Clone LD32943 Report

Search the DGRC for LD32943

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:329
Well:43
Vector:pOT2
Associated Gene/Transcriptnop5-RA
Protein status:LD32943.pep: gold
Preliminary Size:1985
Sequenced Size:1810

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10203 2001-01-01 Release 2 assignment
CG10206 2001-01-01 Release 2 assignment
CG10206 2001-10-10 Blastp of sequenced clone
CG10206 2003-01-01 Sim4 clustering to Release 3
nop5 2008-04-29 Release 5.5 accounting
nop5 2008-08-15 Release 5.9 accounting
nop5 2008-12-18 5.12 accounting

Clone Sequence Records

LD32943.complete Sequence

1810 bp (1810 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061401

> LD32943.complete
CTTTTACACGCGGCATACGGAAAAGAAGGTTAAGTTGCTGCTGGCTGCCG
AGAGTTTCGGTGGTTTTAAATTGAATTAAAATTGAAACTAAATGAGCAGA
GCGTAACGCGATGTTTGTGCTCTACGAAACGCCGGCGGGCTACGCGATTT
TCAAGCTGCTGGACGAAAAGAAACTGGAGCAGGTGGACAATCTGTACCAG
GAGTTTGAGACTCCGGAGAAGGCCAACAAGCTGCTGAAGCTGAAGCACTT
TGAGAAATTCAATGACACCACAGAGGCGCTGGCCGCTGCAACGGCGGCGG
TGGAGGGCAAGGTAGCCAAGCCGCTGAAAAAGACACTCAAGAAGCTGCTC
GTTGACGACGTGCAGTCTTCGCTCTTGGTTGCCGATGCCAAACTGGGCAC
AGCCATCAAGGACAAACTGTCGGTACAGTGTGTCTGCAACACTGGCGTCC
AGGAGCTGATGCGCTGTATTCGCCAGCAGGCGGACAGTCTGCTTGGTGGT
CTGCCCAAGCGTGAGATGACCGCCATGGCCCTGGGTCTTGCCCACTCCTT
GTCGCGCTACAAGCTTAAGTTCTCGCCCGACAAGATCGACACAATGATTG
TGCAGGCCCAGTGCTTGCTGGATGACCTGGACAAGGAGTTGAACAACTAC
ATGATGCGTGCACGCGAGTGGTACGGTTGGCACTTTCCCGAGCTGGGCAA
GATTATTACCGACAACATTGCCTTCGTGAAGACCATCAAGTTGGTGGGCA
CCAGGGATAATATGGCCACAAGCGATCTGTCCGACATTCTGCCAGAAGAT
GTGGAGGAAAAGGTCAAGGAGGCAGCTGAGATCTCTATGGGTACCGAAAT
CTCCGAGGAGGATGTGCTGAACATTCAGTGTCTGTGCGACGAGATCATAT
CGATCAACGATTACCGCACCCACTTGTACGACTACTTGAAGGCCAGAATG
ATGGCCATGGCTCCGAATTTGACAGTGCTCGTGGGCGACACCGTCGGCGC
TCGACTGATTGCCCATGCTGGCTCGCTGATTAACCTGGCCAAGCATCCCT
CATCTACTGTACAAATTCTGGGCGCCGAGAAAGCACTCTTCCGTGCGCTG
AAGACCAAGAAGGATACTCCAAAGTACGGTTTGATCTATCACGCCCAGTT
GGTGGGACAGGCAAGCCAGAAGAACAAGGGCAAAATGTCGCGTTCACTGG
CCGCCAAAGCGTCGCTTGCCACGCGTGTTGATGCCTTTGGCGAAGAGGCT
ACCTTTGAGCTAGGAGCGGCTCACAAGGTTAAACTGGAGTCTCGGCTGCG
ACTCCTGGAGGAGGGCAACCTGCGCAAACTCTCCGGCACCGGCAAGGCCA
AGGCCAAGTTCGAGAAGTACCAGGCCAAGAGCGAGGTGTTCACCTACCAA
CCAGAGGCCGACAACACCTTGAACGTGAAGAAGAAGCGCAAGCACTCCGA
GTCCGAACAGCAGACGCCTGTTAAGAAGGAGGAACCTGCTGAGGAGGAGG
CGGAGGTCAAGTCCGAGAAGAAGAAGAAAAAGAAGAAGAAGCAGAAGGAC
GAAGAGGTGGAGGCCGTTGAGGAGGCGGCAGCACCAGAGCCCGAGGATCA
GCCAACACCAGCAAAGAAAAAGAAAAAGTCAAAGCACCAGGAGTAATTTC
CCACCTTGACTAGTTAGTAGGCCTTAAGTTTTAGCATCATAGGTTACCTT
ACTGTAAAGTATAGGATTTTATAATTACCAAAACGATTAAAGTTTCCGGT
GTACATTAGAAATAAAATGTAATATTTGCATAACAAAATACAAAAAAAAA
AAAAAAAAAA

LD32943.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
nop5-RA 1962 nop5-RA 153..1946 1..1794 8970 100 Plus
Nop56-RA 1810 Nop56-RA 1041..1154 993..1106 210 78.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6916440..6917820 1381..1 6830 99.6 Minus
chr2L 23010047 chr2L 6915855..6916263 1791..1380 1950 98.8 Minus
chr3R 27901430 chr3R 18243242..18243355 1106..993 210 78.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:27:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6917341..6918721 1381..1 6905 100 Minus
2L 23513712 2L 6916750..6917164 1794..1380 2075 100 Minus
3R 32079331 3R 22419629..22419816 1180..993 220 74.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6917341..6918721 1381..1 6905 100 Minus
2L 23513712 2L 6916750..6917164 1794..1380 2075 100 Minus
3R 31820162 3R 22160534..22160647 1106..993 210 78.9 Minus
Blast to na_te.dros performed on 2019-03-16 02:42:52 has no hits.

LD32943.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:43:38 Download gff for LD32943.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6916440..6917820 1..1381 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:14:33 Download gff for LD32943.complete
Subject Subject Range Query Range Percent Splice Strand
nop5-RA 1..1536 111..1646 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:54:15 Download gff for LD32943.complete
Subject Subject Range Query Range Percent Splice Strand
nop5-RA 1..1536 111..1646 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:37:07 Download gff for LD32943.complete
Subject Subject Range Query Range Percent Splice Strand
nop5-RA 1..1536 111..1646 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:23:16 Download gff for LD32943.complete
Subject Subject Range Query Range Percent Splice Strand
nop5-RA 1..1536 111..1646 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:18:07 Download gff for LD32943.complete
Subject Subject Range Query Range Percent Splice Strand
nop5-RA 1..1536 111..1646 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:39:38 Download gff for LD32943.complete
Subject Subject Range Query Range Percent Splice Strand
nop5-RA 21..1811 1..1791 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:54:14 Download gff for LD32943.complete
Subject Subject Range Query Range Percent Splice Strand
nop5-RA 21..1811 1..1791 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:37:07 Download gff for LD32943.complete
Subject Subject Range Query Range Percent Splice Strand
nop5-RA 23..1813 1..1791 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:23:16 Download gff for LD32943.complete
Subject Subject Range Query Range Percent Splice Strand
nop5-RA 21..1811 1..1791 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:18:07 Download gff for LD32943.complete
Subject Subject Range Query Range Percent Splice Strand
nop5-RA 23..1813 1..1791 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:43:38 Download gff for LD32943.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6916753..6917162 1382..1791 100 <- Minus
2L 6917341..6918721 1..1381 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:43:38 Download gff for LD32943.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6916753..6917162 1382..1791 100 <- Minus
2L 6917341..6918721 1..1381 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:43:38 Download gff for LD32943.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6916753..6917162 1382..1791 100 <- Minus
2L 6917341..6918721 1..1381 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:37:07 Download gff for LD32943.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6916753..6917162 1382..1791 100 <- Minus
arm_2L 6917341..6918721 1..1381 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:00:23 Download gff for LD32943.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6916753..6917162 1382..1791 100 <- Minus
2L 6917341..6918721 1..1381 100   Minus

LD32943.pep Sequence

Translation from 110 to 1645

> LD32943.pep
MFVLYETPAGYAIFKLLDEKKLEQVDNLYQEFETPEKANKLLKLKHFEKF
NDTTEALAAATAAVEGKVAKPLKKTLKKLLVDDVQSSLLVADAKLGTAIK
DKLSVQCVCNTGVQELMRCIRQQADSLLGGLPKREMTAMALGLAHSLSRY
KLKFSPDKIDTMIVQAQCLLDDLDKELNNYMMRAREWYGWHFPELGKIIT
DNIAFVKTIKLVGTRDNMATSDLSDILPEDVEEKVKEAAEISMGTEISEE
DVLNIQCLCDEIISINDYRTHLYDYLKARMMAMAPNLTVLVGDTVGARLI
AHAGSLINLAKHPSSTVQILGAEKALFRALKTKKDTPKYGLIYHAQLVGQ
ASQKNKGKMSRSLAAKASLATRVDAFGEEATFELGAAHKVKLESRLRLLE
EGNLRKLSGTGKAKAKFEKYQAKSEVFTYQPEADNTLNVKKKRKHSESEQ
QTPVKKEEPAEEEAEVKSEKKKKKKKKQKDEEVEAVEEAAAPEPEDQPTP
AKKKKKSKHQE*

LD32943.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14470-PA 512 GF14470-PA 1..452 1..453 2223 97.8 Plus
Dana\GF16568-PA 495 GF16568-PA 4..414 1..404 863 42.8 Plus
Dana\GF23690-PA 501 GF23690-PA 100..341 162..401 312 30.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23571-PA 508 GG23571-PA 1..508 1..511 2616 98.6 Plus
Dere\GG12519-PA 497 GG12519-PA 4..414 1..404 860 42.8 Plus
Dere\GG15883-PA 501 GG15883-PA 100..341 162..401 319 31 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13163-PA 512 GH13163-PA 1..453 1..456 2204 96.1 Plus
Dgri\GH17505-PA 498 GH17505-PA 4..414 1..404 847 43.1 Plus
Dgri\GH14529-PA 503 GH14529-PA 104..345 162..401 290 31 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:04
Subject Length Description Subject Range Query Range Score Percent Strand
nop5-PA 511 CG10206-PA 1..511 1..511 2575 100 Plus
Nop56-PA 496 CG13849-PA 4..495 1..487 850 40.2 Plus
Prp31-PA 501 CG6876-PA 100..341 162..401 323 31 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17742-PA 520 GI17742-PA 1..452 1..455 2190 96 Plus
Dmoj\GI10373-PA 500 GI10373-PA 5..415 1..404 853 42.8 Plus
Dmoj\GI13100-PA 503 GI13100-PA 104..345 162..401 319 30.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25602-PA 517 GL25602-PA 1..455 1..454 2207 96.3 Plus
Dper\GL23339-PA 500 GL23339-PA 4..414 1..404 855 43.4 Plus
Dper\GL24782-PA 501 GL24782-PA 100..341 162..401 292 30.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28044-PA 517 GA28044-PA 1..455 1..454 2212 96.5 Plus
Dpse\Nop56-PA 503 GA12569-PA 4..502 1..487 819 40 Plus
Dpse\GA19924-PA 501 GA19924-PA 100..341 162..401 292 30.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13736-PA 509 GM13736-PA 1..509 1..511 2653 99.2 Plus
Dsec\GM23654-PA 496 GM23654-PA 4..495 1..487 833 39.2 Plus
Dsec\GM25514-PA 501 GM25514-PA 100..341 162..401 323 31.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22532-PA 510 GD22532-PA 1..510 1..511 2671 99.6 Plus
Dsim\GD18461-PA 496 GD18461-PA 4..495 1..487 832 39.2 Plus
Dsim\GD14529-PA 501 GD14529-PA 100..341 162..401 323 31.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17567-PA 518 GJ17567-PA 1..486 1..482 2250 92.2 Plus
Dvir\GJ22835-PA 498 GJ22835-PA 4..414 1..404 847 42.3 Plus
Dvir\GJ13847-PA 503 GJ13847-PA 104..345 162..401 318 30.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24250-PA 516 GK24250-PA 1..464 1..465 2223 95.7 Plus
Dwil\GK14188-PA 512 GK14188-PA 14..511 1..487 819 40 Plus
Dwil\GK20402-PA 504 GK20402-PA 103..344 162..401 338 32.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18393-PA 509 GE18393-PA 1..509 1..511 2601 98 Plus
Dyak\GE24041-PA 497 GE24041-PA 4..496 1..487 829 39.9 Plus
Dyak\GE22227-PA 501 GE22227-PA 100..341 162..401 319 31 Plus

LD32943.hyp Sequence

Translation from 110 to 1645

> LD32943.hyp
MFVLYETPAGYAIFKLLDEKKLEQVDNLYQEFETPEKANKLLKLKHFEKF
NDTTEALAAATAAVEGKVAKPLKKTLKKLLVDDVQSSLLVADAKLGTAIK
DKLSVQCVCNTGVQELMRCIRQQADSLLGGLPKREMTAMALGLAHSLSRY
KLKFSPDKIDTMIVQAQCLLDDLDKELNNYMMRAREWYGWHFPELGKIIT
DNIAFVKTIKLVGTRDNMATSDLSDILPEDVEEKVKEAAEISMGTEISEE
DVLNIQCLCDEIISINDYRTHLYDYLKARMMAMAPNLTVLVGDTVGARLI
AHAGSLINLAKHPSSTVQILGAEKALFRALKTKKDTPKYGLIYHAQLVGQ
ASQKNKGKMSRSLAAKASLATRVDAFGEEATFELGAAHKVKLESRLRLLE
EGNLRKLSGTGKAKAKFEKYQAKSEVFTYQPEADNTLNVKKKRKHSESEQ
QTPVKKEEPAEEEAEVKSEKKKKKKKKQKDEEVEAVEEAAAPEPEDQPTP
AKKKKKSKHQE*

LD32943.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
nop5-PA 511 CG10206-PA 1..511 1..511 2575 100 Plus
Nop56-PA 496 CG13849-PA 4..495 1..487 850 40.2 Plus
Prp31-PA 501 CG6876-PA 100..341 162..401 323 31 Plus