAGCAGTTGAACCAACAGCAACTGGACGAGCAACAACAGGCCATCGATA
TAGCCACTGGACGCAACACAGTGGATTCTCCGCCGACGACCGGCTCTGAT
AGTGACTCCGATGACGGTGAACCCCTCAACTTTGACCTGCGCCATCATCG
CACTAGCAAAAGCGGCAGCAATGCCAGCATCACCACCAACAACAACAACA
GCAACAACAAAAACAACAAATTGAAGAACAACAGCAACGGCATGCTGCAC
ATGATGCACATCACCGATCACAGCTACACGCGCTGCAACGATATGGTGGA
CGATGGTCCCAATTTGGAGACCCCCTCAGATTCCGATGAGGAAATCGATG
TCGTTTCATATACGGACAAGAAGCTACCCACAAATCCCTCGTGCCACTTG
ATGGGCGCCCTACAGTTCCAGATGGCCCATAAGATCTCGATTGATCACAT
GAAGCAAAAACCGCGCTACAATAACTTCAATCTGCCGTACACACCGGCCA
GCAGCAGTCCAGTGAAATCGGTGGCCAACTCGCGTTATCCATCACCGTCG
AGCACACCGTATCAGAACTGCTCCTCCGCTTCGCCGTCCTACTCGCCGCT
ATCCGTGGACTCTTCAAATGTCAGCTCGAGCAGCTCCAGTTCCAGTTCGC
AGTCAAGCTTCACCACCTCCAGTTCGAACAAGGGACGCAAACGATCCAGT
CTGAAGGATCCAGGCTTGTTGATCTCCTCCAGCAGCGTTTATCTGCCGGG
AGTCAATAACAAAGTGACGCATAGCTCCATGATGAGCAAAAAGAGTCGTG
GCAAGAAGGTGGTTGGCACCTCGTCTGGCAATACATCTCCGATATCGTCT
GGCCAGGATGTGGATGCCATGGATCGTAATTGGCAGCGGCGCAGTGGTGG
AATTGCCACTAGCACAAGCTCCAACAGCAGTGTCCATCGGAAGGACTTTG
TTTTGGGCTTTGATGAGGCCGATACGATCGAGAAGCGCAATCAGCACAAT
GATATGGAGCGTCAGCGACGCATTGGACTCAAGAACCTCTTTGAGGCTCT
AAAGAAACAGATTCCCACAATTAGGGACAAGGAGCGGGCTCCCAAGGTAA
ATATCCTGCGAGAGGCGGCCAAGCTATGCATCCAGCTGACCCAGGAGGAG
AAGGAGCTTAGTATGCAGCGCCAGCTTTTGTCGCTGCAGCTGAAGCAACG
TCAGGACACTCTGGCCAGTTACCAAATGGAGTTGAACGAATCGCGCTCGG
TTAGTGGATAGTGTTGTCTCATACTATCGGCTTAAAGCGGCGGCGTAGGG
CTAGGATAACCCCCAATGTATATGCAAGATTTGTATATCCTCCTACTTTT
TTTTTTTTGCAATTTACTTTGATTTAGCTTCGATCCTTTCTTGACATTAA
GCCCTAAATATGATTTTTTTCTGGAGAACTTCAATATCAGTTAGTAGGTT
ATGTTTAACGATTTGCTTGCGCTTTTTCCGCTTTTTTTTTTGTTTTTTTA
CCATACCATACCATACCATACAAGGGGTTAGAGTTTACGAGTGATTTAAC
AAATTTGATTTCTTCAATGTGATATATATATGATTTTCTTTCCGCGCGAT
TTGATTTGGTAGGGAAAGGTTAACGAAAGCGGTTTTATGAAATCAATTTG
AAGTGTTTTTTTTTCGCTGCATATATTACAATATACACGTATGGATTAGA
TTTAATTAACAATTAGCGGTCTGTATATAACATATGAAGTAGAATATCTT
AATTATTTTTTTGAATTAGTTACTTAACCATGAAGTAAACAAAAAGGAAA
ACATTTAAAAAACACAAAAAATGAGGACAAAGAACCAAACATTGAAAAGT
GAAAGGAATAGTTAGAAATGACAGACCTAGCGGAGAAACGAAACACAAAA
AAAAAAAAAAAAGAAACTGAAGGGAAAAACACAAAAGGAGAGAACAAAAA
CAAAAAAAAAAAAAAAAAAAAA

LD32539.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
dm.d 5820 dm.d 46..3510 1..3465 17310 99.9 Plus
dm.b 5465 dm.b 46..3510 1..3465 17310 99.9 Plus
dm.c 4144 dm.c 46..3510 1..3465 17310 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 3278007..3279615 1835..3451 7740 99 Plus
chrX 22417052 chrX 3268541..3269849 540..1840 6300 99.1 Plus
chrX 22417052 chrX 3266789..3267330 1..541 2660 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:26:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3384386..3386016 1835..3465 8140 99.9 Plus
X 23542271 X 3374938..3376238 540..1840 6490 99.9 Plus
X 23542271 X 3373183..3373723 1..541 2705 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 3392484..3394114 1835..3465 8140 99.9 Plus
X 23527363 X 3383036..3384336 540..1840 6490 99.9 Plus
X 23527363 X 3381281..3381821 1..541 2705 100 Plus
Blast to na_te.dros performed 2019-03-16 02:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6944 1501..1741 153 57.2 Plus
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 4..173 150..334 142 58.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6961..7064 1646..1747 137 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..7005 1499..1778 130 54.4 Plus

LD32539.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:42:09 Download gff for LD32539.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 3268543..3269844 542..1835 99 -> Plus
chrX 3266789..3267330 1..541 99 -> Plus
chrX 3278008..3279615 1836..3451 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:33:14 Download gff for LD32539.complete
Subject Subject Range Query Range Percent Splice Strand
dm-RA 1..2154 608..2761 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:01:18 Download gff for LD32539.complete
Subject Subject Range Query Range Percent Splice Strand
dm-RA 1..2154 608..2761 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:36:59 Download gff for LD32539.complete
Subject Subject Range Query Range Percent Splice Strand
dm-RB 1..2154 608..2761 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:31:47 Download gff for LD32539.complete
Subject Subject Range Query Range Percent Splice Strand
dm-RA 1..2154 608..2761 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:17:12 Download gff for LD32539.complete
Subject Subject Range Query Range Percent Splice Strand
dm-RB 1..2154 608..2761 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:33:14 Download gff for LD32539.complete
Subject Subject Range Query Range Percent Splice Strand
dm-RA 1..3451 1..3451 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:01:18 Download gff for LD32539.complete
Subject Subject Range Query Range Percent Splice Strand
dm-RA 1..3451 1..3451 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:36:59 Download gff for LD32539.complete
Subject Subject Range Query Range Percent Splice Strand
dm-RA 25..3475 1..3451 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:31:47 Download gff for LD32539.complete
Subject Subject Range Query Range Percent Splice Strand
dm-RA 1..3451 1..3451 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:17:12 Download gff for LD32539.complete
Subject Subject Range Query Range Percent Splice Strand
dm-RA 25..3475 1..3451 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:42:09 Download gff for LD32539.complete
Subject Subject Range Query Range Percent Splice Strand
X 3373183..3373723 1..541 100 -> Plus
X 3374940..3376233 542..1835 100 -> Plus
X 3384387..3386002 1836..3451 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:42:09 Download gff for LD32539.complete
Subject Subject Range Query Range Percent Splice Strand
X 3373183..3373723 1..541 100 -> Plus
X 3374940..3376233 542..1835 100 -> Plus
X 3384387..3386002 1836..3451 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:42:09 Download gff for LD32539.complete
Subject Subject Range Query Range Percent Splice Strand
X 3373183..3373723 1..541 100 -> Plus
X 3374940..3376233 542..1835 100 -> Plus
X 3384387..3386002 1836..3451 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:36:59 Download gff for LD32539.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3267216..3267756 1..541 100 -> Plus
arm_X 3268973..3270266 542..1835 100 -> Plus
arm_X 3278420..3280035 1836..3451 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:08:21 Download gff for LD32539.complete
Subject Subject Range Query Range Percent Splice Strand
X 3381281..3381821 1..541 100 -> Plus
X 3383038..3384331 542..1835 100 -> Plus
X 3392485..3394100 1836..3451 100   Plus

LD32539.pep Sequence

Translation from 607 to 2760

> LD32539.pep
MALYRSDPYSIMDDQLFSNISIFDMDNDLYDMDKLLSSSTIQSDLEKIED
MESVFQDYDLEEDMKPEIRNIDCMWPAMSSCLTSGNGNGIESGNSAASSY
SETGAVSLAMVSGSTNLYSAYQRSQTTDNTQSNQQHVVNSAENMPVIIKK
ELADLDYTVCQKRLRLSGGDKKSQIQDEVHLIPPGGSLLRKRNNQDIIRK
SGELSGSDSIKYQRPDTPHSLTDEVAASEFRHNVDLRACVMGSNNISLTG
NDSDVNYIKQISRELQNTGKDPLPVRYIPPINDVLDVLNQHSNSTGGQQQ
LNQQQLDEQQQAIDIATGRNTVDSPPTTGSDSDSDDGEPLNFDLRHHRTS
KSGSNASITTNNNNSNNKNNKLKNNSNGMLHMMHITDHSYTRCNDMVDDG
PNLETPSDSDEEIDVVSYTDKKLPTNPSCHLMGALQFQMAHKISIDHMKQ
KPRYNNFNLPYTPASSSPVKSVANSRYPSPSSTPYQNCSSASPSYSPLSV
DSSNVSSSSSSSSSQSSFTTSSSNKGRKRSSLKDPGLLISSSSVYLPGVN
NKVTHSSMMSKKSRGKKVVGTSSGNTSPISSGQDVDAMDRNWQRRSGGIA
TSTSSNSSVHRKDFVLGFDEADTIEKRNQHNDMERQRRIGLKNLFEALKK
QIPTIRDKERAPKVNILREAAKLCIQLTQEEKELSMQRQLLSLQLKQRQD
TLASYQMELNESRSVSG*

LD32539.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19606-PA 873 GF19606-PA 191..873 9..717 1171 44.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:45:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18655-PA 750 GG18655-PA 5..750 8..717 2596 76.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:45:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12538-PA 755 GH12538-PA 655..754 616..715 359 68 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
Myc-PA 717 CG10798-PA 1..717 1..717 3680 100 Plus
Myc-PB 717 CG10798-PB 1..717 1..717 3680 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14431-PA 721 GI14431-PA 622..717 616..711 377 74 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:45:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13122-PA 413 GL13122-PA 79..393 411..703 571 49.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:45:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10565-PA 786 GA10565-PA 70..762 12..703 1069 45.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19268-PA 715 GM19268-PA 1..715 1..717 2949 88.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16640-PA 549 GD16640-PA 1..510 1..506 2251 89.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18771-PA 729 GJ18771-PA 205..723 182..707 830 45.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24977-PA 785 GK24977-PA 246..770 182..698 714 41.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16299-PA 713 GE16299-PA 1..713 1..717 2693 82.9 Plus

LD32539.hyp Sequence

Translation from 607 to 2760

> LD32539.hyp
MALYRSDPYSIMDDQLFSNISIFDMDNDLYDMDKLLSSSTIQSDLEKIED
MESVFQDYDLEEDMKPEIRNIDCMWPAMSSCLTSGNGNGIESGNSAASSY
SETGAVSLAMVSGSTNLYSAYQRSQTTDNTQSNQQHVVNSAENMPVIIKK
ELADLDYTVCQKRLRLSGGDKKSQIQDEVHLIPPGGSLLRKRNNQDIIRK
SGELSGSDSIKYQRPDTPHSLTDEVAASEFRHNVDLRACVMGSNNISLTG
NDSDVNYIKQISRELQNTGKDPLPVRYIPPINDVLDVLNQHSNSTGGQQQ
LNQQQLDEQQQAIDIATGRNTVDSPPTTGSDSDSDDGEPLNFDLRHHRTS
KSGSNASITTNNNNSNNKNNKLKNNSNGMLHMMHITDHSYTRCNDMVDDG
PNLETPSDSDEEIDVVSYTDKKLPTNPSCHLMGALQFQMAHKISIDHMKQ
KPRYNNFNLPYTPASSSPVKSVANSRYPSPSSTPYQNCSSASPSYSPLSV
DSSNVSSSSSSSSSQSSFTTSSSNKGRKRSSLKDPGLLISSSSVYLPGVN
NKVTHSSMMSKKSRGKKVVGTSSGNTSPISSGQDVDAMDRNWQRRSGGIA
TSTSSNSSVHRKDFVLGFDEADTIEKRNQHNDMERQRRIGLKNLFEALKK
QIPTIRDKERAPKVNILREAAKLCIQLTQEEKELSMQRQLLSLQLKQRQD
TLASYQMELNESRSVSG*

LD32539.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
dm-PA 717 CG10798-PA 1..717 1..717 3680 100 Plus
dm-PB 717 CG10798-PB 1..717 1..717 3680 100 Plus