BDGP Sequence Production Resources |
Search the DGRC for LD32963
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 329 |
Well: | 63 |
Vector: | pOT2 |
Associated Gene/Transcript | cbx-RA |
Protein status: | LD32963.pep: gold |
Sequenced Size: | 1055 |
Gene | Date | Evidence |
---|---|---|
CG10536 | 2002-11-13 | Blastp of sequenced clone |
cbx | 2008-04-29 | Release 5.5 accounting |
cbx | 2008-08-15 | Release 5.9 accounting |
cbx | 2008-12-18 | 5.12 accounting |
1055 bp (1055 high quality bases) assembled on 2002-11-13
GenBank Submission: BT001497
> LD32963.complete AAATTGGTTCAATTCTGGTGGTACAGTTAGCATAATATTCTTTTCTTTTT AAACCTACCCAGCATTATGTAATCGATTTAGGAGTATTTATAGTAAAACG AATATAAGGCTTGCAACTTAGCCGAAAAATGTGCGATCATATTTAAACCG CTTCCAAATCTGAAAAGAAGAAACGTGAACAATAAATATTTTTATGTACA TACATATGAACATATTTATATATGTATGTATGTGTATAATAATTCTGTAT ATATGACAAGTTGCTGATCACAACCATACAGCAGGAGTATAAAATTCTGG CCGAATACAAAATGATTGAGTCGGAGAAGTTGAGTGGGATATATGTGATA CCCAGCTATGCTAACTCCTTGCAGTGGTTTGGAGTCTTCTTTGGCCGACA GGGCTTGTATGCGGAAAGTGTTTTTCGATTCACAATTTTGCTCCCAGATC GTTTTCCCGACGACAAAAGTCTTCCGAGCATAATTTTCCAGCAGGATGTG ATTCATCCCCATGTGTGCCCGTACACCCACAGTTTGGACGTGAGCCACGC CTTCCCGGAGTGGCGCTGTGGAGAGGATCACCTTTGGCAGCTTTTAAAGT ACCTGCAAGTCATTTTCTCCGATCCCTTGGACAGTATTCGGGGCATTGAG GTAGATAAGCTCAAAAACAGCGAGGCTGCGGAGCTGCTGATGAATAACAA GGAGGAGTATGTTGCTCGCGTACAGGAAAATATCAAGGAGAGCAAGGAGC ATATATTTGACACCCCACCCACCGAAGATCCGCACTACATAGTATTCGAG AAGTTCCAGCAGGACGTGCACGGGCCCGTTCTGGAGCGCATCAAGGCCGG AAGAAGCAAGCTGACGGAGCCTTCAGCGCAACAAGCAAATGGTGGACATG CAACTGGTCTGTCATGGGTTAAGGAGGGCGAGTTTAAGCCACTTAGCATT GAGTAAAACCAATATACATATATTCTGTAAGTTATATTCTATCGTTGTCT CAATTTTAAAACGATTAAAGTTATTCAATTATTTACAAAAAAAAAAAAAA AAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 5751988..5752548 | 1036..476 | 2805 | 100 | Minus |
chr2R | 21145070 | chr2R | 5762304..5762555 | 252..1 | 1230 | 99.2 | Minus |
chr2R | 21145070 | chr2R | 5752602..5752705 | 476..373 | 520 | 100 | Minus |
chr2R | 21145070 | chr2R | 5752768..5752832 | 372..308 | 325 | 100 | Minus |
chr2R | 21145070 | chr2R | 5752902..5752956 | 307..253 | 275 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 9864508..9865070 | 1038..476 | 2815 | 100 | Minus |
2R | 25286936 | 2R | 9874821..9875072 | 252..1 | 1260 | 100 | Minus |
2R | 25286936 | 2R | 9865124..9865227 | 476..373 | 520 | 100 | Minus |
2R | 25286936 | 2R | 9865290..9865354 | 372..308 | 325 | 100 | Minus |
2R | 25286936 | 2R | 9865424..9865478 | 307..253 | 275 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 9865707..9866269 | 1038..476 | 2815 | 100 | Minus |
2R | 25260384 | 2R | 9876020..9876271 | 252..1 | 1260 | 100 | Minus |
2R | 25260384 | 2R | 9866323..9866426 | 476..373 | 520 | 100 | Minus |
2R | 25260384 | 2R | 9866489..9866553 | 372..308 | 325 | 100 | Minus |
2R | 25260384 | 2R | 9866623..9866677 | 307..253 | 275 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
FB | 1106 | FB DMTNFB 1106bp AKA(J01084) Derived from V00246 (g8708) (Rel. 36, Last updated, Version 3). | 252..383 | 86..219 | 115 | 59.1 | Plus |
HMS-Beagle2 | 7220 | HMS-Beagle2 Beagle2 7220bp | 6260..6310 | 982..1032 | 111 | 68.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 5762375..5762555 | 1..181 | 99 | Minus | |
chr2R | 5751988..5752547 | 477..1036 | 100 | <- | Minus |
chr2R | 5752602..5752705 | 373..476 | 100 | <- | Minus |
chr2R | 5752768..5752832 | 308..372 | 100 | <- | Minus |
chr2R | 5752902..5752956 | 253..307 | 100 | == | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cbx-RB | 32..735 | 253..956 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cbx-RB | 32..735 | 253..956 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cbx-RB | 32..735 | 253..956 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cbx-RB | 32..735 | 253..956 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cbx-RB | 32..735 | 253..956 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cbx-RA | 1..1036 | 1..1036 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cbx-RA | 1..1036 | 1..1036 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cbx-RA | 1..1036 | 1..1036 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cbx-RA | 1..1036 | 1..1036 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cbx-RA | 1..1036 | 1..1036 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9864510..9865069 | 477..1036 | 100 | <- | Minus |
2R | 9865124..9865227 | 373..476 | 100 | <- | Minus |
2R | 9865290..9865354 | 308..372 | 100 | <- | Minus |
2R | 9865424..9865478 | 253..307 | 100 | <- | Minus |
2R | 9874821..9875072 | 1..252 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9864510..9865069 | 477..1036 | 100 | <- | Minus |
2R | 9865124..9865227 | 373..476 | 100 | <- | Minus |
2R | 9865290..9865354 | 308..372 | 100 | <- | Minus |
2R | 9865424..9865478 | 253..307 | 100 | <- | Minus |
2R | 9874821..9875072 | 1..252 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9864510..9865069 | 477..1036 | 100 | <- | Minus |
2R | 9865124..9865227 | 373..476 | 100 | <- | Minus |
2R | 9865290..9865354 | 308..372 | 100 | <- | Minus |
2R | 9865424..9865478 | 253..307 | 100 | <- | Minus |
2R | 9874821..9875072 | 1..252 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 5752015..5752574 | 477..1036 | 100 | <- | Minus |
arm_2R | 5752629..5752732 | 373..476 | 100 | <- | Minus |
arm_2R | 5752795..5752859 | 308..372 | 100 | <- | Minus |
arm_2R | 5752929..5752983 | 253..307 | 100 | <- | Minus |
arm_2R | 5762326..5762577 | 1..252 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9865709..9866268 | 477..1036 | 100 | <- | Minus |
2R | 9866323..9866426 | 373..476 | 100 | <- | Minus |
2R | 9866489..9866553 | 308..372 | 100 | <- | Minus |
2R | 9866623..9866677 | 253..307 | 100 | <- | Minus |
2R | 9876020..9876271 | 1..252 | 100 | Minus |
Translation from 311 to 955
> LD32963.pep MIESEKLSGIYVIPSYANSLQWFGVFFGRQGLYAESVFRFTILLPDRFPD DKSLPSIIFQQDVIHPHVCPYTHSLDVSHAFPEWRCGEDHLWQLLKYLQV IFSDPLDSIRGIEVDKLKNSEAAELLMNNKEEYVARVQENIKESKEHIFD TPPTEDPHYIVFEKFQQDVHGPVLERIKAGRSKLTEPSAQQANGGHATGL SWVKEGEFKPLSIE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13050-PA | 242 | GF13050-PA | 31..242 | 1..214 | 1017 | 86 | Plus |
Dana\GF13159-PA | 266 | GF13159-PA | 29..211 | 5..179 | 451 | 43.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25253-PA | 244 | GG25253-PA | 31..244 | 1..214 | 1106 | 95.3 | Plus |
Dere\GG20882-PA | 266 | GG20882-PA | 29..211 | 5..179 | 465 | 44.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20212-PA | 246 | GH20212-PA | 31..246 | 1..214 | 746 | 67.3 | Plus |
Dgri\GH22748-PA | 211 | GH22748-PA | 28..206 | 1..175 | 490 | 50.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG46338-PA | 214 | CG46338-PA | 1..214 | 1..214 | 1139 | 100 | Plus |
CG46338-PB | 244 | CG46338-PB | 31..244 | 1..214 | 1139 | 100 | Plus |
CG46338-PC | 183 | CG46338-PC | 1..183 | 1..214 | 937 | 85.5 | Plus |
CG16894-PA | 266 | CG16894-PA | 29..211 | 5..179 | 457 | 45.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20739-PA | 245 | GI20739-PA | 31..245 | 1..214 | 845 | 71 | Plus |
Dmoj\GI18531-PA | 256 | GI18531-PA | 28..213 | 1..180 | 511 | 47.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10235-PA | 244 | GL10235-PA | 31..244 | 1..214 | 982 | 81.8 | Plus |
Dper\GL11711-PA | 262 | GL11711-PA | 26..228 | 1..190 | 447 | 43.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10380-PA | 244 | GA10380-PA | 31..244 | 1..214 | 982 | 81.8 | Plus |
Dpse\GA10380-PB | 214 | GA10380-PB | 1..214 | 1..214 | 976 | 81.8 | Plus |
Dpse\GA14202-PA | 262 | GA14202-PA | 26..228 | 1..190 | 440 | 42.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20572-PA | 244 | GM20572-PA | 31..244 | 1..214 | 1118 | 97.2 | Plus |
Dsec\GM19805-PA | 266 | GM19805-PA | 29..211 | 5..179 | 455 | 45.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10043-PA | 244 | GD10043-PA | 31..244 | 1..214 | 1128 | 98.1 | Plus |
Dsim\GD25298-PA | 188 | GD25298-PA | 29..151 | 5..126 | 291 | 46.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20476-PA | 245 | GJ20476-PA | 31..245 | 1..214 | 831 | 70 | Plus |
Dvir\GJ21397-PA | 256 | GJ21397-PA | 28..212 | 1..179 | 517 | 48.6 | Plus |
Translation from 311 to 955
> LD32963.hyp MIESEKLSGIYVIPSYANSLQWFGVFFGRQGLYAESVFRFTILLPDRFPD DKSLPSIIFQQDVIHPHVCPYTHSLDVSHAFPEWRCGEDHLWQLLKYLQV IFSDPLDSIRGIEVDKLKNSEAAELLMNNKEEYVARVQENIKESKEHIFD TPPTEDPHYIVFEKFQQDVHGPVLERIKAGRSKLTEPSAQQANGGHATGL SWVKEGEFKPLSIE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cbx-PA | 214 | CG10536-PA | 1..214 | 1..214 | 1139 | 100 | Plus |
cbx-PB | 244 | CG10536-PB | 31..244 | 1..214 | 1139 | 100 | Plus |
cbx-PC | 183 | CG10536-PC | 1..183 | 1..214 | 937 | 85.5 | Plus |
CG16894-PA | 266 | CG16894-PA | 29..211 | 5..179 | 457 | 45.4 | Plus |