Clone LD32755 Report

Search the DGRC for LD32755

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:327
Well:55
Vector:pOT2
Associated Gene/TranscriptgammaTub37C-RA
Protein status:LD32755.pep: gold
Preliminary Size:1728
Sequenced Size:1516

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17566 2001-01-01 Release 2 assignment
CG17566 2001-12-12 Blastp of sequenced clone
CG17566 2003-01-01 Sim4 clustering to Release 3
gammaTub37C 2008-04-29 Release 5.5 accounting
gammaTub37C 2008-08-15 Release 5.9 accounting
gammaTub37C 2008-12-18 5.12 accounting

Clone Sequence Records

LD32755.complete Sequence

1516 bp (1516 high quality bases) assembled on 2001-12-12

GenBank Submission: AY070558

> LD32755.complete
ATTTACTGAGAAAGAAGCGAAATTAACTAAACTGCAATTCGAGCAAAATG
CCCAGCGAGATTATAACCCTTCAATTGGGCCAATGTGGCAATCAAATTGG
TTTCGAGTTCTGGAAGAGATTGTGCCTGGAGCACGGCATCTCCCCGGATG
GCGTCCTGGAAGACTTCGCCACCGATGGACAGGATCGCAAGGATGTGTTC
TTTTACCAGGCGGACGACAACCATTACATACCGCGGGCCGTTCTCATAGA
CTTAGAGCCCAGAGTCATTAACAACATCATGACCTCTCCGTACTCCAAGT
TGTACAACCAGGAGAATGTGTTCCTCTCCAAGCACGGCGGTGGAGCAGGA
AACAACTGGGCGTCCGGCTTTAGCCAGGGTGAGAAGGTGCAGGAGGAGGT
GTTCGACATTCTGGACCGCGAGGCCGATGGCAGCGATTCGCTGGAGGGAT
TCGTGCTCTGCCACTCGATAGCCGGCGGAACTGGGTCCGGAATGGGCTCA
TATGTCCTGGAACGGCTGTCCGAACGCTTTCCCAAGAAGCTCATACAGAC
GTACAGCGTTTTTCCCAATCAGGACGAGATCAGCGACGTGGTTGTGCAGC
CATATAACTCGATCCTTACCCTGAAGCGTTTGACCAAGTGCGCGGACAGT
GTGGTGGTGCTGGATAATACCGCACTGAACCGCATCGCCACCGAAAGATT
GCACATCCAAACGCCCACTTTTACGCAGATCAACAATCTGGTGTCCACCA
TCATGAGTCTGAGCACCACCACCCTGCGATATCCCTCGTACATGAACAAC
AACCTCATCGGTCTGACCGCCTCGCTCATTCCCACGCCCCAGCTGCACTT
CCTGATGACGGGATATACTCCGCTAATGTCCGACTGCGAGACCAAGACAA
GCGTTCGAAAGACCACCGTTTTGGATGTAATGCGTCGCCTTCTGCAGCCG
AAGAACATGATGGTTTCCGCGCTGACGGACAAGCAGAGCCGCCAGTGCTT
CGTCTCCATACTGAACATCATCCAGGGCGAGGTGGATCCATCCCAGGTGC
ACAAGTCGCTGCAGCGCATCCGCGAGCGAAAGCTGGCCAACTTCATACCA
TGGGGTCCGGCCAGCATCCAAGTGGCTCTGCCGCGCAGCTCGCCCTATGT
GCAGTCGGCCCACAAGGTATCCGGATTGATGATGGCCAATCACACGGGTA
TCAGTTCGCTCTTCAAGAGGGCCTTGGCCCAGTACGATAAGCTGAGGAAG
CGCAACGCCTTCCTCGACAACTTTCGCCGCGAATCCATGTTCCAGGACGA
CCTGACCGAACTGGACATCGCACGGGACACGGTTGACTGCTTGGTGCAGG
AATATGAGGCAGCCACCCAGATCGATTATCCCCAGTGGAGTCCTGCTGTC
GAAGCTTCGAAAGCCGGTTAATCGATAATTATTTATAATTCAACCGTCAA
TACTTTTTATTTTTTTTATCAACAATAATATATGTATTTAAAATAAAAAA
AAAAAAAAAAAAAAAA

LD32755.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
gammaTub37C-RA 1637 gammaTub37C-RA 37..1531 1..1495 7475 100 Plus
gammaTub37C.a 1607 gammaTub37C.a 197..1595 97..1495 6995 100 Plus
gammaTub23C.a 1837 gammaTub23C.a 191..978 87..874 1480 79.1 Plus
gammaTub37C.a 1607 gammaTub37C.a 32..127 1..96 480 100 Plus
gammaTub23C.a 1837 gammaTub23C.a 1112..1270 996..1154 300 79.2 Plus
gammaTub23C.a 1837 gammaTub23C.a 1345..1482 1229..1366 210 76.8 Plus
gammaTub23C.a 1837 gammaTub23C.a 1022..1084 906..968 165 84.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19182555..19183160 1494..889 3015 99.8 Minus
chr2L 23010047 chr2L 19183218..19183810 890..298 2950 99.8 Minus
chr2L 23010047 chr2L 2973081..2974156 303..1366 1310 75 Plus
chr2L 23010047 chr2L 19183917..19184119 299..97 1015 100 Minus
chr2L 23010047 chr2L 19184189..19184284 96..1 465 99 Minus
chr2L 23010047 chr2L 2972815..2972999 97..281 400 81.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:26:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19183969..19184575 1495..889 3035 100 Minus
2L 23513712 2L 19184633..19185225 890..298 2965 100 Minus
2L 23513712 2L 2973432..2974507 303..1366 1340 75.2 Plus
2L 23513712 2L 19185332..19185534 299..97 1015 100 Minus
2L 23513712 2L 19185604..19185699 96..1 480 100 Minus
2L 23513712 2L 2973166..2973350 97..281 400 81.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:16:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19183969..19184575 1495..889 3035 100 Minus
2L 23513712 2L 19184633..19185225 890..298 2965 100 Minus
2L 23513712 2L 2973432..2974003 303..874 1045 78.8 Plus
2L 23513712 2L 19185332..19185534 299..97 1015 100 Minus
2L 23513712 2L 19185604..19185699 96..1 480 100 Minus
2L 23513712 2L 2973166..2973350 97..281 400 81 Plus
2L 23513712 2L 2974137..2974246 996..1105 295 84.5 Plus
2L 23513712 2L 2974370..2974507 1229..1366 210 76.8 Plus
2L 23513712 2L 2974047..2974109 906..968 165 84.1 Plus
Blast to na_te.dros performed on 2019-03-15 13:42:29 has no hits.

LD32755.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:43:38 Download gff for LD32755.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19182600..19183158 891..1449 99 <- Minus
chr2L 19183218..19183808 300..890 99 <- Minus
chr2L 19183917..19184119 97..299 100 <- Minus
chr2L 19184189..19184284 1..96 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:14:22 Download gff for LD32755.complete
Subject Subject Range Query Range Percent Splice Strand
gammaTub37C-RA 1..1374 48..1421 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:19:17 Download gff for LD32755.complete
Subject Subject Range Query Range Percent Splice Strand
gammaTub37C-RA 1..1374 48..1421 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:09:49 Download gff for LD32755.complete
Subject Subject Range Query Range Percent Splice Strand
gammaTub37C-RA 1..1374 48..1421 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:45:24 Download gff for LD32755.complete
Subject Subject Range Query Range Percent Splice Strand
gammaTub37C-RA 1..1374 48..1421 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:38:23 Download gff for LD32755.complete
Subject Subject Range Query Range Percent Splice Strand
gammaTub37C-RA 1..1374 48..1421 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:52:36 Download gff for LD32755.complete
Subject Subject Range Query Range Percent Splice Strand
gammaTub37C-RA 11..1504 1..1494 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:19:17 Download gff for LD32755.complete
Subject Subject Range Query Range Percent Splice Strand
gammaTub37C-RA 26..1519 1..1494 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:09:49 Download gff for LD32755.complete
Subject Subject Range Query Range Percent Splice Strand
gammaTub37C-RA 28..1521 1..1494 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:45:24 Download gff for LD32755.complete
Subject Subject Range Query Range Percent Splice Strand
gammaTub37C-RA 11..1504 1..1494 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:38:23 Download gff for LD32755.complete
Subject Subject Range Query Range Percent Splice Strand
gammaTub37C-RA 28..1521 1..1494 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:43:38 Download gff for LD32755.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19183970..19184573 891..1494 100 <- Minus
2L 19184633..19185223 300..890 100 <- Minus
2L 19185332..19185534 97..299 100 <- Minus
2L 19185604..19185699 1..96 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:43:38 Download gff for LD32755.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19183970..19184573 891..1494 100 <- Minus
2L 19184633..19185223 300..890 100 <- Minus
2L 19185332..19185534 97..299 100 <- Minus
2L 19185604..19185699 1..96 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:43:38 Download gff for LD32755.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19183970..19184573 891..1494 100 <- Minus
2L 19184633..19185223 300..890 100 <- Minus
2L 19185332..19185534 97..299 100 <- Minus
2L 19185604..19185699 1..96 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:09:49 Download gff for LD32755.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19183970..19184573 891..1494 100 <- Minus
arm_2L 19184633..19185223 300..890 100 <- Minus
arm_2L 19185332..19185534 97..299 100 <- Minus
arm_2L 19185604..19185699 1..96 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:21:47 Download gff for LD32755.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19183970..19184573 891..1494 100 <- Minus
2L 19184633..19185223 300..890 100 <- Minus
2L 19185332..19185534 97..299 100 <- Minus
2L 19185604..19185699 1..96 100   Minus

LD32755.pep Sequence

Translation from 47 to 1420

> LD32755.pep
MPSEIITLQLGQCGNQIGFEFWKRLCLEHGISPDGVLEDFATDGQDRKDV
FFYQADDNHYIPRAVLIDLEPRVINNIMTSPYSKLYNQENVFLSKHGGGA
GNNWASGFSQGEKVQEEVFDILDREADGSDSLEGFVLCHSIAGGTGSGMG
SYVLERLSERFPKKLIQTYSVFPNQDEISDVVVQPYNSILTLKRLTKCAD
SVVVLDNTALNRIATERLHIQTPTFTQINNLVSTIMSLSTTTLRYPSYMN
NNLIGLTASLIPTPQLHFLMTGYTPLMSDCETKTSVRKTTVLDVMRRLLQ
PKNMMVSALTDKQSRQCFVSILNIIQGEVDPSQVHKSLQRIRERKLANFI
PWGPASIQVALPRSSPYVQSAHKVSGLMMANHTGISSLFKRALAQYDKLR
KRNAFLDNFRRESMFQDDLTELDIARDTVDCLVQEYEAATQIDYPQWSPA
VEASKAG*

LD32755.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:16:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15204-PA 458 GF15204-PA 1..456 1..456 2304 92.3 Plus
Dana\GF14993-PA 473 GF14993-PA 1..452 1..448 2044 82.5 Plus
Dana\GF12605-PA 447 GF12605-PA 3..429 4..440 680 34.5 Plus
Dana\GF17765-PA 446 GF17765-PA 3..429 4..440 656 33.6 Plus
Dana\GF11391-PA 474 GF11391-PA 3..458 4..443 627 31.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:16:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21644-PA 457 GG21644-PA 1..457 1..457 2441 98.2 Plus
Dere\GG24903-PA 475 GG24903-PA 1..460 1..456 2039 81.5 Plus
Dere\GG22960-PA 454 GG22960-PA 3..444 4..451 658 33.2 Plus
Dere\betaTub85D-PA 446 GG17374-PA 3..429 4..440 656 33.6 Plus
Dere\GG20906-PA 475 GG20906-PA 3..457 4..440 641 32.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:16:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13477-PA 454 GH13477-PA 1..453 1..455 2183 88.1 Plus
Dgri\GH11085-PA 476 GH11085-PA 1..451 1..448 2037 82.7 Plus
Dgri\GH20203-PA 447 GH20203-PA 3..429 4..440 680 34.5 Plus
Dgri\GH19142-PA 446 GH19142-PA 3..429 4..440 656 33.6 Plus
Dgri\GH20987-PA 454 GH20987-PA 3..438 4..443 656 33.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
gammaTub37C-PB 457 CG17566-PB 1..457 1..457 2361 100 Plus
gammaTub37C-PA 457 CG17566-PA 1..457 1..457 2361 100 Plus
gammaTub23C-PA 475 CG3157-PA 1..452 1..448 1964 83.2 Plus
betaTub97EF-PC 457 CG4869-PC 3..432 4..443 732 34.9 Plus
betaTub97EF-PB 457 CG4869-PB 3..432 4..443 731 34.5 Plus
betaTub56D-PB 447 CG9277-PB 3..442 4..453 723 33.9 Plus
betaTub60D-PB 453 CG3401-PB 3..437 4..443 705 33.4 Plus
betaTub60D-PA 454 CG3401-PA 3..438 4..443 704 33.3 Plus
betaTub85D-PA 446 CG9359-PA 3..429 4..440 693 33.6 Plus
betaTub56D-PA 456 CG9277-PA 29..451 21..453 661 32.7 Plus
alphaTub84D-PA 450 CG2512-PA 3..433 4..437 590 31.2 Plus
alphaTub85E-PA 449 CG9476-PA 3..433 4..437 589 31.2 Plus
alphaTub84B-PA 450 CG1913-PA 3..433 4..437 589 31 Plus
alphaTub67C-PA 462 CG8308-PA 3..444 4..437 565 30.5 Plus
CG32396-PA 462 CG32396-PA 3..426 4..441 551 30.9 Plus
CG7794-PA 455 CG7794-PA 6..433 4..436 496 28.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:16:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17230-PA 456 GI17230-PA 1..453 1..455 2249 90.8 Plus
Dmoj\GI17602-PA 478 GI17602-PA 1..458 1..455 2050 82.3 Plus
Dmoj\GI20729-PA 447 GI20729-PA 3..429 4..440 680 34.5 Plus
Dmoj\GI21321-PA 454 GI21321-PA 3..438 4..443 658 33.3 Plus
Dmoj\GI23599-PA 446 GI23599-PA 3..429 4..440 656 33.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21122-PA 458 GL21122-PA 1..452 1..452 2259 91.4 Plus
Dper\GL26300-PA 471 GL26300-PA 1..452 1..448 2029 81.4 Plus
Dper\GL16725-PA 447 GL16725-PA 3..429 4..440 680 34.5 Plus
Dper\GL13671-PA 445 GL13671-PA 3..428 4..440 616 32.9 Plus
Dper\GL23875-PA 511 GL23875-PA 3..488 4..443 585 29.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:16:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14559-PA 458 GA14559-PA 1..452 1..452 2259 91.4 Plus
Dpse\GA16328-PA 471 GA16328-PA 1..452 1..448 2029 81.4 Plus
Dpse\GA27086-PB 455 GA27086-PB 3..432 4..443 689 34.2 Plus
Dpse\GA27686-PA 447 GA27686-PA 3..429 4..440 680 34.5 Plus
Dpse\GA21728-PA 446 GA21728-PA 3..429 4..440 656 33.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:16:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17021-PA 457 GM17021-PA 1..457 1..457 2463 99.8 Plus
Dsec\GM18381-PA 475 GM18381-PA 1..452 1..448 2051 83.2 Plus
Dsec\GM19828-PA 447 GM19828-PA 3..429 4..440 680 34.5 Plus
Dsec\GM11852-PA 454 GM11852-PA 3..444 4..451 662 33.4 Plus
Dsec\GM26260-PA 446 GM26260-PA 3..429 4..440 656 33.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21771-PA 457 GD21771-PA 1..457 1..457 2472 100 Plus
Dsim\GD23196-PA 475 GD23196-PA 1..452 1..448 2051 83.2 Plus
Dsim\GD25319-PA 447 GD25319-PA 3..429 4..440 680 34.5 Plus
Dsim\GD20798-PA 446 GD20798-PA 3..429 4..440 656 33.6 Plus
Dsim\GD19909-PA 450 GD19909-PA 3..433 4..437 560 31 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17988-PA 455 GJ17988-PA 1..453 1..455 2232 89.9 Plus
Dvir\GJ17947-PA 478 GJ17947-PA 1..459 1..456 2049 82.1 Plus
Dvir\GJ20466-PA 447 GJ20466-PA 3..429 4..440 680 34.5 Plus
Dvir\GJ21592-PA 454 GJ21592-PA 3..438 4..443 658 33.3 Plus
Dvir\GJ23573-PA 446 GJ23573-PA 3..429 4..440 656 33.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23849-PA 458 GK23849-PA 1..455 1..456 2245 89.9 Plus
Dwil\GK24850-PA 472 GK24850-PA 1..457 1..454 2026 80.7 Plus
Dwil\GK15706-PA 447 GK15706-PA 3..429 4..440 680 34.5 Plus
Dwil\GK22203-PA 454 GK22203-PA 3..438 4..443 659 33.3 Plus
Dwil\GK12133-PA 446 GK12133-PA 3..429 4..440 656 33.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12662-PA 457 GE12662-PA 1..457 1..457 2449 98.7 Plus
Dyak\GE18195-PA 475 GE18195-PA 1..452 1..448 2039 82.5 Plus
Dyak\betaTub56D-PA 447 GE13844-PA 3..429 4..440 680 34.5 Plus
Dyak\GE14397-PA 454 GE14397-PA 3..444 4..451 658 33.2 Plus
Dyak\GE24779-PA 446 GE24779-PA 3..429 4..440 656 33.6 Plus

LD32755.hyp Sequence

Translation from 47 to 1420

> LD32755.hyp
MPSEIITLQLGQCGNQIGFEFWKRLCLEHGISPDGVLEDFATDGQDRKDV
FFYQADDNHYIPRAVLIDLEPRVINNIMTSPYSKLYNQENVFLSKHGGGA
GNNWASGFSQGEKVQEEVFDILDREADGSDSLEGFVLCHSIAGGTGSGMG
SYVLERLSERFPKKLIQTYSVFPNQDEISDVVVQPYNSILTLKRLTKCAD
SVVVLDNTALNRIATERLHIQTPTFTQINNLVSTIMSLSTTTLRYPSYMN
NNLIGLTASLIPTPQLHFLMTGYTPLMSDCETKTSVRKTTVLDVMRRLLQ
PKNMMVSALTDKQSRQCFVSILNIIQGEVDPSQVHKSLQRIRERKLANFI
PWGPASIQVALPRSSPYVQSAHKVSGLMMANHTGISSLFKRALAQYDKLR
KRNAFLDNFRRESMFQDDLTELDIARDTVDCLVQEYEAATQIDYPQWSPA
VEASKAG*

LD32755.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
gammaTub37C-PB 457 CG17566-PB 1..457 1..457 2361 100 Plus
gammaTub37C-PA 457 CG17566-PA 1..457 1..457 2361 100 Plus
gammaTub23C-PA 475 CG3157-PA 1..452 1..448 1964 83.2 Plus
betaTub97EF-PC 457 CG4869-PC 3..432 4..443 732 34.9 Plus
betaTub97EF-PB 457 CG4869-PB 3..432 4..443 731 34.5 Plus