Clone LD32677 Report

Search the DGRC for LD32677

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:326
Well:77
Vector:pOT2
Associated Gene/TranscriptCG3192-RA
Protein status:LD32677.pep: gold
Preliminary Size:1312
Sequenced Size:1380

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3192 2002-01-01 Sim4 clustering to Release 2
CG3192 2008-04-29 Stopped prior to 5.5

Clone Sequence Records

LD32677.complete Sequence

1380 bp assembled on 2009-12-14

GenBank Submission: BT120041.1

> LD32677.complete
AAGAATTCGCTGACTAGCACAATTTCTTGAATTACAACTCGTTTCGCGAG
TTTATGGTTCTCTCTTTTCCCTTTTTTTTTCAACGCCGTGAGTTTGTTTT
GTTTTCAATCATGTGATTTGAGTTTTGAGTGCGAAATGAAAATAAAAAAC
GTTTGCGAAAATTGAGTGAAAAAATCAATGCGACGGCTTCCAATTGGAGT
CGCGCGCCAATTGGAGTTTCGTCCACAAGTGGTCGCAGTGGTGTGCCAAT
TGGAACGTCCGTTCCAGCGCCTGGAAGTCGCTCGCCTCCGCTTTCCATTG
TGTAATGATTACGAAACGCCGGCATTTGTGCACTTTTCATTGGCATTTCT
GCTCGCCGCGCCTTGTTTACAATCAAAAAAATAACATATTTTGGAGTTAT
TAGCCGCTGCATGGGCGAATCTAGCATTACATAAGGCAAAATATTTTTGC
CATCTCGCTACAAAATATATATCCAATTTGCACAGCACTTGGAATCCTTA
CCAGACGCAAACTTCCAATGGCGGCCCAGGGTTTCGTCATTTGTTGAACG
CCGCGAAGCGTGGAGCGTTGCAATAATGCAGACCGTTGCGGCACTGTATC
CTATCGTTTGTGTGCCATCCGCAGGCGAACAGCTGTTTTTTCGGGAATCG
TAACTTCAGAGGAACTTTTTTTTAGTGGAAACAAGCCTGCAATGTCGGCG
TTTGTGAAAACCGTGTGCTTGGCCCAAAAGCTGTGCGCCGCCAATCCCGT
CGTGGCTCGCCAGGCGATCCGCAGCATGGCTGGCTGGAATAAGGACTACA
AGCCGGGTCCGTATCCACAGACGGAGAAGGAGCGCCTGGCGGCGGCCAAG
AAGTACTATCTGTTGCCGGAGGAGTACAAACCGTATGCGGACGATGGTCT
GGGCTACGGAGATTATCCCAAATTGGGCTACGGTCTGGGTGTGGAGGCCA
AGGACTCGTACTATCCCTGGGACTATCCGGAGCACAAGCGCAACCAACAC
GAGCCCATCTCGGCGGATCATGATCTGTACAGCGAGGATCGCTGGTCGCA
GGCCGAACCGCCACGCTACAGCAATGCGTACTACTTTGCCTGCTTCCTGG
GCGTGATGTCCGGCTGCCTGGCACTCTACTACTGGCTGGATGACAAGAAG
ATGTACCGCCCCGTGGCCGCCAAGCAATATCCCAGCCCTGGCGTCAAGCA
CTACACCTTCGAGAAGTAGGATTGTATCTATCACGCTCTCGATCGCACTG
CGCGCCTCGTTTTTATTTCATAGGCAATTAATCAACGCATCTATACAATT
AAAATGAATGGAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAACAAAAAAAAAAAAAAAAAAAAAA

LD32677.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3192-RA 1333 CG3192-RA 2..1319 1..1318 6590 100 Plus
CG3192-RB 967 CG3192-RB 152..892 578..1318 3705 100 Plus
l(1)G0255.a 1692 l(1)G0255.a 1..90 90..1 450 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6570714..6571290 578..1 2765 99 Minus
chrX 22417052 chrX 6569436..6569747 1318..1007 1560 100 Minus
chrX 22417052 chrX 6569824..6570053 1006..777 1120 99.1 Minus
chrX 22417052 chrX 6570172..6570370 776..578 965 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:26:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6678540..6679117 578..1 2890 100 Minus
X 23542271 X 6677264..6677575 1318..1007 1560 100 Minus
X 23542271 X 6677652..6677881 1006..777 1150 100 Minus
X 23542271 X 6678000..6678198 776..578 995 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6686638..6687215 578..1 2890 100 Minus
X 23527363 X 6685362..6685673 1318..1007 1560 100 Minus
X 23527363 X 6685750..6685979 1006..777 1150 100 Minus
X 23527363 X 6686098..6686296 776..578 995 100 Minus
Blast to na_te.dros performed 2019-03-16 01:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
accord2 7650 accord2 QBERT 7650bp 7003..7068 1344..1270 130 69.3 Minus

LD32677.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:07:45 Download gff for LD32677.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6570172..6570369 579..776 98 <- Minus
chrX 6569438..6569747 1007..1316 100 <- Minus
chrX 6569824..6570053 777..1006 99 <- Minus
chrX 6570714..6571290 1..578 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-12-14 11:37:45 Download gff for LD32677.complete
Subject Subject Range Query Range Percent Splice Strand
CG3192-RB 1..528 692..1219 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:28:40 Download gff for LD32677.complete
Subject Subject Range Query Range Percent Splice Strand
CG3192-RB 1..528 692..1219 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:39:08 Download gff for LD32677.complete
Subject Subject Range Query Range Percent Splice Strand
CG3192-RA 1..528 692..1219 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:23:56 Download gff for LD32677.complete
Subject Subject Range Query Range Percent Splice Strand
CG3192-RA 1..528 692..1219 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-14 11:37:45 Download gff for LD32677.complete
Subject Subject Range Query Range Percent Splice Strand
CG3192-RA 2..1317 1..1316 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:28:40 Download gff for LD32677.complete
Subject Subject Range Query Range Percent Splice Strand
CG3192-RA 2..1317 1..1316 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:39:08 Download gff for LD32677.complete
Subject Subject Range Query Range Percent Splice Strand
CG3192-RA 2..1317 1..1316 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:23:56 Download gff for LD32677.complete
Subject Subject Range Query Range Percent Splice Strand
CG3192-RA 2..1317 1..1316 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:07:45 Download gff for LD32677.complete
Subject Subject Range Query Range Percent Splice Strand
X 6677652..6677881 777..1006 100 <- Minus
X 6678000..6678197 579..776 100 <- Minus
X 6677266..6677575 1007..1316 100 <- Minus
X 6678540..6679117 1..578 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:07:45 Download gff for LD32677.complete
Subject Subject Range Query Range Percent Splice Strand
X 6677652..6677881 777..1006 100 <- Minus
X 6678000..6678197 579..776 100 <- Minus
X 6677266..6677575 1007..1316 100 <- Minus
X 6678540..6679117 1..578 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:07:45 Download gff for LD32677.complete
Subject Subject Range Query Range Percent Splice Strand
X 6677652..6677881 777..1006 100 <- Minus
X 6678000..6678197 579..776 100 <- Minus
X 6677266..6677575 1007..1316 100 <- Minus
X 6678540..6679117 1..578 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:39:08 Download gff for LD32677.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6571299..6571608 1007..1316 100 <- Minus
arm_X 6571685..6571914 777..1006 100 <- Minus
arm_X 6572033..6572230 579..776 100 <- Minus
arm_X 6572573..6573150 1..578 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:14:25 Download gff for LD32677.complete
Subject Subject Range Query Range Percent Splice Strand
X 6685364..6685673 1007..1316 100 <- Minus
X 6685750..6685979 777..1006 100 <- Minus
X 6686098..6686295 579..776 100 <- Minus
X 6686638..6687215 1..578 100   Minus

LD32677.pep Sequence

Translation from 691 to 1218

> LD32677.pep
MSAFVKTVCLAQKLCAANPVVARQAIRSMAGWNKDYKPGPYPQTEKERLA
AAKKYYLLPEEYKPYADDGLGYGDYPKLGYGLGVEAKDSYYPWDYPEHKR
NQHEPISADHDLYSEDRWSQAEPPRYSNAYYFACFLGVMSGCLALYYWLD
DKKMYRPVAAKQYPSPGVKHYTFEK*

LD32677.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:11:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20848-PA 177 GF20848-PA 1..175 1..175 847 88.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:11:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17665-PA 175 GG17665-PA 1..175 1..175 885 95.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24238-PA 175 GH24238-PA 1..175 1..175 713 74.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
ND-ASHI-PC 175 CG3192-PC 1..175 1..175 978 100 Plus
ND-ASHI-PB 175 CG3192-PB 1..175 1..175 978 100 Plus
ND-ASHI-PA 175 CG3192-PA 1..175 1..175 978 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21434-PA 175 GI21434-PA 1..175 1..175 708 76 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13370-PA 175 GL13370-PA 1..175 1..175 775 82.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16565-PA 175 GA16565-PA 1..175 1..175 775 82.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12565-PA 175 GM12565-PA 1..175 1..175 900 97.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16186-PA 175 GD16186-PA 1..175 1..175 913 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16452-PA 175 GJ16452-PA 1..175 1..175 740 77.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17672-PA 175 GK17672-PA 1..175 1..175 762 79.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:11:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16455-PA 175 GE16455-PA 1..175 1..175 890 96.6 Plus

LD32677.hyp Sequence

Translation from 691 to 1218

> LD32677.hyp
MSAFVKTVCLAQKLCAANPVVARQAIRSMAGWNKDYKPGPYPQTEKERLA
AAKKYYLLPEEYKPYADDGLGYGDYPKLGYGLGVEAKDSYYPWDYPEHKR
NQHEPISADHDLYSEDRWSQAEPPRYSNAYYFACFLGVMSGCLALYYWLD
DKKMYRPVAAKQYPSPGVKHYTFEK*

LD32677.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3192-PC 175 CG3192-PC 1..175 1..175 978 100 Plus
CG3192-PB 175 CG3192-PB 1..175 1..175 978 100 Plus
CG3192-PA 175 CG3192-PA 1..175 1..175 978 100 Plus