Clone LD32974 Report

Search the DGRC for LD32974

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:329
Well:74
Vector:pOT2
Associated Gene/TranscriptCG12253-RA
Protein status:LD32974.pep: gold
Preliminary Size:1390
Sequenced Size:1246

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12253 2001-01-01 Release 2 assignment
CG12253 2002-05-31 Blastp of sequenced clone
CG12253 2003-01-01 Sim4 clustering to Release 3
CG12253 2008-04-29 Release 5.5 accounting
CG12253 2008-08-15 Release 5.9 accounting
CG12253 2008-12-18 5.12 accounting

Clone Sequence Records

LD32974.complete Sequence

1246 bp (1246 high quality bases) assembled on 2002-05-31

GenBank Submission: AY118549

> LD32974.complete
AAGTAAACAAGTGAAAATGGAAGATATACAAAGATTTCAAAGGTCTCTAA
AAGACTTTGATTATTTCAAAGACTTTCAATGTTTTCTGAATATCAAACAC
AATTCTCGAGCGCGGGCAACGCATATAAAGAAAAGGAACCCAAGATTTAA
TCCATTGACCGATCTAAATGAGCATAAATTTCGACTAAAGTACCGATACA
CTAAGGAAAACCTTCGCAGAATTATTGAAATTGTACGGGATGACTTGGAA
ATTGAATATTTTGAGCCGTTAAAGAGGGAGCAAGTTCCAATAGATTTGCA
GATTCTATCCGCTATTCGCTTGTGGGGCGGCACAGAGCACCCCAAATTAA
CTGCAATGGCCCATGGCGTTAGTTTACGCACTTTGGCAAAAATAACTAGG
CGCGTGGCATCTGTCCTATCATCGAAAGCTTCCAGGTATATCCGAATGCC
GGCTACTCTATCGGAAAAGGAGCGATCTGGTTCGGCGTTTCAAGCAATTG
CCAATATGCCGCAAGTCATTGGTGCTTTACTACAGACAACTGTGAGGTTT
CAACCGGAAAACTGTGCCCCTGATCTGGATGGAGAGGAGCTTTTGCCCGC
CCTTACCAGCCGGGAGGAGGAACTTCACATTCAGATTGTTTGCGATGCGG
CTCATAAGATAAGGGACCTTGATATCCGACTGATCGATGAGCAGTCCATG
CTCACCGACACCGAGATGTTCGGTCTGTCCAAAATAAAGGATCGATTCGA
ACAGAACGAGTTCCGGGGTCGTATTTTGCTGGGCAACGAAATGGTGCGCT
GCTCCTCCTCCCTGTTCACACCGGTTCGATTCCCGAGGAACCAATCCGAG
GAGCTGTATAACCACGCCCACGCGGTCACCTACGCATCGGCTAGAAAGTG
TCTCAATCTGCTGATGAGTCGCTTCGGTATCCTTGCCACCGAAATCCAGG
GTTCCCATGGATCTGCAAAGCAAACGATTACGGCGTTGGCCATACTCCAC
AACATGGCCATGGAGTGGGTCGATCCAAGCATTGATACGGAACAGAACAT
TTCACCCTTTAATTCCACTTTCTTCAATTCCATAGGAAGGTCACCAAAAT
CCGGAGATGACAACAATCGAAGACAATTCATTAAAACCCATTTTGCTTGC
TAATAAATAAGAGTTCTTGCAAACAGAACCCATTACGAATACAATTTGTA
ACTTTCAGTATTAAAATTATTAAAAACAAAAAAAAAAAAAAAAAAA

LD32974.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG12253-RA 1273 CG12253-RA 32..1261 1..1230 6150 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:27:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10987040..10987738 336..1034 3495 100 Plus
chr2L 23010047 chr2L 10986575..10986911 1..337 1685 100 Plus
chr2L 23010047 chr2L 10987804..10987997 1034..1227 970 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:27:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10988284..10988982 336..1034 3495 100 Plus
2L 23513712 2L 10987819..10988155 1..337 1685 100 Plus
2L 23513712 2L 10989048..10989244 1034..1230 985 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10988284..10988982 336..1034 3495 100 Plus
2L 23513712 2L 10987819..10988155 1..337 1685 100 Plus
2L 23513712 2L 10989048..10989244 1034..1230 985 100 Plus
Blast to na_te.dros performed 2019-03-15 22:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\spock 4952 Dmir\spock SPOCK 4952bp Derived from AY144571. 2003..2123 197..315 113 58.2 Plus

LD32974.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:28:31 Download gff for LD32974.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10986575..10986911 1..337 100 -> Plus
chr2L 10987042..10987738 338..1034 100 -> Plus
chr2L 10987805..10987997 1035..1227 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:14:35 Download gff for LD32974.complete
Subject Subject Range Query Range Percent Splice Strand
CG12253-RA 1..1137 17..1153 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:34:15 Download gff for LD32974.complete
Subject Subject Range Query Range Percent Splice Strand
CG12253-RA 1..1137 17..1153 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:20:29 Download gff for LD32974.complete
Subject Subject Range Query Range Percent Splice Strand
CG12253-RA 1..1137 17..1153 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:25:51 Download gff for LD32974.complete
Subject Subject Range Query Range Percent Splice Strand
CG12253-RA 1..1137 17..1153 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:23:17 Download gff for LD32974.complete
Subject Subject Range Query Range Percent Splice Strand
CG12253-RA 1..1137 17..1153 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:05:23 Download gff for LD32974.complete
Subject Subject Range Query Range Percent Splice Strand
CG12253-RA 3..1229 1..1227 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:34:14 Download gff for LD32974.complete
Subject Subject Range Query Range Percent Splice Strand
CG12253-RA 3..1229 1..1227 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:20:29 Download gff for LD32974.complete
Subject Subject Range Query Range Percent Splice Strand
CG12253-RA 14..1240 1..1227 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:25:51 Download gff for LD32974.complete
Subject Subject Range Query Range Percent Splice Strand
CG12253-RA 3..1229 1..1227 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:23:17 Download gff for LD32974.complete
Subject Subject Range Query Range Percent Splice Strand
CG12253-RA 14..1240 1..1227 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:31 Download gff for LD32974.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10987819..10988155 1..337 100 -> Plus
2L 10988286..10988982 338..1034 100 -> Plus
2L 10989049..10989241 1035..1227 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:31 Download gff for LD32974.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10987819..10988155 1..337 100 -> Plus
2L 10988286..10988982 338..1034 100 -> Plus
2L 10989049..10989241 1035..1227 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:31 Download gff for LD32974.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10987819..10988155 1..337 100 -> Plus
2L 10988286..10988982 338..1034 100 -> Plus
2L 10989049..10989241 1035..1227 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:20:29 Download gff for LD32974.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10987819..10988155 1..337 100 -> Plus
arm_2L 10988286..10988982 338..1034 100 -> Plus
arm_2L 10989049..10989241 1035..1227 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:58:15 Download gff for LD32974.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10987819..10988155 1..337 100 -> Plus
2L 10988286..10988982 338..1034 100 -> Plus
2L 10989049..10989241 1035..1227 100   Plus

LD32974.hyp Sequence

Translation from 0 to 1152

> LD32974.hyp
SKQVKMEDIQRFQRSLKDFDYFKDFQCFLNIKHNSRARATHIKKRNPRFN
PLTDLNEHKFRLKYRYTKENLRRIIEIVRDDLEIEYFEPLKREQVPIDLQ
ILSAIRLWGGTEHPKLTAMAHGVSLRTLAKITRRVASVLSSKASRYIRMP
ATLSEKERSGSAFQAIANMPQVIGALLQTTVRFQPENCAPDLDGEELLPA
LTSREEELHIQIVCDAAHKIRDLDIRLIDEQSMLTDTEMFGLSKIKDRFE
QNEFRGRILLGNEMVRCSSSLFTPVRFPRNQSEELYNHAHAVTYASARKC
LNLLMSRFGILATEIQGSHGSAKQTITALAILHNMAMEWVDPSIDTEQNI
SPFNSTFFNSIGRSPKSGDDNNRRQFIKTHFAC*

LD32974.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG12253-PA 378 CG12253-PA 1..378 6..383 1947 100 Plus

LD32974.pep Sequence

Translation from 16 to 1152

> LD32974.pep
MEDIQRFQRSLKDFDYFKDFQCFLNIKHNSRARATHIKKRNPRFNPLTDL
NEHKFRLKYRYTKENLRRIIEIVRDDLEIEYFEPLKREQVPIDLQILSAI
RLWGGTEHPKLTAMAHGVSLRTLAKITRRVASVLSSKASRYIRMPATLSE
KERSGSAFQAIANMPQVIGALLQTTVRFQPENCAPDLDGEELLPALTSRE
EELHIQIVCDAAHKIRDLDIRLIDEQSMLTDTEMFGLSKIKDRFEQNEFR
GRILLGNEMVRCSSSLFTPVRFPRNQSEELYNHAHAVTYASARKCLNLLM
SRFGILATEIQGSHGSAKQTITALAILHNMAMEWVDPSIDTEQNISPFNS
TFFNSIGRSPKSGDDNNRRQFIKTHFAC*

LD32974.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15839-PA 375 GF15839-PA 1..372 1..376 1471 75 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23689-PA 374 GG23689-PA 1..373 1..377 1864 92.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10971-PA 386 GH10971-PA 1..385 1..378 1160 59.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12253-PA 378 CG12253-PA 1..378 1..378 1947 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18154-PA 380 GI18154-PA 1..378 1..377 1215 62.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19013-PA 204 GL19013-PA 1..117 1..116 356 60.7 Plus
Dper\GL19013-PA 204 GL19013-PA 89..185 258..353 285 56.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11511-PA 374 GA11511-PA 1..373 1..378 1334 68.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18779-PA 378 GM18779-PA 1..378 1..378 1976 96.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23747-PA 378 GD23747-PA 1..378 1..378 1963 96.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14579-PA 385 GJ14579-PA 1..383 1..377 1177 59.8 Plus
Dvir\GJ10264-PA 364 GJ10264-PA 47..339 54..357 157 23.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15247-PA 379 GK15247-PA 1..371 1..378 1190 61.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18501-PA 378 GE18501-PA 1..378 1..378 1901 93.7 Plus