Clone LD32873 Report

Search the DGRC for LD32873

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:328
Well:73
Vector:pOT2
Associated Gene/TranscriptCG10777-RB
Protein status:LD32873.pep: gold
Preliminary Size:6585
Sequenced Size:6377

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10777 2001-01-01 Release 2 assignment
CG10777 2001-09-19 Blastp of sequenced clone
CG10777 2003-01-01 Sim4 clustering to Release 3
CG10777 2008-04-29 Release 5.5 accounting
CG10777 2008-08-15 Release 5.9 accounting
CG10777 2008-12-18 5.12 accounting

Clone Sequence Records

LD32873.complete Sequence

6377 bp (6377 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060404

> LD32873.complete
TTCACATGCAACTTTCTGCTGAGCGCGTTTTTTTTTGTTATAAAAATCTA
AAATACAAGAATTAGATTTAGCGAACTGGCTCCTAGTGTTTAACCAAGTA
CACCTTTAGTTAGCATTACGGTTACTTTCCCGTGGCGAAGGAATAATTGC
AAAACCATTAGCTCTCGACAAAAGTTGTGCGAAGCAAAAAGAGAAGTTCG
CGAGAAGAAGACGCCTGTGAGCGTGACGAAGAGAGCCGAGCGAGAGAGTG
AAGAATATCGAATCGAACGGAACAGGGCCTCGAAAGAGAACGTGAAGGAA
ACGGATCGAAAAATCGCAGACTTTGACAACCGAAGAAAAACCCACATTCA
AGACACAAAATTCCGGTTGCCTGAGGGGCAAATGTCAAATTGCGGCGCAT
AAATTACATTAATTTAAAGCTCCCCGCACAAGGCTCATCCAAATTTTCAC
ACATAGGCAGCAGTTGTCGCAACAGAAAAAAGGATTCAGCACACGATGTT
CGCTGGAGCATATGCACCCAACGCTGGGGGCGTTCAGCAGCACACTGGCG
GCGGTTACTATGGCAATGGTGCCGCAGCAGGCGCTGGCGGTAGCGGCAAC
GGGGCCCCACGCCACGAGCGTCAATACTATCCGCGCGGCAATTTCGGCGG
TGCCGCCGGGGGAGCTGGCATCAATGGAGCAGCCACTGCGGCTGGAAGCA
TGCACTTTGGTCAGCCCTATGGCGTGATGACCTATGGCATCCAGAATGGT
CTGGGAATGGGAGCCGCCGGTTCTGGTGGCGGCAATCCGTATCGCCAGCA
AAACGGTGTTGCATTCGCCGGTAATGGACTTGGAGGAGGCGCCGGTGGCG
GATCCGGAGGATCTGGCGGATATGGAGGACAGCGTGGCAAAAATCCAACC
TACGCACAGCGTTATCAGAAGCCGAACAACGGCGCCGGAGTTGCTGGTGG
CTACCAAAGCAATAACTACAATGCTGCCGCCTTAGGCATGCTTTCCAAAG
AGGAGCGCGCCGAGATCCAACGTGAAAAGGCCAAAAATCCCGGCCGAAAT
TTAGTGAAACCCAAGTGGGAGAACCTCGAGCCCTTCCTCAAAGATTTCTA
CAACATTCATCCGAATACACTGGCCAAATCAGAGCAGCAGGTGGCCGAGA
TCCGGCGCGAACTGGAAATCACCGTGTCTGGCAATGAACTACCACACCCG
GTGGTCAGTTTCGAGGAGAGCTCGCTGCCCGCTCACGTCATTGAAGAGAT
GAAGCGCCAGGGATTCACCAAGCCCACTGCTATCCAATCGCAGGGTTGGC
CCATTGCCTTAAGTGGCCGCGATTTGGTGGGCATTGCCCAGACCGGTTCA
GGCAAGACGCTGGCATACATGCTGCCTGCCATCGTGCACATTGGCAATCA
GCCGCCAATAATTCGCGGCGAAGGACCCATTGCTCTAGTGTTGGCCCCCA
CCCGGGAGCTGGCCCAGCAGATCCAATCTGTCGTGCGAGACTATGGACAT
CTGTGCAAGCCAGAGATTCGTCACACTTGCATCTTTGGCGGCTCATCGAA
GGTGCCGCAGGCACGCGATCTTGACCGCGGCGTCGAGGTGATCATCGCCA
CACCAGGACGTCTGATTGATTTCCTTGAGAATCGCAACACTAACTTGCAG
AGATGCACTTATCTGGTGCTGGACGAAGCCGACCGCATGCTGGACATGGG
TTTCGAGCCGCAGATCCGTAAGATCATTGAACAGATTCGTCCCGACCGTC
AGGTGGTCATGTGGTCCGCAACCTGGCCAAAGGAGGTGCAGGCCCTAGCC
GGAGACTTTTTAAACGATTATATCCAAATCAACATTGGTTCGATGAACCT
ATCGGCTAACCACAACATTCGCCAGATTGTCGAGATCTGTACAGAAATAG
AGAAGCCGCAGCGCTTAGTATGCTTGCTCAATGAGATTTCTCCCATCAAG
AATTCGGGAAACAATGGGAACAAAATTATCGTCTTTGTGGAGACCAAGAT
CAAGGTGGAGGACATCTTGCAGATCATTCGAGCCGAGGGTTACAACGCCA
CCTCAATTCACGGCGACAAGACCCAGAATGAGCGTGATTCAGTGCTAAAG
GATTTCCGTAACGGCAAGTCCAACATTCTGATTGCCACCGATGTGGCTTC
GCGCGGCCTCGATGTCGAGGATCTGCAGTACGTAATTAACTATGATTACC
CGAACTCCTCGGAGAACTACGTGCACCGTATCGGGCGCACTGGTCGCTGC
CAGCAGCTGGGAACTGCCTACACATTTTTCACGCCTGACAATGCCAAGCA
GGCCCGTGAACTGATCTCTGTGCTCGAGGAGGCTGGCCAGACGCCGTCGC
AGGCTCTTTTGGATCTTGCTCGTTCGATGCCCAGCTCGGGCGGCTATCGC
GGCAACAAGCGCTGGAACAACAACAGCGGCGGGGATCGCAACACTGGCGG
TAACAACGGCATCTATCAGCAGCGCAACAACAATCCGCTGAATTACCAGG
CCGGTAACAACTATAACAACAATCGCAGCGGCCCCCCAACTGGCAGTAGC
TACCAGCAGTATGCCGCTGGCGGCAATACCTATCTGCAGAATGGTGCTGG
TGGTGGCGTTAATTGGAATCGCATGAACCAGATGGGACAGGATGGAGGAG
CCGGACAACAGCAGCGAAACGGCAACACCTATCGCCCGAGGGCTCCGTTC
AACAATGGCGGACCACGCGCCATTATGGGCCATCAGGGTGGCGGCGTCGG
AGCTGGTGGAGCAGCCGGCGTAGGCGGTGGCCCACAGCAGCTCATGGCAC
CCCAGCAGGGCGGACAGTATATGCCACAAGCATACCGCGGACGTAGCCAG
TTTGTGCCGCAGGGAGCTGGTGCCGGTGGCATGCCGCCACGATTCCAGCA
GTATCCCAAGCGGGAGTACCAGCAACAAGGAGTAACCCACTACGGTCAGC
AGGCTTTGCAGCATCAGCAACAACAGCAGCAGGCTGGCCAACAGACCAAG
CCGCCCAAGGACGAAAGCAACAAGTATGTTCCGTCGGCTGCGGTGACCAG
CTCGCTGGTCCAATACACGCCAGCCAATTCGCCAACGATTGCGGCCGTAG
CTGCTGCCGCTGCAGCAGCCGCCGGACGAGCTGCAGCTGCAGCTGTGGCT
CCGGCTCCCGGTGCCGCCTATATGTACGATGCGGCCGGTGTTCTCACTAC
CGCCGCTGCGCCGGGCACCAATCCATATGCCAACCAGTTCAGCATGCCGG
CCACCTACTATGCCGCCCAACATCACCAGTTCGCCCAAGCCGTGGCAGGA
CCCGGACCAGCACCCGGCCAGGCCATCGAGTAGGCGGGACAACAATACGC
TAACGCGCTCATGGGACGAAATGGAAGTGGATCGTGGAAAGCTACAACAA
CAAAAACAACAAGAACAGCAGCAGCAGCTTTAATAAAATCAACCACATTG
CAAGCAACAACAACTCAAACAACTATAACAACACCAACGACATGGACAAA
TGAATCAACAGTTATCCACATAACACATATAAAATCCAAATGCATATGAT
GATAAATGAACGAATGGATATAATTTTGCCAACATAACAGAGCATAGCAG
CTCTTTAACTTTTGACCAAAATCGTTGCCTTTTTGTTTCTATATTTATTC
ACACCTCACTACTAATATTAGTAGAACATTTGTGTTCTCTTTCGCTTATT
TAAGCATTCGCAATTTTTTGTTTGCGATATTGACAACTAACCTTAAATTC
GTTAATGTTCTCTGGACAAACTGCCGTTAACCATCAATAACAAGGGCCAA
CGCACGAACATCGCCTTCGAAACCCTTTTATGTTTTCCAAACACAAGGTA
AACCGAATCAAAACTCAAGAAAATCCAAAAAGGGAACGATTTTTGTAGTT
TTTAAGCTCTTTCACACACAAATCACACACACACACACCCCGACAGTTGC
ATGTTCTTCGAATGTTTAAAAAGAATTGGGTAGATTATGTTACCAATGTT
ATGTTATATTTTTTCTTAGTATAGCCATTTGGTATATGTTATACTAAGAA
AAAAAAAATGATCCAGGGACAGACACTGTTAATTAATTGATTTTCGAAAA
TTCATGTGTATCAATCTTTACACAAAGCTAAGAACACAAGCACGCAACCA
AAAAACACGAAAATATTGTATTCGAAAATTGTCAAAAACAATGAAAGGCA
TTGAAAGAAAAACCCTTTTCGCTAACTTGGTTGGTATGAAAGGACGGTTT
GCTTATAATAACACATATTTAAATACATTTTTAATTATTTAAATATATAT
ATATATATATATTTAGATATATATATTTATATATATTTTTTTTTCCGAGA
AAATTTTGCAGCAAACAATTACAACAAAGGGAAAACTAACAAAATTCTAC
ACAAATTCCTTTTAAGAAAACGCAGCTAACGGTTGAGATATTTGTATAAT
GTACAACACACATGTTTTGGCCGAATCCAAAATAAGAGAAAAGGGAAATG
GGCAGCGCTGCTTTGGTAGGAAGTATGTTAAATTAAAACTAACAAAACTA
AAACAAGTTACAATCGGTAATAATAAAACGATTATAAAGCAATGGGAGAA
CACGTACACAGCCACATAGAACCCCCACAAGCACACGCACGCACACACAC
ATTGACACTCAACACACACACACAACGAACATCACAATGACAAGCAAATT
TACAGTTATCATTTAATTTCCCATTTTGATACATATACGTGTGTATTCTA
TATATGCTATATATATATTTACATCTATATGTAGATTCGAGCTTGATTTT
CAATGGAGATTAAAACAAAAACTCATTTTGTTGAAGATTTATAGAATTCG
ATAATAATCCCCTAACACAAAAATTCGCATAAATTAACGAGGTTTTTTCA
AAAGTTCTATGCAAATACTTGAAAAAAATTCAATTACAATTTTCAATTAT
TCAAAGACCAAAGAACAGAAGCAGATGAAAATAAGAAGAAAGAAAGCGAA
GAAAAAAGAAAAGACGCCACATTCATCCATAAAAACAATTAAAGCGAACA
CGAAACAAGAGGAAAAGAAGGAGGAACACAAAACAAGGTTAGAAGATCAA
ATAATGCCAAGCAATGCCACACGAAAATAATGATAATAATAATACAGCAA
ACATAATGCATACTTCTGACTATTCCAAAAGCTCTTTTTTTATTTCCCCA
TATCTTATTAATTGATTTGAAAATCATTTTGATTTGCATTATTAATTTCT
CTCTCTTCCGAATACTTTTGGCCAGAGTTCAGGACGAGTAAATTAGTAGT
AGTAACATTAATTGGCAGCTCCAGTCATATAGTTAGCAGTAATATATCCA
TATATCGTCTGTTCAAGCAGTTGTCCATGTTGTTGCAAGCAGTGCGTTAT
CCTCGCCACGGGAAAGCAGTACAAAAATCCGAAGAATTTTGGGAAAACGT
AACGGACACAAGGGAATATTCTACAGTGGAATTGTATGAGAACAAGAACA
CAAGGAAAATATATGAAAAGTCATGTAGATTATATTAGAAATATATTTGT
TAGCCGATCGGGGGGTGTGAAAGAAACATTTTTGTTAATTTTTTTTGTAT
AAGTTCTCTACGTATACGGTTTCTTTTTAGCAAATAAATAAAAATCGGGG
AAAACAAACGGAAATATTTATATATGTAGGGTATATCGTCAACACAAGGA
TCTCTTTTTAAAGCAAACGAACGGAAGACTCGAATTCTTCTATATAGACC
TATAATTCATAGAGAAGCTCGCTTTTATTTCATTTCATATTGGTAGATTT
CTCATACATTTTGAAAATCATTGGAGACGGGATTCGAAAACTACAACTAA
AAAATGTTTTTTTTTTTATCTACTCAAGGGGTATACACAAAGTTACCAGT
GAATTAACGTATTTATTTTTATAATTGCATACTTCGTAATTATGATTTTG
ATGCAACCGAATTGTGATGATGTGATAGACTTATATAAACAAACGAAAAT
ACAAAAATACTAATTAATAACCAATTTAAATGAAGTAATCGCAGTGCCCC
CAAAAAGGCCAGGCCAAAAACACTGAAACTGAAGCAGAGGCAGCTGAAAC
TGAAGCTGAATCTGAATCGAAATCAGTATCTGAATCAGAAGAGGAATATG
AATATATGTTATGTATTTGTATTATTGTCGTTGTCGTTGTCGCTCATAGA
CAATGTCTGATGGCTAAAATATAATGTATTATGGATGACTTGAGGCATAC
ATTCTTTTTTTGAAGAAATAAAACTATAGAACGCGATATTTGTATTGTAT
TTATCTATAAGTTGTTGTGTACACACTGCGAAAAACAAACAAACCAAACA
ACAAACTAAAAAAAAAAAAAAAAAAAA

LD32873.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG10777-RB 6490 CG10777-RB 62..6438 1..6377 31855 99.9 Plus
nc_22445.a 579 nc_22445.a 26..508 1..483 2415 100 Plus
CG10077.c 3505 CG10077.c 964..1230 1523..1789 480 78.6 Plus
nc_22445.a 579 nc_22445.a 505..579 2002..2076 375 100 Plus
CG10077.c 3505 CG10077.c 705..838 1258..1391 250 79.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:12:49
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 7816028..7818595 6357..3796 12595 99.6 Minus
chrX 22417052 chrX 7818660..7820457 3796..1999 8975 99.9 Minus
chrX 22417052 chrX 7820686..7822212 2007..481 7635 100 Minus
chrX 22417052 chrX 7822768..7823250 483..1 2415 100 Minus
chr3L 24539361 chr3L 6946421..6946946 1789..1258 585 74.4 Minus
chr3R 27901430 chr3R 1829681..1829980 1875..1576 420 76 Minus
chr3R 27901430 chr3R 3950293..3950389 1656..1752 275 85.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:26:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7924119..7926700 6377..3796 12880 99.9 Minus
X 23542271 X 7926765..7928562 3796..1999 8975 99.9 Minus
X 23542271 X 7928791..7930317 2007..481 7635 100 Minus
X 23542271 X 7930873..7931355 483..1 2415 100 Minus
3L 28110227 3L 6954130..6954655 1789..1258 555 74.1 Minus
3R 32079331 3R 6004055..6004354 1875..1576 420 76 Minus
3R 32079331 3R 8124262..8124358 1656..1752 275 85.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:17:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 7932217..7934798 6377..3796 12880 99.9 Minus
X 23527363 X 7934863..7936660 3796..1999 8975 99.9 Minus
X 23527363 X 7936889..7938415 2007..481 7635 100 Minus
X 23527363 X 7938971..7939453 483..1 2415 100 Minus
3L 28103327 3L 6947230..6947496 1789..1523 480 78.6 Minus
3R 31820162 3R 5744886..5745122 1875..1639 390 77.6 Minus
3R 31820162 3R 7865093..7865189 1656..1752 275 85.5 Plus
3L 28103327 3L 6947622..6947755 1391..1258 250 79.1 Minus
3R 31820162 3R 5745280..5745338 1475..1417 175 86.4 Minus
3R 31820162 3R 5744518..5744552 2147..2113 145 94.2 Minus
Blast to na_te.dros performed 2019-03-16 01:12:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2320..2444 3390..3514 247 66.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2381..2501 3388..3511 227 68.5 Plus
roo 9092 roo DM_ROO 9092bp 1061..1234 3395..3561 223 63.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6824..6969 3395..3541 219 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6750..6874 3390..3511 203 64.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6729..6847 3390..3511 198 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6783..6907 3390..3511 186 62.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2892 2896..3482 178 53.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6844 2892..3023 178 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6771..6898 3390..3511 176 62.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6684..6810 3369..3492 168 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2444..2540 3406..3499 163 64.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6764..6957 2896..3083 161 58.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6944 2917..3143 160 55.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2587..2814 2915..3143 159 58.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2376..2645 2400..2681 156 55.9 Plus
roo 9092 roo DM_ROO 9092bp 1110..1278 3390..3559 154 59.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2812..2947 3390..3523 153 59.1 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3298..3433 3390..3540 153 61.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2606..2720 3388..3505 148 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2503 2412..2591 147 59.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1529..1670 3388..3527 145 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6799..7067 2883..3148 145 55.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6879 2896..2981 143 69.3 Plus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1018..1215 5270..5080 142 57.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2482..2603 3390..3511 141 60.5 Plus
roo 9092 roo DM_ROO 9092bp 1060..1134 2907..2981 140 68.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2778..2960 2382..2555 138 55.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6739..6938 2958..3155 138 55.4 Plus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1041..1159 5195..5080 137 60.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6831..6913 2897..2982 133 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2481..2563 3398..3485 130 65.9 Plus
roo 9092 roo DM_ROO 9092bp 1056..1144 2894..2982 129 64.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2308..2526 2909..3143 127 57.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2455 2896..3022 126 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2327..2389 2958..3022 122 67.7 Plus

LD32873.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:13:25 Download gff for LD32873.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 7816056..7817597 4787..6329 99 == Minus
chrX 7817656..7818055 4337..4728 89 == Minus
chrX 7818128..7818594 3797..4264 99 <- Minus
chrX 7818660..7818963 3493..3796 100 == Minus
chrX 7819063..7820451 2005..3393 100 <- Minus
chrX 7820689..7822210 483..2004 100 <- Minus
chrX 7822769..7823250 1..482 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:14:28 Download gff for LD32873.complete
Subject Subject Range Query Range Percent Splice Strand
CG10777-RB 1..2838 496..3333 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:58:13 Download gff for LD32873.complete
Subject Subject Range Query Range Percent Splice Strand
CG10777-RB 1..2838 496..3333 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:03:51 Download gff for LD32873.complete
Subject Subject Range Query Range Percent Splice Strand
CG10777-RB 1..2838 496..3333 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:41:23 Download gff for LD32873.complete
Subject Subject Range Query Range Percent Splice Strand
CG10777-RB 1..2838 496..3333 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:27:08 Download gff for LD32873.complete
Subject Subject Range Query Range Percent Splice Strand
CG10777-RB 1..2838 496..3333 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:12:41 Download gff for LD32873.complete
Subject Subject Range Query Range Percent Splice Strand
CG10777-RB 1..6357 1..6357 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:58:12 Download gff for LD32873.complete
Subject Subject Range Query Range Percent Splice Strand
CG10777-RB 1..6357 1..6357 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:03:51 Download gff for LD32873.complete
Subject Subject Range Query Range Percent Splice Strand
CG10777-RB 28..6384 1..6357 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:41:23 Download gff for LD32873.complete
Subject Subject Range Query Range Percent Splice Strand
CG10777-RB 1..6357 1..6357 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:27:08 Download gff for LD32873.complete
Subject Subject Range Query Range Percent Splice Strand
CG10777-RB 28..6384 1..6357 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:13:25 Download gff for LD32873.complete
Subject Subject Range Query Range Percent Splice Strand
X 7924139..7926699 3797..6357 100 <- Minus
X 7926765..7928556 2005..3796 100 <- Minus
X 7928794..7930315 483..2004 100 <- Minus
X 7930874..7931355 1..482 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:13:25 Download gff for LD32873.complete
Subject Subject Range Query Range Percent Splice Strand
X 7924139..7926699 3797..6357 100 <- Minus
X 7926765..7928556 2005..3796 100 <- Minus
X 7928794..7930315 483..2004 100 <- Minus
X 7930874..7931355 1..482 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:13:25 Download gff for LD32873.complete
Subject Subject Range Query Range Percent Splice Strand
X 7924139..7926699 3797..6357 100 <- Minus
X 7926765..7928556 2005..3796 100 <- Minus
X 7928794..7930315 483..2004 100 <- Minus
X 7930874..7931355 1..482 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:03:51 Download gff for LD32873.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7818172..7820732 3797..6357 100 <- Minus
arm_X 7820798..7822589 2005..3796 100 <- Minus
arm_X 7822827..7824348 483..2004 100 <- Minus
arm_X 7824907..7825388 1..482 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:24:30 Download gff for LD32873.complete
Subject Subject Range Query Range Percent Splice Strand
X 7932237..7934797 3797..6357 100 <- Minus
X 7934863..7936654 2005..3796 100 <- Minus
X 7936892..7938413 483..2004 100 <- Minus
X 7938972..7939453 1..482 100   Minus

LD32873.pep Sequence

Translation from 495 to 3332

> LD32873.pep
MFAGAYAPNAGGVQQHTGGGYYGNGAAAGAGGSGNGAPRHERQYYPRGNF
GGAAGGAGINGAATAAGSMHFGQPYGVMTYGIQNGLGMGAAGSGGGNPYR
QQNGVAFAGNGLGGGAGGGSGGSGGYGGQRGKNPTYAQRYQKPNNGAGVA
GGYQSNNYNAAALGMLSKEERAEIQREKAKNPGRNLVKPKWENLEPFLKD
FYNIHPNTLAKSEQQVAEIRRELEITVSGNELPHPVVSFEESSLPAHVIE
EMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVHIG
NQPPIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGS
SKVPQARDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLD
MGFEPQIRKIIEQIRPDRQVVMWSATWPKEVQALAGDFLNDYIQINIGSM
NLSANHNIRQIVEICTEIEKPQRLVCLLNEISPIKNSGNNGNKIIVFVET
KIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSNILIATDV
ASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNA
KQARELISVLEEAGQTPSQALLDLARSMPSSGGYRGNKRWNNNSGGDRNT
GGNNGIYQQRNNNPLNYQAGNNYNNNRSGPPTGSSYQQYAAGGNTYLQNG
AGGGVNWNRMNQMGQDGGAGQQQRNGNTYRPRAPFNNGGPRAIMGHQGGG
VGAGGAAGVGGGPQQLMAPQQGGQYMPQAYRGRSQFVPQGAGAGGMPPRF
QQYPKREYQQQGVTHYGQQALQHQQQQQQAGQQTKPPKDESNKYVPSAAV
TSSLVQYTPANSPTIAAVAAAAAAAAGRAAAAAVAPAPGAAYMYDAAGVL
TTAAAPGTNPYANQFSMPATYYAAQHHQFAQAVAGPGPAPGQAIE*

LD32873.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:59:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20995-PA 996 GF20995-PA 1..975 1..929 3197 77.5 Plus
Dana\GF10884-PA 822 GF10884-PA 89..537 177..634 1484 60.9 Plus
Dana\GF18634-PA 704 GF18634-PA 221..650 191..626 1437 61.7 Plus
Dana\GF24750-PA 613 GF24750-PA 69..501 191..627 1394 61 Plus
Dana\GF16725-PA 693 GF16725-PA 208..647 190..625 946 43.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17597-PA 955 GG17597-PA 1..950 1..945 3838 91.8 Plus
Dere\GG15018-PA 824 GG15018-PA 95..543 177..634 1489 60.9 Plus
Dere\GG10666-PA 720 GG10666-PA 236..665 191..626 1430 61.5 Plus
Dere\GG23261-PA 709 GG23261-PA 230..680 190..636 942 41 Plus
Dere\GG13958-PA 786 GG13958-PA 225..646 195..625 903 41.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24775-PA 977 GH24775-PA 1..972 1..945 2968 69.5 Plus
Dgri\GH22580-PA 793 GH22580-PA 102..552 193..661 1494 61.4 Plus
Dgri\GH14289-PA 746 GH14289-PA 254..683 191..626 1430 61.2 Plus
Dgri\GH18325-PA 684 GH18325-PA 107..643 86..621 909 39.5 Plus
Dgri\GH17046-PA 811 GH17046-PA 250..705 195..653 889 41.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
mahe-PC 945 CG10777-PC 1..945 1..945 4996 100 Plus
mahe-PB 945 CG10777-PB 1..945 1..945 4996 100 Plus
CG10077-PD 818 CG10077-PD 3..804 78..898 1609 46.1 Plus
CG10077-PA 818 CG10077-PA 3..804 78..898 1609 46.1 Plus
Rm62-PH 575 CG10279-PH 11..546 93..652 1447 53.4 Plus
Rm62-PI 578 CG10279-PI 14..549 93..652 1447 53.4 Plus
Rm62-PF 578 CG10279-PF 14..549 93..652 1447 53.4 Plus
Rm62-PE 578 CG10279-PE 14..549 93..652 1447 53.4 Plus
Rm62-PA 719 CG10279-PA 155..690 93..652 1447 53.4 Plus
Rm62-PB 578 CG10279-PB 14..549 93..652 1447 53.4 Plus
Rm62-PD 575 CG10279-PD 11..546 93..652 1447 53.4 Plus
Rm62-PC 578 CG10279-PC 14..549 93..652 1447 53.4 Plus
CG10077-PC 472 CG10077-PC 3..468 78..555 1244 54.1 Plus
Rm62-PK 485 CG10279-PK 11..451 93..556 1203 53.9 Plus
Rm62-PL 473 CG10279-PL 11..453 93..558 1201 53.4 Plus
Rm62-PM 478 CG10279-PM 11..451 93..556 1199 53.6 Plus
Rm62-PJ 458 CG10279-PJ 11..450 93..555 1197 53.8 Plus
CG7878-PA 703 CG7878-PA 158..703 128..667 937 37.9 Plus
CG6418-PB 791 CG6418-PB 178..716 153..693 889 36.6 Plus
bel-PB 801 CG9748-PB 44..786 4..762 887 32.3 Plus
bel-PA 798 CG9748-PA 44..783 4..762 884 32.3 Plus
CG6227-PA 1224 CG6227-PA 468..880 196..614 850 43.3 Plus
vas-PC 661 CG46283-PC 37..653 23..661 816 32.4 Plus
vas-PB 661 CG46283-PB 37..653 23..661 816 32.4 Plus
vas-PA 661 CG46283-PA 37..653 23..661 816 32.4 Plus
CG10333-PA 822 CG10333-PA 290..775 133..600 745 36 Plus
abs-PA 619 CG14637-PA 152..530 212..593 728 42.1 Plus
CG14443-PB 736 CG14443-PB 268..714 178..625 641 32.9 Plus
eIF4A-PF 403 CG9075-PF 31..384 238..606 557 34.4 Plus
eIF4A-PE 403 CG9075-PE 31..384 238..606 557 34.4 Plus
eIF4A-PD 403 CG9075-PD 31..384 238..606 557 34.4 Plus
eIF4A-PB 403 CG9075-PB 31..384 238..606 557 34.4 Plus
eIF4A-PC 403 CG9075-PC 31..384 238..606 557 34.4 Plus
eIF4A-PA 403 CG9075-PA 31..384 238..606 557 34.4 Plus
CG7483-PA 399 CG7483-PA 25..380 236..606 540 34.5 Plus
CG9253-PA 507 CG9253-PA 84..489 260..670 517 32.3 Plus
CG32344-PA 827 CG32344-PA 41..396 239..606 491 31.8 Plus
CG5589-PA 594 CG5589-PA 87..513 209..638 489 30.2 Plus
me31B-PB 428 CG4916-PB 29..425 239..653 488 30.9 Plus
me31B-PA 459 CG4916-PA 60..456 239..653 488 30.9 Plus
Rs1-PB 782 CG2173-PB 149..523 226..611 482 34.3 Plus
Rs1-PA 782 CG2173-PA 149..523 226..611 482 34.3 Plus
pit-PC 680 CG6375-PC 199..526 249..584 481 32.9 Plus
pit-PA 680 CG6375-PA 199..526 249..584 481 32.9 Plus
pit-PB 680 CG6375-PB 199..526 249..584 481 32.9 Plus
CG8611-PC 828 CG8611-PC 352..769 261..606 446 30.1 Plus
CG8611-PA 974 CG8611-PA 351..768 261..606 446 30.1 Plus
CG8611-PB 975 CG8611-PB 352..769 261..606 446 30.1 Plus
Hel25E-PB 424 CG7269-PB 43..392 239..599 409 27.9 Plus
Hel25E-PA 424 CG7269-PA 43..392 239..599 409 27.9 Plus
Hel25E-PC 424 CG7269-PC 43..392 239..599 409 27.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14822-PA 963 GI14822-PA 1..958 1..945 3082 72.6 Plus
Dmoj\GI12369-PA 794 GI12369-PA 99..549 193..662 1490 60.9 Plus
Dmoj\GI23184-PA 724 GI23184-PA 231..660 191..626 1409 60.8 Plus
Dmoj\GI12524-PA 602 GI12524-PA 56..494 183..627 1393 59.6 Plus
Dmoj\GI23306-PA 702 GI23306-PA 229..664 190..621 897 43.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15249-PA 688 GL15249-PA 1..671 252..933 2484 76.4 Plus
Dper\GL23489-PA 649 GL23489-PA 160..589 191..626 1409 61.2 Plus
Dper\GL16096-PA 554 GL16096-PA 50..504 185..626 1317 56.2 Plus
Dper\GL13229-PA 455 GL13229-PA 78..453 175..555 1229 60.8 Plus
Dper\GL24257-PA 703 GL24257-PA 242..660 190..636 891 41 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10556-PA 939 GA10556-PA 1..922 1..933 3285 77.5 Plus
Dpse\GA28589-PA 799 GA28589-PA 78..525 175..627 1465 60.4 Plus
Dpse\GA10214-PA 738 GA10214-PA 251..680 191..626 1413 61.2 Plus
Dpse\GA28491-PA 537 GA28491-PA 50..485 185..624 1377 59.3 Plus
Dpse\GA20653-PB 692 GA20653-PB 199..649 190..636 945 43 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11962-PA 946 GM11962-PA 1..946 1..945 4791 96.7 Plus
Dsec\GM10578-PA 724 GM10578-PA 240..669 191..626 1435 61.5 Plus
Dsec\GM13808-PA 672 GM13808-PA 97..398 309..634 1033 60.4 Plus
Dsec\GM23704-PA 699 GM23704-PA 215..665 190..636 936 41.6 Plus
Dsec\GM24798-PA 786 GM24798-PA 224..676 195..660 909 40.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16140-PA 800 GD16140-PA 1..794 1..793 4070 97.5 Plus
Dsim\GD13105-PA 814 GD13105-PA 95..540 177..634 1475 60.4 Plus
Dsim\GD18514-PA 713 GD18514-PA 229..679 190..636 936 41.4 Plus
Dsim\GD17585-PA 786 GD17585-PA 224..676 195..660 907 40.2 Plus
Dsim\GD23992-PA 547 GD23992-PA 119..509 225..624 764 39.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19487-PA 953 GJ19487-PA 1..948 1..945 3100 73.1 Plus
Dvir\GJ12262-PA 778 GJ12262-PA 86..542 183..646 1491 60.9 Plus
Dvir\GJ14499-PA 733 GJ14499-PA 237..666 191..626 1429 61.5 Plus
Dvir\GJ16043-PA 605 GJ16043-PA 74..494 191..615 1350 60.4 Plus
Dvir\GJ24162-PA 710 GJ24162-PA 240..680 190..626 958 44.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16276-PA 950 GK16276-PA 1..945 1..945 3253 75.8 Plus
Dwil\GK12550-PA 800 GK12550-PA 78..522 183..635 1484 61.5 Plus
Dwil\GK14214-PA 745 GK14214-PA 259..688 191..626 1416 61 Plus
Dwil\GK14378-PA 683 GK14378-PA 203..642 190..625 917 42.2 Plus
Dwil\GK13754-PA 839 GK13754-PA 259..680 195..625 881 41.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17497-PA 962 GE17497-PA 1..957 1..945 3822 90.2 Plus
Dyak\GE20460-PA 818 GE20460-PA 94..542 177..634 1491 60.9 Plus
Dyak\GE24123-PA 719 GE24123-PA 238..667 191..626 1437 61.7 Plus
Dyak\GE25850-PA 688 GE25850-PA 209..659 190..636 938 41 Plus
Dyak\GE20258-PA 789 GE20258-PA 227..658 195..638 895 41.1 Plus

LD32873.hyp Sequence

Translation from 495 to 3332

> LD32873.hyp
MFAGAYAPNAGGVQQHTGGGYYGNGAAAGAGGSGNGAPRHERQYYPRGNF
GGAAGGAGINGAATAAGSMHFGQPYGVMTYGIQNGLGMGAAGSGGGNPYR
QQNGVAFAGNGLGGGAGGGSGGSGGYGGQRGKNPTYAQRYQKPNNGAGVA
GGYQSNNYNAAALGMLSKEERAEIQREKAKNPGRNLVKPKWENLEPFLKD
FYNIHPNTLAKSEQQVAEIRRELEITVSGNELPHPVVSFEESSLPAHVIE
EMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVHIG
NQPPIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGS
SKVPQARDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLD
MGFEPQIRKIIEQIRPDRQVVMWSATWPKEVQALAGDFLNDYIQINIGSM
NLSANHNIRQIVEICTEIEKPQRLVCLLNEISPIKNSGNNGNKIIVFVET
KIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSNILIATDV
ASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNA
KQARELISVLEEAGQTPSQALLDLARSMPSSGGYRGNKRWNNNSGGDRNT
GGNNGIYQQRNNNPLNYQAGNNYNNNRSGPPTGSSYQQYAAGGNTYLQNG
AGGGVNWNRMNQMGQDGGAGQQQRNGNTYRPRAPFNNGGPRAIMGHQGGG
VGAGGAAGVGGGPQQLMAPQQGGQYMPQAYRGRSQFVPQGAGAGGMPPRF
QQYPKREYQQQGVTHYGQQALQHQQQQQQAGQQTKPPKDESNKYVPSAAV
TSSLVQYTPANSPTIAAVAAAAAAAAGRAAAAAVAPAPGAAYMYDAAGVL
TTAAAPGTNPYANQFSMPATYYAAQHHQFAQAVAGPGPAPGQAIE*

LD32873.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10777-PC 945 CG10777-PC 1..945 1..945 4996 100 Plus
CG10777-PB 945 CG10777-PB 1..945 1..945 4996 100 Plus
CG10077-PD 818 CG10077-PD 3..804 78..898 1609 46.1 Plus
CG10077-PA 818 CG10077-PA 3..804 78..898 1609 46.1 Plus
Rm62-PH 575 CG10279-PH 11..546 93..652 1447 53.4 Plus