Clone LD32951 Report

Search the DGRC for LD32951

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:329
Well:51
Vector:pOT2
Associated Gene/TranscriptSin-RA
Protein status:LD32951.pep: gold
Preliminary Size:1739
Sequenced Size:1612

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Sin-RA 2010-11-11 Gleaning Pick By Joe Carlson

Clone Sequence Records

LD32951.complete Sequence

1612 bp assembled on 2011-03-25

GenBank Submission: BT126277.1

> LD32951.complete
GCAGACAAAACTATCAAATCGAAATTTAAATTATGGAAGACGAGGACGAT
CCCGTCGTGGAGGAGATTCCCGTATTCCTGTCGAAGAACCTGAGGGACAG
CCTGTATCTCTTTCAATACCCCACGAAAACGGAGCTCCCCAACCACGATG
ACTCCGTGATTGTCAATTGTTGTGTAAAACCAATCGCCCAGGAGGTGAAG
GTGGACTTCGGCCTGGACATTGAGTCGGCCCACTTCGATCGCTTCAAGGG
CGAGCAATTTGCGGTGGCCGCCGACGGAAAGAACACCTATGGAGCAGTTC
CACCAAAGGGTCAGGAGCGACCCACCTACAAACGTGGCATCATGGACAAA
CAGGCCTTCACAAGCTCGCGTTCCATAACCGATGTGGCCAAGTACATAGT
GGGCATCTTTACGGATCGGGAGGTGCATCTGTCGCCACTTACATCCATAG
TCCAAATGCGACCCGTTCTCAGTCACTTCGATAAGGACGACAAGCGCAAG
AAGGCGGAACTGAAGGCTCAAACGGAGGACACGGACGATGACGAGGTGCT
GCAGCAGGTCACGGTTAAATTTGCACGAGGAAATGCCAAAAACAGCGGAA
AGGAGCAACGTGTCGGCACCTACGACAGTTTCGTCCAGCGAATTGCGGAT
GAGCCGTGGTGCGAGGCCTACTGGCACTCGAGGGGCACGCCCACCGCCGA
ACTGGAGCGCCAGAAGCTCTTTGCCACCAGTCATCACGGCAGTTCCTCTT
TGGCTCTCGCTCCTGACGAATATCTTCGAAAGCTTCTGCCCTACGACGAG
CATGTGCAGACGGTAGCCCCAGCAGCTGCTTCTGCTGCCGCCCAAGTACT
TCCCGTCTACAACAAGGCCATGCTTAAGTCTATGCCGCTGCTGGAACAGC
TTACAGTGCTACTGAGAGATGCGCGGATGCTCTCGTTCAGCGACGTCATT
AGTATTCTCGCGGAGCACGTGGATCCGCATGTGGCTGCCGACAAGGTGCT
GGCTTTGCTGCCCCAGGTGGGCATCCTACTGCACGGCAACTGGGTGCCGA
AATCCGAGGTGGTCTTTCCCGAGAAGGTGCTTTCCCATGCGAACGGTGTG
TCCGCAGAGCAGATGATTCGCGCCAGAGATTATATACTCTTTCGTTTCTC
CCGCACGCCCTACCTGTTCCGAGCTCAGGTAATGGCCGCCACCCAGTTAC
CTCCTGCGGAAACACTTGACGTTTTGAAGACTGTGGCCCGGGTGAATAAC
ACAAAACGGTGGGAGCTGCTACTGCCACCCGACAAGGAGTTCGAGCAAAA
GTACCCGGAACTGGTCAGCCGACAGGAGTACCACTGGACCGCTTCCGAGC
AGCACTACAATGAAATGGACTGGGCTAGGGAAACCAAACGTGTTCGGAAA
CGTTCGACGAGGAAGAGCGAATCCCAGTCACTGACTTCAGCCATGCCGCC
GCCCGCAATGAATCACTCAACAACTGGCTCCGTGGATGCGTAGCATCGGA
TGATGATCTCCCAGCGGCGGAGAATCGGCAGCACGATTATACATCTAGGC
ACTATTAAAAAGACCAACAATTTTACTTTGTTAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

LD32951.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21020988..21022060 64..1136 5365 100 Plus
chr3L 24539361 chr3L 21022125..21022570 1137..1582 2230 100 Plus
chr3L 24539361 chr3L 21020866..21020930 1..65 325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21031979..21033051 64..1136 5365 100 Plus
3L 28110227 3L 21033116..21033564 1137..1585 2245 100 Plus
3L 28110227 3L 21031857..21031921 1..65 325 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21025079..21026151 64..1136 5365 100 Plus
3L 28103327 3L 21026216..21026664 1137..1585 2245 100 Plus
3L 28103327 3L 21024957..21025021 1..65 325 100 Plus
Blast to na_te.dros performed on 2019-03-16 23:00:05 has no hits.

LD32951.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:01:04 Download gff for LD32951.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21020866..21020930 1..65 100 -> Plus
chr3L 21020990..21022060 66..1136 100 -> Plus
chr3L 21022125..21022570 1137..1582 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-04-11 16:14:45 Download gff for LD32951.complete
Subject Subject Range Query Range Percent Splice Strand
Sin-RA 1..1461 33..1493 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:02:47 Download gff for LD32951.complete
Subject Subject Range Query Range Percent Splice Strand
Sin-RA 1..1461 33..1493 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:34:37 Download gff for LD32951.complete
Subject Subject Range Query Range Percent Splice Strand
Sin-RA 1..1461 33..1493 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-04-11 16:14:45 Download gff for LD32951.complete
Subject Subject Range Query Range Percent Splice Strand
Sin-RA 61..1642 1..1582 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:02:47 Download gff for LD32951.complete
Subject Subject Range Query Range Percent Splice Strand
Sin-RA 33..1614 1..1582 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:37 Download gff for LD32951.complete
Subject Subject Range Query Range Percent Splice Strand
Sin-RA 33..1614 1..1582 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:01:04 Download gff for LD32951.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21031857..21031921 1..65 100 -> Plus
3L 21031981..21033051 66..1136 100 -> Plus
3L 21033116..21033561 1137..1582 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:01:04 Download gff for LD32951.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21031857..21031921 1..65 100 -> Plus
3L 21031981..21033051 66..1136 100 -> Plus
3L 21033116..21033561 1137..1582 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:01:04 Download gff for LD32951.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21031857..21031921 1..65 100 -> Plus
3L 21031981..21033051 66..1136 100 -> Plus
3L 21033116..21033561 1137..1582 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:02:47 Download gff for LD32951.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21026216..21026661 1137..1582 100   Plus
arm_3L 21024957..21025021 1..65 100 -> Plus
arm_3L 21025081..21026151 66..1136 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:02:57 Download gff for LD32951.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21025081..21026151 66..1136 100 -> Plus
3L 21026216..21026661 1137..1582 100   Plus
3L 21024957..21025021 1..65 100 -> Plus

LD32951.pep Sequence

Translation from 32 to 1492

> LD32951.pep
MEDEDDPVVEEIPVFLSKNLRDSLYLFQYPTKTELPNHDDSVIVNCCVKP
IAQEVKVDFGLDIESAHFDRFKGEQFAVAADGKNTYGAVPPKGQERPTYK
RGIMDKQAFTSSRSITDVAKYIVGIFTDREVHLSPLTSIVQMRPVLSHFD
KDDKRKKAELKAQTEDTDDDEVLQQVTVKFARGNAKNSGKEQRVGTYDSF
VQRIADEPWCEAYWHSRGTPTAELERQKLFATSHHGSSSLALAPDEYLRK
LLPYDEHVQTVAPAAASAAAQVLPVYNKAMLKSMPLLEQLTVLLRDARML
SFSDVISILAEHVDPHVAADKVLALLPQVGILLHGNWVPKSEVVFPEKVL
SHANGVSAEQMIRARDYILFRFSRTPYLFRAQVMAATQLPPAETLDVLKT
VARVNNTKRWELLLPPDKEFEQKYPELVSRQEYHWTASEQHYNEMDWARE
TKRVRKRSTRKSESQSLTSAMPPPAMNHSTTGSVDA*

LD32951.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24293-PA 490 GF24293-PA 1..486 1..483 2134 82.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16156-PA 486 GG16156-PA 1..486 1..486 2563 97.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14565-PA 483 GH14565-PA 1..476 1..475 1913 74.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:19
Subject Length Description Subject Range Query Range Score Percent Strand
Sin-PA 486 CG10582-PA 1..486 1..486 2514 100 Plus
Sin-PC 485 CG10582-PC 10..485 11..486 2458 99.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13892-PA 480 GI13892-PA 1..478 1..480 1958 75.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24473-PA 115 GL24473-PA 1..114 1..114 495 75.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10413-PA 476 GA10413-PA 1..469 1..475 1992 76.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22337-PA 486 GM22337-PA 1..486 1..486 2578 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14927-PA 486 GD14927-PA 1..486 1..486 2584 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11746-PA 480 GJ11746-PA 1..478 1..480 2009 76.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25406-PA 482 GK25406-PA 3..475 1..477 1973 75.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19724-PA 487 GE19724-PA 1..487 1..486 2561 98.4 Plus

LD32951.hyp Sequence

Translation from 32 to 1492

> LD32951.hyp
MEDEDDPVVEEIPVFLSKNLRDSLYLFQYPTKTELPNHDDSVIVNCCVKP
IAQEVKVDFGLDIESAHFDRFKGEQFAVAADGKNTYGAVPPKGQERPTYK
RGIMDKQAFTSSRSITDVAKYIVGIFTDREVHLSPLTSIVQMRPVLSHFD
KDDKRKKAELKAQTEDTDDDEVLQQVTVKFARGNAKNSGKEQRVGTYDSF
VQRIADEPWCEAYWHSRGTPTAELERQKLFATSHHGSSSLALAPDEYLRK
LLPYDEHVQTVAPAAASAAAQVLPVYNKAMLKSMPLLEQLTVLLRDARML
SFSDVISILAEHVDPHVAADKVLALLPQVGILLHGNWVPKSEVVFPEKVL
SHANGVSAEQMIRARDYILFRFSRTPYLFRAQVMAATQLPPAETLDVLKT
VARVNNTKRWELLLPPDKEFEQKYPELVSRQEYHWTASEQHYNEMDWARE
TKRVRKRSTRKSESQSLTSAMPPPAMNHSTTGSVDA*

LD32951.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
Sin-PA 486 CG10582-PA 1..486 1..486 2514 100 Plus
Sin-PC 485 CG10582-PC 10..485 11..486 2458 99.8 Plus