Clone LD32660 Report

Search the DGRC for LD32660

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:326
Well:60
Vector:pOT2
Associated Gene/TranscriptCG3430-RA
Protein status:LD32660.pep: gold
Preliminary Size:2345
Sequenced Size:1988

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3430 2001-01-01 Release 2 assignment
CG3430 2001-11-12 Blastp of sequenced clone
CG3430 2003-01-01 Sim4 clustering to Release 3
CG3430 2008-04-29 Release 5.5 accounting
CG3430 2008-08-15 Release 5.9 accounting
CG3430 2008-12-18 5.12 accounting

Clone Sequence Records

LD32660.complete Sequence

1988 bp (1988 high quality bases) assembled on 2001-11-12

GenBank Submission: AY069585

> LD32660.complete
GTTTTTGAGGCATTTGCAAATTCATTCGTTAACTAGATAATGCCCTGTGC
GATGGAGCTGCCCAGCACGCCCGATGAACTGGCCGCCCAGCAAGCGGACA
GCGCTGCACTCAAGGACTTGCTCAAGGATCCCAGTCGTTGGCACTCGATT
CCCCTGCTCAACTACACGCCTCTTCACAAGCTGAAGGATCAGACTCTGGT
GCGCTTTCGTGGAATGATCCAGGACATGATGGACCCAGAAATCTATCTGG
AGCGCTACGAAGTGAAATCCGCCGACGGCAGCAAACGTGTACAGGAAGGA
AAGTACAGGGACTGCTTGAAAATAGCCAATGGCGAAGTGATTGACTACAA
CGCCGATGGAAACGTGCATGGAGAGAGGCGTACCATGTTCGTGGTCTCTG
TGCCTGGTCTGAACGATTGGAGCAAGGAGCATGAGAAGCTGTGCTGTCCC
CAGATCGATTTGGCCAGTCTGGGTCAATCTCCCAGTTCAGCCAAGAAGCG
GACTATTGTAGGCGAAGAAGAAGCCATGGATGTGGACGTTGCGAGCGAAA
CAACGTTCAAGCGACCCTGCCTAAAAGAGATTCAAAAAGATAGCGAGCCA
GTCGGCGCCTCCAAATCCTCTGTTCTTGGGTCTGATTACCTGATTAACTC
GCCTCTGCCGGATCGTCCCAGCATGGCATGCATGGTAAAGGTTTACGAGG
AGTTCGATACCTACCAGCTTAACTCGCTGGTCGACTTTGTGGGCTTTCTG
TCAGTGGATGCTTCACTAGACGCCGCTACCCTGGAAATAGACGATTGTGA
AAACTTGAGTGAACTGCAGGCAGCTCATCCATCGCCATTTCTTATACCCC
GCCTGCATGCCTTCGGAGTCCAGGTGCTGCCGCATGCCAATCCGCTGCTG
GACAAAAGCCTTCGACAGCCAACGGAAATATGTGAGGAGACGTATCCAAC
CCACCTTGCTGTGCACAAAGATCTGCGCATGCTTCTTAAACTCTGCCTCT
TTGATGACGATCTGGCTGCCGAGTATTTGCTCTCCCACCTAATATCTACG
GTCTACAGTCGTTCTGAGATGCAGAGCATCGGCAAGTTCGCCCTTAACCT
TTGTAATCTCCCTAAGAATTGTGAGGCGTATGCAACCAAGTTGTATCAAA
TTCTGGAGCTGCTACTGCCGGCCAGCCATTACATGCCCATGACTCTCGTC
ACACTAAACACGGCAGCCTTTGCCCCAAAGAAGGATTATGAGACAAACAA
GCTGGTTTCCGGCGTACTACAGTTGGCTCCCCATACGCATTTGGTGCTCG
ACGAGACGTGCATGCAACAGGGCAAGCTGGAGGCCAATGGTGTTCATGCC
GTTCAGCATTTAGCGCACTTGATCAATAATCAGGAACTGAAGTGCGACTT
TCAGTATTACCAAATAGACTACCAAGCAAATATTCCAGTTCTCGTGCTCA
GTGAAGGGCGAAGTATGTTGCCGAGCGATTTTGTGCTGCCCATTAATGCC
GATTCTAAGGCCGTGGAACTTGTTGATGAATCTCTAAAGGCAGCCCACCA
CTATCTGCAGCCATCACGTCTGCAGCAGTTTCGCAAGTACTTGACCACAG
CGCGCACTAGCGGCTTCAACGTGAGCGAGGAGCACACTGAAATGATCCAG
CAGGATTTCGTGGACATGCGTAAAGCTAATGTCAAAAGTAATGCCGATGA
TCTGCATGGATTGCTGGTCCTCTCACGGCTGCTGGGCATCGCCCGGGGGA
AGGATACGTTGGACAAAGAAACATGGCAGCTGGCTACGGAGTTCGAAGCA
AAGCGTCGCCAGCGTATTCAATCTCTGCCGAAATCATCTGCCCAATTGCG
CAATTAAGAGGGCCTCTCTTTTATACCATTTAATATTAAGTTTTTATAAA
TAAAATAGAATTTTTTAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD32660.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3430-RA 1973 CG3430-RA 52..1973 1..1922 9610 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:06:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6956143..6957372 1..1230 6150 100 Plus
chr2L 23010047 chr2L 6957739..6958188 1473..1922 2250 100 Plus
chr2L 23010047 chr2L 6957430..6957673 1230..1473 1220 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:26:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6957059..6958288 1..1230 6150 100 Plus
2L 23513712 2L 6958655..6959105 1473..1923 2255 100 Plus
2L 23513712 2L 6958346..6958589 1230..1473 1220 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6957059..6958288 1..1230 6150 100 Plus
2L 23513712 2L 6958655..6959105 1473..1923 2255 100 Plus
2L 23513712 2L 6958346..6958589 1230..1473 1220 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:05:58 has no hits.

LD32660.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:06:49 Download gff for LD32660.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6956143..6957371 1..1229 100 -> Plus
chr2L 6957430..6957673 1230..1473 100 -> Plus
chr2L 6957740..6958143 1474..1877 100 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:14:13 Download gff for LD32660.complete
Subject Subject Range Query Range Percent Splice Strand
CG3430-RA 1..1818 40..1857 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:28:05 Download gff for LD32660.complete
Subject Subject Range Query Range Percent Splice Strand
CG3430-RA 1..1818 40..1857 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:32:05 Download gff for LD32660.complete
Subject Subject Range Query Range Percent Splice Strand
CG3430-RA 1..1818 40..1857 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:55:42 Download gff for LD32660.complete
Subject Subject Range Query Range Percent Splice Strand
CG3430-RA 1..1818 40..1857 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:26:30 Download gff for LD32660.complete
Subject Subject Range Query Range Percent Splice Strand
CG3430-RA 1..1818 40..1857 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:05:07 Download gff for LD32660.complete
Subject Subject Range Query Range Percent Splice Strand
CG3430-RA 50..1971 1..1922 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:28:04 Download gff for LD32660.complete
Subject Subject Range Query Range Percent Splice Strand
CG3430-RA 50..1971 1..1922 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:32:05 Download gff for LD32660.complete
Subject Subject Range Query Range Percent Splice Strand
CG3430-RA 52..1973 1..1922 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:55:42 Download gff for LD32660.complete
Subject Subject Range Query Range Percent Splice Strand
CG3430-RA 50..1971 1..1922 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:26:30 Download gff for LD32660.complete
Subject Subject Range Query Range Percent Splice Strand
CG3430-RA 52..1973 1..1922 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:06:49 Download gff for LD32660.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6957059..6958287 1..1229 100 -> Plus
2L 6958346..6958589 1230..1473 100 -> Plus
2L 6958656..6959104 1474..1922 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:06:49 Download gff for LD32660.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6957059..6958287 1..1229 100 -> Plus
2L 6958346..6958589 1230..1473 100 -> Plus
2L 6958656..6959104 1474..1922 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:06:49 Download gff for LD32660.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6957059..6958287 1..1229 100 -> Plus
2L 6958346..6958589 1230..1473 100 -> Plus
2L 6958656..6959104 1474..1922 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:32:05 Download gff for LD32660.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6957059..6958287 1..1229 100 -> Plus
arm_2L 6958346..6958589 1230..1473 100 -> Plus
arm_2L 6958656..6959104 1474..1922 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:31:45 Download gff for LD32660.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6957059..6958287 1..1229 100 -> Plus
2L 6958346..6958589 1230..1473 100 -> Plus
2L 6958656..6959104 1474..1922 100   Plus

LD32660.pep Sequence

Translation from 39 to 1856

> LD32660.pep
MPCAMELPSTPDELAAQQADSAALKDLLKDPSRWHSIPLLNYTPLHKLKD
QTLVRFRGMIQDMMDPEIYLERYEVKSADGSKRVQEGKYRDCLKIANGEV
IDYNADGNVHGERRTMFVVSVPGLNDWSKEHEKLCCPQIDLASLGQSPSS
AKKRTIVGEEEAMDVDVASETTFKRPCLKEIQKDSEPVGASKSSVLGSDY
LINSPLPDRPSMACMVKVYEEFDTYQLNSLVDFVGFLSVDASLDAATLEI
DDCENLSELQAAHPSPFLIPRLHAFGVQVLPHANPLLDKSLRQPTEICEE
TYPTHLAVHKDLRMLLKLCLFDDDLAAEYLLSHLISTVYSRSEMQSIGKF
ALNLCNLPKNCEAYATKLYQILELLLPASHYMPMTLVTLNTAAFAPKKDY
ETNKLVSGVLQLAPHTHLVLDETCMQQGKLEANGVHAVQHLAHLINNQEL
KCDFQYYQIDYQANIPVLVLSEGRSMLPSDFVLPINADSKAVELVDESLK
AAHHYLQPSRLQQFRKYLTTARTSGFNVSEEHTEMIQQDFVDMRKANVKS
NADDLHGLLVLSRLLGIARGKDTLDKETWQLATEFEAKRRQRIQSLPKSS
AQLRN*

LD32660.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15437-PA 604 GF15437-PA 1..604 1..605 2647 81.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10446-PA 606 GG10446-PA 1..606 1..605 2964 90.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10377-PA 615 GH10377-PA 1..615 1..605 2265 71 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3430-PA 605 CG3430-PA 1..605 1..605 3129 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:36:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24084-PA 606 GI24084-PA 1..606 1..605 2309 72 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26196-PA 607 GL26196-PA 1..607 1..605 2507 77.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17447-PA 607 GA17447-PA 1..607 1..605 2506 77.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:36:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16255-PA 605 GM16255-PA 1..605 1..605 3147 96.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23441-PA 605 GD23441-PA 1..605 1..605 3177 97.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21346-PA 610 GJ21346-PA 1..610 1..605 2353 72.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24254-PA 605 GK24254-PA 1..605 1..605 2349 73.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14231-PA 606 GE14231-PA 1..606 1..605 3066 94.1 Plus

LD32660.hyp Sequence

Translation from 39 to 1856

> LD32660.hyp
MPCAMELPSTPDELAAQQADSAALKDLLKDPSRWHSIPLLNYTPLHKLKD
QTLVRFRGMIQDMMDPEIYLERYEVKSADGSKRVQEGKYRDCLKIANGEV
IDYNADGNVHGERRTMFVVSVPGLNDWSKEHEKLCCPQIDLASLGQSPSS
AKKRTIVGEEEAMDVDVASETTFKRPCLKEIQKDSEPVGASKSSVLGSDY
LINSPLPDRPSMACMVKVYEEFDTYQLNSLVDFVGFLSVDASLDAATLEI
DDCENLSELQAAHPSPFLIPRLHAFGVQVLPHANPLLDKSLRQPTEICEE
TYPTHLAVHKDLRMLLKLCLFDDDLAAEYLLSHLISTVYSRSEMQSIGKF
ALNLCNLPKNCEAYATKLYQILELLLPASHYMPMTLVTLNTAAFAPKKDY
ETNKLVSGVLQLAPHTHLVLDETCMQQGKLEANGVHAVQHLAHLINNQEL
KCDFQYYQIDYQANIPVLVLSEGRSMLPSDFVLPINADSKAVELVDESLK
AAHHYLQPSRLQQFRKYLTTARTSGFNVSEEHTEMIQQDFVDMRKANVKS
NADDLHGLLVLSRLLGIARGKDTLDKETWQLATEFEAKRRQRIQSLPKSS
AQLRN*

LD32660.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3430-PA 605 CG3430-PA 1..605 1..605 3129 100 Plus