Clone LD32631 Report

Search the DGRC for LD32631

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:326
Well:31
Vector:pOT2
Associated Gene/Transcripttef-RA
Protein status:LD32631.pep: gold
Preliminary Size:2176
Sequenced Size:2161

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8961 2001-01-01 Release 2 assignment
CG8961 2001-07-04 Blastp of sequenced clone
CG8961 2003-01-01 Sim4 clustering to Release 3
tef 2008-04-29 Release 5.5 accounting
tef 2008-08-15 Release 5.9 accounting
tef 2008-12-18 5.12 accounting

Clone Sequence Records

LD32631.complete Sequence

2161 bp (2161 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051818

> LD32631.complete
CTTTCAGCCCTCTTTTTAAGACGACGCGCGATTGTAATTTGTTAATATTA
TTAAGTCTTTAGTCCTGTGATTTTTATAATGTCTAAGTTTCTGGACATGC
TATCGGGGAGCCAGTGCGTCAGCCTGGAAAAGTGCGGCGATGTGGTGGTC
TCAACCAACGACTGTATGATTGCACTTTACTGCCACTTCTGCCGTGACCT
CTTCACACAACTGCCGGAGTTCTTAAGACACCTCCAAAGCAACCATTCGG
ATGTGCTGCACTTCACCAAGGAGCACAACGTTTACAGCGTGGAGGAGCTG
TTGTCCGGTGAGCAGGGTAAAGCCCACGAGGACGCCCAGTCGGCGGGGCA
CAACAGCAGCAGCGGTGACTCTAGTTCACTGATGAATTCAGAGGATTCTA
GGGCCATCGAAGGCTCAGAAGATAACTCAGACAATAGCCCAATGAAACCT
GAACAAATAGGGAAACAGAGTGAAATAAACCTGCTAGCGGAAGTGACAAA
CATTTTATTGCAAACCAACGACAAGGAATTAAAACCCGAAAATGGCGTAT
TCAACAGACCACGCAAAAAGGCTAATAACGAGAGCAGTTCTTTGAAGATA
TGCGATCTGAAGAGTCACACTATTGCAAGGACTTCGCGAAAGCGAATGAG
CATGGTAAAGAACCGCATCCTGCGAGTCCTTGACAGCGATTTGTCTGCAA
AGCTTGAAATTAAACCTCCAGAGCCCAACTCCAAACTTTCTATAACTGAG
CCCATCCAAGAAGACAACATACCTGGAACATGTTTTGACACTCCTACAAA
GCCCATACCGAGCTCATCTCAATTAAGTGTAAGAAAGTCTTCTTTAACAG
AGGCAAACCAAATATGTACCAAATATGCCGAGAAGAAAACGGCGCCTACC
ATGCCTAAGCTACTGAACTGTGTACCAAAGCCCATATTAACTAGTCAACA
AGCTCATACTAATGCCGAGATAAGTGAGATAAATGAAACCTATCACCTAG
CAGCTAGTCAAGTGACAAAAACCACGAAAACATTTCCCGTAAAAATAACA
CAAATAGATATTTTACAACCAGTTAAGTTACCTAAAACTTTAATAACACC
AATCAATGAAGAGGGTGTCAGTGACCAAGTGGAGAATAGCACGAATAATA
TAAACAATGCCCAAAGTCTGCCGAAAGAAAACACAAAAAAGTTTTTTAAA
AAGCGTAGCGAATTAGGGATAAAAGCTCAAGGCAGTCCCAACAAATTTTT
TAAAATAATAAAGTCCAAGGCAAACCCCATTATTGTAAAACGGGTGCAGA
CCACCAGTGCCAAAGCTAGTACAAACAAAATCCAAATACGATCTAATGAC
AAAACTAATTGTTTTGCTTCTGAGTTTAACAGCACAAAGATCCGCAAGTT
AAAGATGGAAAATTGCGTCGACCTAAAATCGGAAGATCCCTGCGCCAATA
CAAATACGCGTTTAAACAAATTGGCAACAATAAGCAGTTGCGAAATATTA
AAAGCGGTTGGATTGCCGGCAATCACAGATAACCCGATCGAGGATACATT
ATTGCCAGACGAGTTAGAAACGATCCGAAAAAAGGCAGATCAATTCATCA
AAATCTACAGGAAGTACGATTCTATTTGGAATTATAGAAAAATTTGTCCG
CCAGCGAAACCGGACTTTATTTCTCAACAGATATTTGCTTTAACCAGAGA
AGTTAACAAGACAATGTTATGCAACCTGGCGAACAGCGATATAAAAGGCA
TTATTAATCAGATTTCAGTTTGGCATTACAATATATATACCCAATATATT
GACTTGGATACCATTTCGGAAAATGCCCGATATACTTTAAAGCTATTCTC
GTTTTTACCTGTTAGTTTTGCTTACTTTTGCAAATGTTGCGACGATATTT
TCATCTTAAAGAAAGAGTACTTAAAGCATTTGATTTCTCACCAAGTTCGG
TTTCAGTGCACAAAATGCATTAAAGTATTCAAGTACAAGGGATACTATGA
AAAGCATTTGCGAAACGCTCATTCTTAAGCCACAATGTGTCATTTAGTCA
TGGTTACATATATTTTTTCTAACCCTACATAAAGTTATGTATTTATTAAA
TAAAAAGGAATTCCGAAAAGCTAATGCTAACCAATTTGTCAATAAAAAAA
AAAAAAAAAAA

LD32631.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:30:48
Subject Length Description Subject Range Query Range Score Percent Strand
tef-RA 2210 tef-RA 48..2193 1..2146 10730 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12942435..12943498 1512..449 5305 99.9 Minus
chr2R 21145070 chr2R 12941746..12942376 2143..1513 3140 99.8 Minus
chr2R 21145070 chr2R 12943563..12944010 448..1 2240 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:26:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17055235..17056298 1512..449 5320 100 Minus
2R 25286936 2R 17054543..17055176 2146..1513 3170 100 Minus
2R 25286936 2R 17056363..17056810 448..1 2240 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17056434..17057497 1512..449 5320 100 Minus
2R 25260384 2R 17055742..17056375 2146..1513 3170 100 Minus
2R 25260384 2R 17057562..17058009 448..1 2240 100 Minus
Blast to na_te.dros performed 2019-03-15 16:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 711..752 1653..1694 138 81 Plus
copia 5143 copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). 540..654 1543..1659 120 58.1 Plus

LD32631.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:03:16 Download gff for LD32631.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12941746..12942376 1513..2143 99 <- Minus
chr2R 12942435..12943498 449..1512 99 <- Minus
chr2R 12943563..12944010 1..448 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:14:11 Download gff for LD32631.complete
Subject Subject Range Query Range Percent Splice Strand
tef-RA 1..1950 79..2028 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:19:12 Download gff for LD32631.complete
Subject Subject Range Query Range Percent Splice Strand
tef-RA 1..1950 79..2028 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:50:26 Download gff for LD32631.complete
Subject Subject Range Query Range Percent Splice Strand
tef-RA 1..1950 79..2028 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:50:48 Download gff for LD32631.complete
Subject Subject Range Query Range Percent Splice Strand
tef-RA 1..1950 79..2028 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:24:36 Download gff for LD32631.complete
Subject Subject Range Query Range Percent Splice Strand
tef-RA 1..1950 79..2028 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:14:50 Download gff for LD32631.complete
Subject Subject Range Query Range Percent Splice Strand
tef-RA 15..2157 1..2143 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:19:12 Download gff for LD32631.complete
Subject Subject Range Query Range Percent Splice Strand
tef-RA 15..2157 1..2143 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:26 Download gff for LD32631.complete
Subject Subject Range Query Range Percent Splice Strand
tef-RA 26..2168 1..2143 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:50:48 Download gff for LD32631.complete
Subject Subject Range Query Range Percent Splice Strand
tef-RA 15..2157 1..2143 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:24:36 Download gff for LD32631.complete
Subject Subject Range Query Range Percent Splice Strand
tef-RA 26..2168 1..2143 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:03:16 Download gff for LD32631.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17054546..17055176 1513..2143 100 <- Minus
2R 17055235..17056298 449..1512 100 <- Minus
2R 17056363..17056810 1..448 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:03:16 Download gff for LD32631.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17054546..17055176 1513..2143 100 <- Minus
2R 17055235..17056298 449..1512 100 <- Minus
2R 17056363..17056810 1..448 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:03:16 Download gff for LD32631.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17054546..17055176 1513..2143 100 <- Minus
2R 17055235..17056298 449..1512 100 <- Minus
2R 17056363..17056810 1..448 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:26 Download gff for LD32631.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12942051..12942681 1513..2143 100 <- Minus
arm_2R 12942740..12943803 449..1512 100 <- Minus
arm_2R 12943868..12944315 1..448 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:29:08 Download gff for LD32631.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17055745..17056375 1513..2143 100 <- Minus
2R 17056434..17057497 449..1512 100 <- Minus
2R 17057562..17058009 1..448 100   Minus

LD32631.pep Sequence

Translation from 78 to 2027

> LD32631.pep
MSKFLDMLSGSQCVSLEKCGDVVVSTNDCMIALYCHFCRDLFTQLPEFLR
HLQSNHSDVLHFTKEHNVYSVEELLSGEQGKAHEDAQSAGHNSSSGDSSS
LMNSEDSRAIEGSEDNSDNSPMKPEQIGKQSEINLLAEVTNILLQTNDKE
LKPENGVFNRPRKKANNESSSLKICDLKSHTIARTSRKRMSMVKNRILRV
LDSDLSAKLEIKPPEPNSKLSITEPIQEDNIPGTCFDTPTKPIPSSSQLS
VRKSSLTEANQICTKYAEKKTAPTMPKLLNCVPKPILTSQQAHTNAEISE
INETYHLAASQVTKTTKTFPVKITQIDILQPVKLPKTLITPINEEGVSDQ
VENSTNNINNAQSLPKENTKKFFKKRSELGIKAQGSPNKFFKIIKSKANP
IIVKRVQTTSAKASTNKIQIRSNDKTNCFASEFNSTKIRKLKMENCVDLK
SEDPCANTNTRLNKLATISSCEILKAVGLPAITDNPIEDTLLPDELETIR
KKADQFIKIYRKYDSIWNYRKICPPAKPDFISQQIFALTREVNKTMLCNL
ANSDIKGIINQISVWHYNIYTQYIDLDTISENARYTLKLFSFLPVSFAYF
CKCCDDIFILKKEYLKHLISHQVRFQCTKCIKVFKYKGYYEKHLRNAHS*

LD32631.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13428-PA 384 GF13428-PA 1..233 1..248 409 39.9 Plus
Dana\GF13428-PA 384 GF13428-PA 211..383 451..622 246 32.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22222-PA 658 GG22222-PA 1..657 1..648 2345 72.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22944-PA 667 GH22944-PA 486..664 473..649 246 32.1 Plus
Dgri\GH22944-PA 667 GH22944-PA 1..84 1..87 225 52.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
tef-PA 649 CG8961-PA 1..649 1..649 3365 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18435-PA 391 GI18435-PA 1..228 1..224 283 35.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10555-PA 920 GL10555-PA 1..283 1..206 360 36 Plus
Dper\GL10555-PA 920 GL10555-PA 737..917 473..648 327 38.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:09:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21437-PA 485 GA21437-PA 1..267 1..197 331 36.2 Plus
Dpse\GA21437-PA 485 GA21437-PA 302..482 473..648 322 39.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20010-PA 656 GM20010-PA 1..655 1..648 3036 89 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25499-PA 658 GD25499-PA 1..657 1..648 2974 87.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21520-PA 576 GJ21520-PA 1..93 1..96 275 55.2 Plus
Dvir\GJ21520-PA 576 GJ21520-PA 452..573 531..649 185 35.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14219-PA 648 GE14219-PA 1..647 1..648 2417 72.8 Plus

LD32631.hyp Sequence

Translation from 78 to 2027

> LD32631.hyp
MSKFLDMLSGSQCVSLEKCGDVVVSTNDCMIALYCHFCRDLFTQLPEFLR
HLQSNHSDVLHFTKEHNVYSVEELLSGEQGKAHEDAQSAGHNSSSGDSSS
LMNSEDSRAIEGSEDNSDNSPMKPEQIGKQSEINLLAEVTNILLQTNDKE
LKPENGVFNRPRKKANNESSSLKICDLKSHTIARTSRKRMSMVKNRILRV
LDSDLSAKLEIKPPEPNSKLSITEPIQEDNIPGTCFDTPTKPIPSSSQLS
VRKSSLTEANQICTKYAEKKTAPTMPKLLNCVPKPILTSQQAHTNAEISE
INETYHLAASQVTKTTKTFPVKITQIDILQPVKLPKTLITPINEEGVSDQ
VENSTNNINNAQSLPKENTKKFFKKRSELGIKAQGSPNKFFKIIKSKANP
IIVKRVQTTSAKASTNKIQIRSNDKTNCFASEFNSTKIRKLKMENCVDLK
SEDPCANTNTRLNKLATISSCEILKAVGLPAITDNPIEDTLLPDELETIR
KKADQFIKIYRKYDSIWNYRKICPPAKPDFISQQIFALTREVNKTMLCNL
ANSDIKGIINQISVWHYNIYTQYIDLDTISENARYTLKLFSFLPVSFAYF
CKCCDDIFILKKEYLKHLISHQVRFQCTKCIKVFKYKGYYEKHLRNAHS*

LD32631.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
tef-PA 649 CG8961-PA 1..649 1..649 3365 100 Plus