Clone LD32923 Report

Search the DGRC for LD32923

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:329
Well:23
Vector:pOT2
Associated Gene/TranscriptCG42240-RA
Protein status:LD32923.pep: gold
Preliminary Size:2059
Sequenced Size:1911

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15893 2001-01-01 Release 2 assignment
CG15893 2001-12-12 Blastp of sequenced clone
CG15893 2003-01-01 Sim4 clustering to Release 3
CG42240 2008-08-15 Release 5.9 accounting
CG42240 2008-12-18 5.12 accounting

Clone Sequence Records

LD32923.complete Sequence

1911 bp (1911 high quality bases) assembled on 2001-12-12

GenBank Submission: AY070559.1

> LD32923.complete
AGCCATCGAACGGCGAAGGTGCGCGCATTAAAACTCTCCCCCGCAAAAAC
CAAACAGAAAAAAGTGAAGAACGAAAACCGAAAAGAAAACGAAAAGACAG
GAAAATCCAAGCAAAACGAGCCGAAAGACCGTTTTATTTCTTTTTGTTTT
GTGTTCTGAAAGAGAGAGGGAAAAAGGCAAGCAGCAGAAAGTGATCGAGA
TGGCGTTCATGATGCCCGTGATGAAGAACAATTACGATATTTACAAGGAC
ACGCGTTCCCGCAAAACGTCAGAATGTTCGAATGCGAGTAGTAACGGTAC
AACGGCTTTGGCCACCGCTCTTGGAACGCCCGCCCAGGGACAACAACAAC
AGCGACGCCGCAAGGTGTCCGAATGCAAGTCGGAGAGCTTCGCCACCTCA
CCATCGCACGGTCAACTGGGCGTGTCCTCCCCCCACCAAAGGATGCAAAT
GCAGCGCTGCCACAGTTCGCGCGCTTTTCCACGCAACGCATCGCGCAGTT
CGCACGGTTCGCTGCAGCAAATGGTGTCGCCCACGCGCAGTAGTCCGCCC
AGCCGCTCGCACACCGCATCCGCACTGGAAAGGCAGGCGGCCGCCCAGGC
AGCCGCGATTAATCAAAAGCAACAACAGTCGGCCGCTGCAGCTGCTGCTG
TTGAATCTTCAAATGATTATACGAAGTTTCATTTGCGTTTGGTCGACAAG
CTGCGCAAGTCCTTTCGCAAGGATAGCGGTAAGCGGTCATGAGAGCAGCG
CAATCACAGCAACAACAACCAAATCTACGACAACAACAATGCCAGCAGCA
GCAGCACGGCGCTCCTTTCCATTTCCCACAACAATAACAACGACAACAAC
GGAGCCGGGTGGAAAGTTAGTGACGGTGCCGATGCCATTTCCAGAGGAAG
ATCGCCTGGAAGAGATGTGGAGGAGTGCAGTTCTGCAACGTTCGAGGCAC
TGGAAGCGTGTTCGAGAGCAGCCGAAGCGACAACACACAGAGAACGAGAG
AGAGGCATGGTCAGTCGTTTGGGGATACGCTTCCGGCGATACTGTAGATT
CCTGGCCCACTCCCCCCATGGAAGCGCTGCGGCGCCAGAAGACGAGACAG
AGGCGGAGGCTAGCTCCTTGGAGCAGCTGACCGGCAGCAGGAGCAGCAGT
CGCAGTCGCCGACGGCGCAGCAGCAGCATTGGGAGCGCCGGCAGCCGGCT
GAAGATGCGACTGCGGCGCTGCACTTCGTCGCCAGGATAAGAGCGAGATG
ACACTGATGATGGTCGGAGCGACAGAGAACGAGAGAGAGAGGACAGACTG
GAAGTGAAGTGCAGAAGAAGAGAAAGAGAGTGCAGTGGCGTAGCCAAAAG
GGAAAGGGGGTCGGGTCACAACAAAGAGTCACTTAACCTAGTTATTATTT
GCCCCCCGGGAAAAAGGAAAGTGAGTTGGCGTACAGAGTTGTTGGTGCAA
ATTAGATTGGGCATAATCTACATAATCTATACCTAAATCAATTTCGGTGT
ACATATGCAAACTACTAAATATCTACATATATATACAAGTTAAAGTCCCA
AATGTATAATTACATTAATTATATGTATTTATGTATGCCAGGCTTCCAAA
TAGAATAGAGAGCATAGAACCTATCCCAAAACCCAAACCAAAACCTCTCC
CAAATAATTCAAACTTTTTTTGTACCTGCGGTTTCGCGACAAGAGGAAAA
CAGAGAATTGCAACTGCCAATTGCATTGTATAACAAAGACCACATCAGCA
ACAACCCACAACAAGACAAAACACTTAAGAAAATAAACAGCAACCAGAAG
AAAAGAACCACGGATTTTTACCCTTCATTTTATAATTGCATAATTACGAA
GAGCAATTGACAATATACTTTTGAAAGCATTGCGAACAACAACAAAAAAA
AAAAAAAAAAA

LD32923.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG42240-RA 1893 CG42240-RA 1..1893 1..1893 9465 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6223036..6224928 1..1893 9420 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:26:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:27:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6330858..6332767 1..1910 9520 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:16:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6338956..6340865 1..1910 9520 99.8 Plus
Blast to na_te.dros performed 2019-03-15 22:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2411 750..852 188 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1518..1567 757..806 151 78 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2463..2627 757..914 149 58.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2359..2469 744..850 148 63.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6751..6816 742..806 147 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2327..2427 750..850 145 60.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6730..6842 742..850 139 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2399..2464 742..806 138 69.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2596..2644 758..806 137 75.5 Plus
roo 9092 roo DM_ROO 9092bp 1070..1146 731..806 130 64.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6772..6883 742..852 125 58 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6774 757..806 124 72 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2387..2480 756..852 117 62.2 Plus
X-element 4740 X-element ROXELEMENT 4740bp 1743..1795 607..660 114 70.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1542..1587 757..802 113 71.7 Plus
rover 7318 rover ROVER 7318bp 1257..1293 764..800 113 78.4 Plus

LD32923.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:28:28 Download gff for LD32923.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6223036..6223785 1..750 99 == Plus
chrX 6223842..6224156 807..1121 100 == Plus
chrX 6224231..6224928 1196..1893 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:14:32 Download gff for LD32923.complete
Subject Subject Range Query Range Percent Splice Strand
CG42240-RA 1..543 200..742 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:19:06 Download gff for LD32923.complete
Subject Subject Range Query Range Percent Splice Strand
CG42240-RA 1..543 200..742 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:20:24 Download gff for LD32923.complete
Subject Subject Range Query Range Percent Splice Strand
CG42240-RB 1..1041 200..1240 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:45:13 Download gff for LD32923.complete
Subject Subject Range Query Range Percent Splice Strand
CG42240-RA 1..543 200..742 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:23:09 Download gff for LD32923.complete
Subject Subject Range Query Range Percent Splice Strand
CG42240-RB 1..1041 200..1240 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:52:23 Download gff for LD32923.complete
Subject Subject Range Query Range Percent Splice Strand
CG42240-RA 1..1893 1..1893 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:19:06 Download gff for LD32923.complete
Subject Subject Range Query Range Percent Splice Strand
CG42240-RA 1..1893 1..1893 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:20:24 Download gff for LD32923.complete
Subject Subject Range Query Range Percent Splice Strand
CG42240-RB 17..1909 1..1893 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:45:14 Download gff for LD32923.complete
Subject Subject Range Query Range Percent Splice Strand
CG42240-RA 1..1893 1..1893 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:23:09 Download gff for LD32923.complete
Subject Subject Range Query Range Percent Splice Strand
CG42240-RB 17..1909 1..1893 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:28 Download gff for LD32923.complete
Subject Subject Range Query Range Percent Splice Strand
X 6330858..6332750 1..1893 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:28 Download gff for LD32923.complete
Subject Subject Range Query Range Percent Splice Strand
X 6330858..6332750 1..1893 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:28 Download gff for LD32923.complete
Subject Subject Range Query Range Percent Splice Strand
X 6330858..6332750 1..1893 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:20:24 Download gff for LD32923.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6224891..6226783 1..1893 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:21:36 Download gff for LD32923.complete
Subject Subject Range Query Range Percent Splice Strand
X 6338956..6340848 1..1893 100   Plus

LD32923.pep Sequence

Translation from 199 to 741

> LD32923.pep
MAFMMPVMKNNYDIYKDTRSRKTSECSNASSNGTTALATALGTPAQGQQQ
QRRRKVSECKSESFATSPSHGQLGVSSPHQRMQMQRCHSSRAFPRNASRS
SHGSLQQMVSPTRSSPPSRSHTASALERQAAAQAAAINQKQQQSAAAAAA
VESSNDYTKFHLRLVDKLRKSFRKDSGKRS*

LD32923.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20917-PA 315 GF20917-PA 1..194 1..177 624 73.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19586-PA 345 GG19586-PA 1..186 1..180 708 86.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24056-PA 190 GH24056-PA 1..190 1..180 528 75.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG42240-PC 180 CG42240-PC 1..180 1..180 907 100 Plus
CG42240-PA 180 CG42240-PA 1..180 1..180 907 100 Plus
CG42240-PB 346 CG42240-PB 1..180 1..180 907 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15185-PA 313 GI15185-PA 1..177 1..169 513 74 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19985-PA 165 GL19985-PA 6..165 33..180 393 65.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22636-PA 191 GA22636-PA 1..191 1..180 619 73.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12482-PA 335 GM12482-PA 1..176 1..179 701 95 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24755-PA 180 GD24755-PA 1..180 1..180 925 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17065-PA 345 GJ17065-PA 1..198 1..179 566 70.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19883-PA 196 GK19883-PA 1..196 1..180 532 67.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16745-PA 185 GE16745-PA 1..185 1..180 910 95.7 Plus

LD32923.hyp Sequence

Translation from 281 to 1129

> LD32923.hyp
MRVVTVQRLWPPLLERPPRDNNNSDAARCPNASRRASPPHHRTVNWACPP
PTKGCKCSAATVRALFHATHRAVRTVRCSKWCRPRAVVRPAARTPHPHWK
GRRPPRQPRLIKSNNSRPLQLLLLNLQMIIRSFICVWSTSCASPFARIAV
SGHESSAITATTTKSTTTTMPAAAARRSFPFPTTITTTTTEPGGKLVTVP
MPFPEEDRLEEMWRSAVLQRSRHWKRVREQPKRQHTENEREAWSVVWGYA
SGDTVDSWPTPPMEALRRQKTRQRRRLAPWSS*
Sequence LD32923.hyp has no blast hits.