Clone LD32860 Report

Search the DGRC for LD32860

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:328
Well:60
Vector:pOT2
Associated Gene/TranscriptCG7745-RA
Protein status:LD32860.pep: gold
Preliminary Size:1963
Sequenced Size:1898

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7745 2001-01-01 Release 2 assignment
CG7745 2001-09-19 Blastp of sequenced clone
CG7745 2003-01-01 Sim4 clustering to Release 3
CG7745 2008-04-29 Release 5.5 accounting
CG7745 2008-08-15 Release 5.9 accounting
CG7745 2008-12-18 5.12 accounting

Clone Sequence Records

LD32860.complete Sequence

1898 bp (1898 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058631

> LD32860.complete
CCTGACATACACCAAAGGCAAATTGGCAGCTGAAAACACGAATTAAACTA
AAATGATGGATGAGCAGCTAATTGACGAGGTAGCGCAGCACGGAGTGATC
TACAACCGGCAGAAGTACTACCTCAACGGCGGCGCCAATGGTGGCAAGTA
CGAGACGAAGGACGAGGCCTGGCAGCTGATTGCGATGAAGCTGCGCACGG
ATGTGGACACGTGCAAGAAGCGGTGGAAGTACCTACGCGAACGCTACGTG
TCGCAGCGGAAGCAGGGCGATCCACCTGTCTACGAACACCTGTCGCGTCC
ATACCTGGAGAAAATGAAGTTCTTGGACCAGCACATCCAGCCGCGCAAGT
CCTACCGCCATGTGCCGAACTTCCTAACATCTCCACAGTCCGCCAACAGC
TCCGGCTACAACGAATACCAGGTTGATAAGTCCAATGGCTCCATGAAGAA
TGTGTCTCAGTTTGGCAGCTCAGGGCAAAGTCATCTTTACCACCAGCCGG
ATCAGCAACACGCAATGAGTGCTCTGAGTAACGTTGCTGCATCTGCGCTG
GAAAACGTCAATGGCCAGGTGAAGATCGAGGCGGACCAGGTGTTCAGGGA
TTTTGCGGCTGCCGTGGCCTCACAGCAGCTCCAGCACATATCACAGTCAC
AAATGCAGCAACAGGCGGCGGCCGTTGCAGCTGTAATGGCTGATTCCTCG
CAAGGTTATCAGGATCAATACAAGGATGGCTCCGTGGGCATGAACGGGGC
CCAGAACAGCGCTGGCAGTCTGACCTCAACATCATCCTCGATGAAATCAC
CGCTGTCGTCGCCGCTGCAAGGAATTGGGGCAGGATCCCATCATCCTCAG
CAGCAGACGCAACAACAACAGCAGCAGCAGCAGCAACAAGCGCAGCAACA
GTCGCCGGCATCTGAACAGCAGCTTCCGGTGGTACATTCCTCTTCCAGCG
CCACGGGCGCTTCCATCGGCAACAGTTCCACTCTGCAGATGCAACAGTCA
CATGTCTATAACCCCAAGGGCGATGGTCTAGACTCTTCGTCATCGAGCCA
TTTCCATATGAAGAAACCCCGTATTCAACTAAATGGCAATGCCCATAACC
AGATGACCAGCAATGGTAGTCACTTTGGCAATGACTCGGACGACGAATCC
GATGAGAACAGCCATGATCTGATGGAGCCGCAGGCTATGATGCAGCAGGA
GAATCACTACAGCAATTCGATGCCCATGCAGCGGGGCAATGGAAATGGGA
ATAACAGTAGCAGCAATAGCGGGAGCAACAATCCCAGCGGCAATAATAGC
CACAACAACCAGCAGCAGCAACAGCACCAGAACATGTTTCCGTCAAACAC
GGACTTCCTTTTCCAGTTATACCAGCAGTTCCCACATCAGGCCAGCAGTT
CGCATCCCGCAAACTTCGGGAAATTCCAGGCGCCGCCCAATCATCCGGGT
GTGCAGCGGTTGTCTGAGCATTTGCTGGGAGAATTAGTCACCACGGAACT
GCTGAAAATGAACAAGGAACGGAAGAAAAGTGCACAGAAACGGATCCTAG
AAATACTATTCTTCGACGATTAAAGGGCTAGCTACTAGGTATTTGTAAAT
AATGTAATCTATTATCCTTAACTTATGTTATTCGTTAGACGGTTGTCAGA
TAATAGTAATTGCATCGCTTTGGTCAAATTTCCCACCAATGAGTCATTTG
CAAAGCTCTACGTTCTACCGAACACTTTTCAAATGTGCTAGTCAAGACCA
GCAATTGGGATTCCATATCTGCATTAATTTATGTTTTTTTATATATGTTT
AAGAATATAATGATCGGTTTTAATTTATTTAAATTCTTATTAAAGTGTAC
TCAATGGAAAAGTGTCTTTCCAATGTGAAAAAAAAAAAAAAAAAAAAA

LD32860.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7745-RA 2016 CG7745-RA 139..2016 1..1878 9390 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7195595..7197269 203..1877 8375 100 Plus
chr2R 21145070 chr2R 7195335..7195537 1..203 1015 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:26:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:12:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11308155..11309833 203..1881 8395 100 Plus
2R 25286936 2R 11307895..11308097 1..203 1015 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11309354..11311032 203..1881 8395 100 Plus
2R 25260384 2R 11309094..11309296 1..203 1015 100 Plus
Blast to na_te.dros performed 2019-03-16 01:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2256..2395 1190..1334 217 68.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6736..6828 1236..1329 206 70.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6678..6795 1208..1329 204 67.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6868 1193..1333 196 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6822 1253..1334 184 72.3 Plus
roo 9092 roo DM_ROO 9092bp 1065..1149 1253..1334 183 71.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2371 1263..1332 160 74.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1519..1576 1274..1329 150 75.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6774 1266..1329 142 75 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2596..2660 1268..1335 135 71 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6753 1293..1329 119 83.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2255..2341 1238..1329 115 67.7 Plus

LD32860.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:13:19 Download gff for LD32860.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7195335..7195537 1..203 100 -> Plus
chr2R 7195596..7196239 204..847 100 == Plus
chr2R 7196316..7196627 924..1235 100 == Plus
chr2R 7196722..7197269 1330..1877 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:14:27 Download gff for LD32860.complete
Subject Subject Range Query Range Percent Splice Strand
CG7745-RA 1..1521 53..1573 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:01:12 Download gff for LD32860.complete
Subject Subject Range Query Range Percent Splice Strand
CG7745-RA 1..1521 53..1573 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:03:41 Download gff for LD32860.complete
Subject Subject Range Query Range Percent Splice Strand
CG7745-RA 1..1521 53..1573 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:31:40 Download gff for LD32860.complete
Subject Subject Range Query Range Percent Splice Strand
CG7745-RA 1..1521 53..1573 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:26:52 Download gff for LD32860.complete
Subject Subject Range Query Range Percent Splice Strand
CG7745-RA 1..1521 53..1573 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:49:00 Download gff for LD32860.complete
Subject Subject Range Query Range Percent Splice Strand
CG7745-RA 12..1888 1..1877 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:01:12 Download gff for LD32860.complete
Subject Subject Range Query Range Percent Splice Strand
CG7745-RA 12..1888 1..1877 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:03:41 Download gff for LD32860.complete
Subject Subject Range Query Range Percent Splice Strand
CG7745-RA 17..1893 1..1877 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:31:40 Download gff for LD32860.complete
Subject Subject Range Query Range Percent Splice Strand
CG7745-RA 12..1888 1..1877 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:26:52 Download gff for LD32860.complete
Subject Subject Range Query Range Percent Splice Strand
CG7745-RA 17..1893 1..1877 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:13:19 Download gff for LD32860.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11307895..11308097 1..203 100 -> Plus
2R 11308156..11309829 204..1877 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:13:19 Download gff for LD32860.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11307895..11308097 1..203 100 -> Plus
2R 11308156..11309829 204..1877 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:13:19 Download gff for LD32860.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11307895..11308097 1..203 100 -> Plus
2R 11308156..11309829 204..1877 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:03:41 Download gff for LD32860.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7195400..7195602 1..203 100 -> Plus
arm_2R 7195661..7197334 204..1877 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:08:13 Download gff for LD32860.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11309094..11309296 1..203 100 -> Plus
2R 11309355..11311028 204..1877 100   Plus

LD32860.pep Sequence

Translation from 52 to 1572

> LD32860.pep
MMDEQLIDEVAQHGVIYNRQKYYLNGGANGGKYETKDEAWQLIAMKLRTD
VDTCKKRWKYLRERYVSQRKQGDPPVYEHLSRPYLEKMKFLDQHIQPRKS
YRHVPNFLTSPQSANSSGYNEYQVDKSNGSMKNVSQFGSSGQSHLYHQPD
QQHAMSALSNVAASALENVNGQVKIEADQVFRDFAAAVASQQLQHISQSQ
MQQQAAAVAAVMADSSQGYQDQYKDGSVGMNGAQNSAGSLTSTSSSMKSP
LSSPLQGIGAGSHHPQQQTQQQQQQQQQQAQQQSPASEQQLPVVHSSSSA
TGASIGNSSTLQMQQSHVYNPKGDGLDSSSSSHFHMKKPRIQLNGNAHNQ
MTSNGSHFGNDSDDESDENSHDLMEPQAMMQQENHYSNSMPMQRGNGNGN
NSSSNSGSNNPSGNNSHNNQQQQQHQNMFPSNTDFLFQLYQQFPHQASSS
HPANFGKFQAPPNHPGVQRLSEHLLGELVTTELLKMNKERKKSAQKRILE
ILFFDD*

LD32860.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12543-PA 510 GF12543-PA 1..510 1..506 1724 82.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20189-PA 504 GG20189-PA 1..504 1..506 2091 94.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21971-PA 509 GH21971-PA 1..509 1..506 1421 65.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7745-PA 506 CG7745-PA 1..506 1..506 2646 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19674-PA 492 GI19674-PA 1..492 1..506 1224 64.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17137-PA 514 GL17137-PA 1..514 1..506 1607 74.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20559-PA 509 GA20559-PA 1..509 1..506 1596 75.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21277-PA 507 GM21277-PA 1..507 1..506 2637 98.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10789-PA 507 GD10789-PA 1..507 1..506 2641 98.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15040-PA 508 GJ15040-PA 1..508 1..506 1427 67.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22190-PA 506 GK22190-PA 1..506 1..506 1214 64.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:47:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12877-PA 503 GE12877-PA 1..503 1..506 2018 94.5 Plus

LD32860.hyp Sequence

Translation from 52 to 1572

> LD32860.hyp
MMDEQLIDEVAQHGVIYNRQKYYLNGGANGGKYETKDEAWQLIAMKLRTD
VDTCKKRWKYLRERYVSQRKQGDPPVYEHLSRPYLEKMKFLDQHIQPRKS
YRHVPNFLTSPQSANSSGYNEYQVDKSNGSMKNVSQFGSSGQSHLYHQPD
QQHAMSALSNVAASALENVNGQVKIEADQVFRDFAAAVASQQLQHISQSQ
MQQQAAAVAAVMADSSQGYQDQYKDGSVGMNGAQNSAGSLTSTSSSMKSP
LSSPLQGIGAGSHHPQQQTQQQQQQQQQQAQQQSPASEQQLPVVHSSSSA
TGASIGNSSTLQMQQSHVYNPKGDGLDSSSSSHFHMKKPRIQLNGNAHNQ
MTSNGSHFGNDSDDESDENSHDLMEPQAMMQQENHYSNSMPMQRGNGNGN
NSSSNSGSNNPSGNNSHNNQQQQQHQNMFPSNTDFLFQLYQQFPHQASSS
HPANFGKFQAPPNHPGVQRLSEHLLGELVTTELLKMNKERKKSAQKRILE
ILFFDD*

LD32860.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7745-PA 506 CG7745-PA 1..506 1..506 2646 100 Plus