Clone LD32918 Report

Search the DGRC for LD32918

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:329
Well:18
Vector:pOT2
Associated Gene/TranscriptCG10217-RA
Protein status:LD32918.pep: gold
Sequenced Size:2261

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10217 2003-01-01 Sim4 clustering to Release 3
CG10217 2008-04-29 Release 5.5 accounting
CG10217 2008-04-29 Picked prior to 5.5
CG10217 2008-08-15 Release 5.9 accounting
CG10217 2008-12-18 5.12 accounting

Clone Sequence Records

LD32918.complete Sequence

2261 bp assembled on 2008-06-05

GenBank Submission: BT033061

> LD32918.complete
GTAATTTGTGTTTGTTGCGTGTTTTGCTATTGTTTCTGACTAAAACCGCC
TTTGGTTGCTTCCATTTGAAAGTAAATTGTAATAAATATGTTTAGTTGTT
AGTTCTGAGGACACCAAACACGCAATGCATTATTACCTGGCTGCTATCTG
CCTGGTGGGCTTAATGGGCTCAGCCCTCGGTCAGTACAACCTGGTGCAGA
AGGACAACTGCATCATTCCAAAGATCCTGCAGGGATCGTGGTTCTCGTGG
GAAACGGGCCTGCCCACGCTGACGGTGATCGACGCCACCTCGATGTCCAG
CCGAGGCTACTGCATCAACTACATGCGCCACAAGGGCGACGAGTACTCAT
TTGTCTTCAAGGAGCGATCCAAGGACTGCTATCACTGTGTCAGGACCATC
ATCCGCACCCTTAATGTGTTCGAAAAGTTTGAGGGGCCCTGCGTGGGCAT
ACCCGCTGGACAGGAACCCACCGTGGACTATGTGTGTCGTGGTGTTAAGG
ATGACCAGCAGTTGATAACGCTCTTTAACGAGAACTTTGTGCCCATCAAC
TGCCGATCGTCGCTGGAGGGAGTGTGGCATTTTACGTACCAGAACCGATT
CCGATTCACGGGCGTATGCGATAAGCCCGACGCTCGCATTCAGTCCTGTC
AAACGGCAGGAACGCAGTTCCTCATCCAGAACCAGAAGTTCAACGTCACC
TATCAGCAGTGCGAGGGTATGGAGGGCACATTCACCGGCACCGTGGAGTT
CAGCTGCCTGGGCGATTGGTTTGTGGGCAAGAACCACTACTTTGCCGTGG
CCAACACAAAGGAGTCGCGTAAGGATGAGAAGTACCGCTGCTTCCTTAAG
AATCGTGACGATGATCTTTACGTGGGCGTTTCCATTACGGCCGAATGTAA
CACACTGAAGACGCCAGAAACGTCACCGGAGCGTCTAAAGCTGACGCCAG
TGAAGGCTGAGTTTGTGGAACCCGGTTGCACGCTACCACAAAACTTTAGC
GGAGAATGGGTGAACACTGCCAACATTGATGCCGATGTCTCGATCAGTGA
GACCCACATAAACGAGACGTACTATCCGGATAAAGCTCGATACCGAAAGA
CAATCTATGTTTGCCGAGAGCGACGGGGTAATCGTGTGATGATGGCTCGC
CTCACTGTCGACGGTTGCCAGAAGGATTACGTGTGCTTTGACTTTATGCC
CCGCCACCACAACATCATTCGCTACCGCAAGGGTTTGGCTGTGATCAAGG
ACGATTTTAGTACAGTCTGCTCTTGGGTTCAGTTCCCCAATTCGGAGGCA
TGGAAATATGATCTGTTTCTTGCTCGAAATCCTGTGCCTGTTCGTTGCCC
CGTTGCGGGAAAATTCAACTTTACGCAGCGAGGAGAGCATCCCTTCAGAA
CGAGAATTCTTGGTGGTGTCACTCTGAGTCCGCGTCCCGATATCCATTGC
AAGCAAAACATCTCGGATTTATCGGTTTGCGATACAGATCAAAAGGAATT
GGCGGTGGATGAAAACTATTGCCTGTCGGTGGATCACTTGGGTCGTCCCG
TTGATATCTACAGTGATCCCGATTACCGCATGAAGTGCATTGGCTTCTGG
AAGGAGAACCTCAAGTCCTACCTGATTACGTACGACGATTTGGATCCGCT
GTCCAAGTATCGCTGCTGGGTCTATCAGCGTGCCGACCTCAACCGTGTCC
TCATGTCGCAGGCTGTGGGCGCATTCTGCAAACTGGAGCAAGATGTGACC
TCGTGGAACCACTCGGAGGGCGCTGCCGTAGCCATCGATGCCGTGGAGTA
CGAAAGGGAGCGTGACGACTGTCCCATGCACTTCGATGACGGATTGAATC
CTTGGAAGCCGTCGGATGCCTCCAACATCATATTTGATTGGGACTTTTAC
CGAGCAGGAGCAGCGACACTAAAATTTCAACTGACTGGCCTCGTTATCGT
GGTCTTAGTCCAGGTTAGGAGTTTATTAGCTTAATAATATCAAAAGTATT
TTTTAACTATTCCATCCAACGAAATTTACAAAAATTTTACAACCAACATA
AAGTCACTTTTAGGAGCAATTGCGTGCCTTAGAATGCGAATTTTAGAAAG
TTTTAAGCAAATTTTAAACTTAGTTTGTAAGATCATCACAATTTTTACGT
GTAACAGCCATTCCGTCCCAAACGAATCTCAAATGTATTGTGCAAATAAT
TAAAGCAGTTAAATAAATGCCTTGAACTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA

LD32918.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10217.a 2492 CG10217.a 233..2463 1..2231 11155 100 Plus
CG10217-RA 2346 CG10217-RA 69..2299 1..2231 11155 100 Plus
CG10217-RB 2202 CG10217-RB 69..2202 95..2228 10670 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:15:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19584145..19584970 2228..1403 4115 99.9 Minus
chr3R 27901430 chr3R 19585027..19585840 1404..591 4055 99.9 Minus
chr3R 27901430 chr3R 19585957..19586378 592..171 2095 99.8 Minus
chr3R 27901430 chr3R 19586465..19586637 173..1 850 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:26:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23760734..23761562 2231..1403 4145 100 Minus
3R 32079331 3R 23761619..23762432 1404..591 4070 100 Minus
3R 32079331 3R 23762549..23762970 592..171 2110 100 Minus
3R 32079331 3R 23763057..23763229 173..1 865 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23501565..23502393 2231..1403 4145 100 Minus
3R 31820162 3R 23502450..23503263 1404..591 4070 100 Minus
3R 31820162 3R 23503380..23503801 592..171 2110 100 Minus
3R 31820162 3R 23503888..23504060 173..1 865 100 Minus
Blast to na_te.dros performed 2019-03-15 23:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
G5A 2841 G5A G5A 2841bp 50..96 372..323 116 76 Minus

LD32918.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:16:57 Download gff for LD32918.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19584145..19584968 1405..2228 99 <- Minus
chr3R 19585027..19585838 593..1404 99 <- Minus
chr3R 19585957..19586375 174..592 99 <- Minus
chr3R 19586465..19586637 1..173 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:14:31 Download gff for LD32918.complete
Subject Subject Range Query Range Percent Splice Strand
CG10217-RB 1..1860 125..1984 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:04:45 Download gff for LD32918.complete
Subject Subject Range Query Range Percent Splice Strand
CG10217-RB 1..1860 125..1984 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:35:20 Download gff for LD32918.complete
Subject Subject Range Query Range Percent Splice Strand
CG10217-RA 1..1860 125..1984 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:52:27 Download gff for LD32918.complete
Subject Subject Range Query Range Percent Splice Strand
CG10217-RB 1..1860 125..1984 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:26:27 Download gff for LD32918.complete
Subject Subject Range Query Range Percent Splice Strand
CG10217-RA 1..1860 125..1984 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:27:57 Download gff for LD32918.complete
Subject Subject Range Query Range Percent Splice Strand
CG10217-RA 1..2228 1..2228 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:04:45 Download gff for LD32918.complete
Subject Subject Range Query Range Percent Splice Strand
CG10217-RA 1..2228 1..2228 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:35:20 Download gff for LD32918.complete
Subject Subject Range Query Range Percent Splice Strand
CG10217-RA 35..2262 1..2228 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:52:27 Download gff for LD32918.complete
Subject Subject Range Query Range Percent Splice Strand
CG10217-RA 1..2228 1..2228 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:26:27 Download gff for LD32918.complete
Subject Subject Range Query Range Percent Splice Strand
CG10217-RA 35..2262 1..2228 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:16:57 Download gff for LD32918.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23760737..23761560 1405..2228 100 <- Minus
3R 23761619..23762430 593..1404 100 <- Minus
3R 23762549..23762967 174..592 100 <- Minus
3R 23763057..23763229 1..173 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:16:57 Download gff for LD32918.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23760737..23761560 1405..2228 100 <- Minus
3R 23761619..23762430 593..1404 100 <- Minus
3R 23762549..23762967 174..592 100 <- Minus
3R 23763057..23763229 1..173 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:16:57 Download gff for LD32918.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23760737..23761560 1405..2228 100 <- Minus
3R 23761619..23762430 593..1404 100 <- Minus
3R 23762549..23762967 174..592 100 <- Minus
3R 23763057..23763229 1..173 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:35:20 Download gff for LD32918.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19586459..19587282 1405..2228 100 <- Minus
arm_3R 19587341..19588152 593..1404 100 <- Minus
arm_3R 19588271..19588689 174..592 100 <- Minus
arm_3R 19588779..19588951 1..173 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:33:13 Download gff for LD32918.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23501568..23502391 1405..2228 100 <- Minus
3R 23502450..23503261 593..1404 100 <- Minus
3R 23503380..23503798 174..592 100 <- Minus
3R 23503888..23504060 1..173 100   Minus

LD32918.pep Sequence

Translation from 124 to 1983

> LD32918.pep
MHYYLAAICLVGLMGSALGQYNLVQKDNCIIPKILQGSWFSWETGLPTLT
VIDATSMSSRGYCINYMRHKGDEYSFVFKERSKDCYHCVRTIIRTLNVFE
KFEGPCVGIPAGQEPTVDYVCRGVKDDQQLITLFNENFVPINCRSSLEGV
WHFTYQNRFRFTGVCDKPDARIQSCQTAGTQFLIQNQKFNVTYQQCEGME
GTFTGTVEFSCLGDWFVGKNHYFAVANTKESRKDEKYRCFLKNRDDDLYV
GVSITAECNTLKTPETSPERLKLTPVKAEFVEPGCTLPQNFSGEWVNTAN
IDADVSISETHINETYYPDKARYRKTIYVCRERRGNRVMMARLTVDGCQK
DYVCFDFMPRHHNIIRYRKGLAVIKDDFSTVCSWVQFPNSEAWKYDLFLA
RNPVPVRCPVAGKFNFTQRGEHPFRTRILGGVTLSPRPDIHCKQNISDLS
VCDTDQKELAVDENYCLSVDHLGRPVDIYSDPDYRMKCIGFWKENLKSYL
ITYDDLDPLSKYRCWVYQRADLNRVLMSQAVGAFCKLEQDVTSWNHSEGA
AVAIDAVEYERERDDCPMHFDDGLNPWKPSDASNIIFDWDFYRAGAATLK
FQLTGLVIVVLVQVRSLLA*

LD32918.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:56:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18740-PA 619 GF18740-PA 1..618 1..619 3118 91.8 Plus
Dana\GF17258-PA 1061 GF17258-PA 377..811 28..416 215 22.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:56:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12407-PA 620 GG12407-PA 1..618 1..618 3287 97.9 Plus
Dere\GG14705-PA 1118 GG14705-PA 436..870 28..416 214 23.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11413-PA 623 GH11413-PA 1..623 1..619 3074 90 Plus
Dgri\GH18872-PA 1210 GH18872-PA 528..962 28..416 238 23.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10217-PB 619 CG10217-PB 1..619 1..619 3380 100 Plus
CG10217-PA 619 CG10217-PA 1..619 1..619 3380 100 Plus
CG16791-PD 1046 CG16791-PD 424..798 28..415 244 24.1 Plus
CG16791-PB 1049 CG16791-PB 424..801 28..415 241 24.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22397-PA 620 GI22397-PA 1..619 1..619 3063 89.8 Plus
Dmoj\GI10831-PA 1157 GI10831-PA 455..890 28..416 235 23.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24272-PA 576 GL24272-PA 1..575 1..619 2701 80.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26554-PA 624 GA26554-PA 1..623 1..619 3058 89.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23541-PA 619 GM23541-PA 1..619 1..619 3325 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18355-PA 620 GD18355-PA 1..620 1..619 3314 98.7 Plus
Dsim\GD19989-PA 564 GD19989-PA 17..317 116..416 204 24.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24647-PA 623 GJ24647-PA 1..623 1..619 3063 89.2 Plus
Dvir\GJ14437-PA 654 GJ14437-PA 24..399 28..416 262 25.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22766-PA 621 GK22766-PA 1..621 1..617 3084 90.2 Plus
Dwil\GK12767-PA 975 GK12767-PA 285..720 28..416 230 22.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:56:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23925-PA 620 GE23925-PA 1..619 1..619 3315 98.5 Plus
Dyak\GE24998-PA 1107 GE24998-PA 424..858 28..416 214 23.3 Plus

LD32918.hyp Sequence

Translation from 124 to 1983

> LD32918.hyp
MHYYLAAICLVGLMGSALGQYNLVQKDNCIIPKILQGSWFSWETGLPTLT
VIDATSMSSRGYCINYMRHKGDEYSFVFKERSKDCYHCVRTIIRTLNVFE
KFEGPCVGIPAGQEPTVDYVCRGVKDDQQLITLFNENFVPINCRSSLEGV
WHFTYQNRFRFTGVCDKPDARIQSCQTAGTQFLIQNQKFNVTYQQCEGME
GTFTGTVEFSCLGDWFVGKNHYFAVANTKESRKDEKYRCFLKNRDDDLYV
GVSITAECNTLKTPETSPERLKLTPVKAEFVEPGCTLPQNFSGEWVNTAN
IDADVSISETHINETYYPDKARYRKTIYVCRERRGNRVMMARLTVDGCQK
DYVCFDFMPRHHNIIRYRKGLAVIKDDFSTVCSWVQFPNSEAWKYDLFLA
RNPVPVRCPVAGKFNFTQRGEHPFRTRILGGVTLSPRPDIHCKQNISDLS
VCDTDQKELAVDENYCLSVDHLGRPVDIYSDPDYRMKCIGFWKENLKSYL
ITYDDLDPLSKYRCWVYQRADLNRVLMSQAVGAFCKLEQDVTSWNHSEGA
AVAIDAVEYERERDDCPMHFDDGLNPWKPSDASNIIFDWDFYRAGAATLK
FQLTGLVIVVLVQVRSLLA*

LD32918.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10217-PB 619 CG10217-PB 1..619 1..619 3380 100 Plus
CG10217-PA 619 CG10217-PA 1..619 1..619 3380 100 Plus
CG16791-PD 1046 CG16791-PD 424..798 28..415 244 24.1 Plus
CG16791-PB 1049 CG16791-PB 424..801 28..415 241 24.1 Plus